FvH4_6g05330

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0002437
Physical Location & Seq
Reverse (-)
2998913 .. 3001718
2806 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g05330.t1

Sequence Viewer

Length: 1110 bp
ATGGCTACCAACACCTTCATTCTCCAAATCTTGTTTTCCATCTTCCTTTTACCTCTTGCCAATTCCATTCACTTTAACTACCCAACTGTCTTCAACTTCGGTGACTCGAATTCCGACACCGGAAACCTTGTCTCCGCCGGCATTGAGACCCTTGCCCCTCCTAATGGACAGAACTACTTCAAAACCCCATCTGGCAGATACTTGGATGCAATGAACCTGCCATTTCTAAATGCCTATCTGGATTCAGTTGGAATGCCAAATTTTCGAAAAGGGTGCAACTTTGCTGCTGCAGGGTCTACTATACTTCCTGCAACTCCAACATCTGTGAGCCCATTTTCGTTTGCGGTTCAAGTCTCTCAGTTTCTTAGGTTCAAAGCCAGGGTTCTTGAAATTCTAGCTAAAGGTAAGAAATATGAGAAGTATCTGCCCGCAGAAGATTTTTTTGGGAAGGGCCTTTATATGTTTGACATTGGTCAAAATGACATTGCTGGTGGATTTTACTCTAAGACATTGGATCAGATTCTTGCTTCAATTCCAACAATTCTGGTAGAATTCGAAACGGGAATAAAGAGACTATATGATCAAGGAGCTAGGAACTTTTGGATACACAACACAGGTCCAGTGGGGTGTTTGACTCAAAATGTTGCTAGATTCGGAACAGACCCTTCAAAGCTTGATGATCAAGGTTGTGTTAGTGGACACAACCAAGCTGCGAAAGCTTTCAACCTGCAGCTTCATGCTCTCACCAAAAAGTTGCAAGGCCAATATACTGATGCAAATGTCACATATGTGGATATCTTCTCCATCAAATCTAACCTCATTGCAAACTATTCCAAAAACGGATTTGAACAACCTATTATGGCTTGCTGTGGGTATGGAGGACCACCCTTGAACTATGACTTTCAGATTAGCTGTGGGCAAACAAAGGTCTTGAATGGGAGCTCTGTCACAGCCAAAGGGTGCAGTGACAGTAGTGCCTATGTTAGTTGGGATGGGATTCATTACACTGAGGCTGCAAATCAGTTTGTCTCATCAAAGATACTTACCGGAGTATACTCTGATCCACCTTTTTCAGACCAAATGCCTTTCCTTCTGAACCTCAAGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00901 ko01110 map00901 map01110
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

370

Amino Acids

40.39

Weight (kDa)

6.93

Isoelectric Point (pI)

34.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 30 - 346 3.1e-41 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 225, 735
AccI GTMKAC 2 cut(s) 296, 1053
AciI CCGC 3 cut(s) 135, 344, 429
AclWI GGATC 2 cut(s) 522, 1055
AcsI RAATTY 4 cut(s) 109, 259, 390, 551
AfiI CCNNNNNNNGG 1 cut(s) 164
AjnI CCWGG 1 cut(s) 377
AjuI GAANNNNNNNTTGG 2 cut(s) 426, 458
AleI CACNNNNGTG 1 cut(s) 788
AluBI AGCT 8 cut(s) 398, 590, 673, 710, 719, 733, 912, 942
AluI AGCT 8 cut(s) 398, 590, 673, 710, 719, 733, 912, 942
Alw21I GWGCWC 1 cut(s) 944
Alw26I GTCTC 5 cut(s) 136, 140, 358, 565, 1033
AlwI GGATC 2 cut(s) 522, 1055
AoxI GGCC 2 cut(s) 451, 760
ApeKI GCWGC 5 cut(s) 284, 287, 710, 730, 1013
ApoI RAATTY 4 cut(s) 109, 259, 390, 551
Asp700I GAANNNNTTC 2 cut(s) 176, 719
AspS9I GGNCC 3 cut(s) 451, 617, 881
AsuHPI GGTGA 2 cut(s) 113, 736
AsuII TTCGAA 2 cut(s) 265, 555
AvaII GGWCC 2 cut(s) 617, 881
BanII GRGCYC 2 cut(s) 332, 944
BbsI GAAGAC 1 cut(s) 82
Bbv12I GWGCWC 1 cut(s) 944
BbvI GCAGC 5 cut(s) 271, 274, 697, 742, 1000
BccI CCATC 4 cut(s) 47, 196, 812, 986
BcgI CGANNNNNNTGC 2 cut(s) 255, 289
BciT130I CCWGG 1 cut(s) 379
BciVI GTATCC 1 cut(s) 597
BclI TGATCA 2 cut(s) 580, 679
BcoDI GTCTC 5 cut(s) 136, 140, 358, 565, 1033
BfaI CTAG 3 cut(s) 395, 591, 648
BfmI CTRYAG 2 cut(s) 288, 728
BfuAI ACCTGC 2 cut(s) 225, 735
BfuI GTATCC 1 cut(s) 597
BisI GCNGC 5 cut(s) 285, 288, 711, 731, 1014
BlsI GCNGC 5 cut(s) 286, 289, 712, 732, 1015
Bme1390I CCNGG 1 cut(s) 379
Bme18I GGWCC 2 cut(s) 617, 881
BmgT120I GGNCC 3 cut(s) 451, 617, 881
BmrFI CCNGG 1 cut(s) 379
BmsI GCATC 2 cut(s) 196, 763
BoxI GACNNNNGTC 1 cut(s) 471
BpiI GAAGAC 1 cut(s) 82
Bpu14I TTCGAA 2 cut(s) 265, 555
BpuEI CTTGAG 1 cut(s) 1085
BsaI GGTCTC 1 cut(s) 140
BsaJI CCNNGG 1 cut(s) 378
BsaWI WCCGGW 2 cut(s) 119, 1046
BsaXI ACNNNNNCTCC 2 cut(s) 116, 146
Bsc4I CCNNNNNNNGG 1 cut(s) 164
Bse118I RCCGGY 1 cut(s) 137
Bse1I ACTGG 1 cut(s) 620
Bse3DI GCAATG 3 cut(s) 216, 483, 819
BseBI CCWGG 1 cut(s) 379
BseDI CCNNGG 1 cut(s) 378
BseGI GGATG 2 cut(s) 211, 997
BseLI CCNNNNNNNGG 1 cut(s) 164
BseMI GCAATG 3 cut(s) 216, 483, 819
BseMII CTCAG 2 cut(s) 371, 999
BseNI ACTGG 1 cut(s) 620
BseXI GCAGC 5 cut(s) 271, 274, 697, 742, 1000
BsgI GTGCAG 1 cut(s) 982
BshFI GGCC 2 cut(s) 453, 762
BsiHKAI GWGCWC 1 cut(s) 944
BsiSI CCGG 3 cut(s) 120, 138, 1047
BslI CCNNNNNNNGG 1 cut(s) 164
BsmAI GTCTC 5 cut(s) 136, 140, 358, 565, 1033
BsmI GAATGC 1 cut(s) 258
BsnI GGCC 2 cut(s) 453, 762
Bso31I GGTCTC 1 cut(s) 140
Bsp119I TTCGAA 2 cut(s) 265, 555
Bsp1286I GDGCHC 2 cut(s) 332, 944
Bsp143I GATC 4 cut(s) 514, 580, 679, 1060
BspACI CCGC 3 cut(s) 135, 344, 429
BspANI GGCC 2 cut(s) 453, 762
BspCNI CTCAG 2 cut(s) 370, 1000
BspMAI CTGCAG 2 cut(s) 292, 732
BspMI ACCTGC 2 cut(s) 225, 735
BspPI GGATC 2 cut(s) 522, 1055
BspT104I TTCGAA 2 cut(s) 265, 555
BspTNI GGTCTC 1 cut(s) 140
BsrDI GCAATG 3 cut(s) 216, 483, 819
BsrFI RCCGGY 1 cut(s) 137
BsrI ACTGG 1 cut(s) 620
BssAI RCCGGY 1 cut(s) 137
BssECI CCNNGG 1 cut(s) 378
BssMI GATC 4 cut(s) 514, 580, 679, 1060
BssNAI GTATAC 1 cut(s) 1054
Bst1107I GTATAC 1 cut(s) 1054
Bst2UI CCWGG 1 cut(s) 379
Bst4CI ACNGT 2 cut(s) 88, 971
BstBI TTCGAA 2 cut(s) 265, 555
BstC8I GCNNGC 3 cut(s) 139, 429, 865
BstDEI CTNAG 4 cut(s) 357, 365, 504, 1008
BstF5I GGATG 2 cut(s) 211, 997
BstKTI GATC 4 cut(s) 517, 583, 682, 1063
BstMAI GTCTC 5 cut(s) 136, 140, 358, 565, 1033
BstMBI GATC 4 cut(s) 514, 580, 679, 1060
BstMWI GCNNNNNNNGC 1 cut(s) 716
BstNI CCWGG 1 cut(s) 379
BstPAI GACNNNNGTC 1 cut(s) 471
BstSCI CCNGG 1 cut(s) 377
BstSFI CTRYAG 2 cut(s) 288, 728
BstV1I GCAGC 5 cut(s) 271, 274, 697, 742, 1000
BstV2I GAAGAC 1 cut(s) 82
BstZ17I GTATAC 1 cut(s) 1054
BsuI GTATCC 1 cut(s) 597
BsuRI GGCC 2 cut(s) 453, 762
BtsCI GGATG 2 cut(s) 211, 997
BtsI GCAGTG 1 cut(s) 970
BtsIMutI CAGTG 3 cut(s) 627, 970, 1005
BveI ACCTGC 2 cut(s) 225, 735
Cac8I GCNNGC 3 cut(s) 139, 429, 865
Cfr10I RCCGGY 1 cut(s) 137
Cfr13I GGNCC 3 cut(s) 451, 617, 881
CviAII CATG 1 cut(s) 737
DdeI CTNAG 4 cut(s) 357, 365, 504, 1008
DpnI GATC 4 cut(s) 516, 582, 681, 1062
DpnII GATC 4 cut(s) 514, 580, 679, 1060
EciI GGCGGA 1 cut(s) 124
Ecl136II GAGCTC 1 cut(s) 942
Eco24I GRGCYC 2 cut(s) 332, 944
Eco31I GGTCTC 1 cut(s) 140
Eco32I GATATC 1 cut(s) 796
Eco47I GGWCC 2 cut(s) 617, 881
Eco53kI GAGCTC 1 cut(s) 942
EcoICRI GAGCTC 1 cut(s) 942
EcoO109I RGGNCCY 1 cut(s) 451
EcoRI GAATTC 2 cut(s) 109, 551
EcoRII CCWGG 1 cut(s) 377
EcoRV GATATC 1 cut(s) 796
EcoT38I GRGCYC 2 cut(s) 332, 944
FaeI CATG 1 cut(s) 740
FatI CATG 1 cut(s) 736
FauI CCCGC 1 cut(s) 436
FauNDI CATATG 1 cut(s) 787
FbaI TGATCA 2 cut(s) 580, 679
FblI GTMKAC 2 cut(s) 296, 1053
Fnu4HI GCNGC 5 cut(s) 285, 288, 711, 731, 1014
FokI GGATG 2 cut(s) 218, 1004
FriOI GRGCYC 2 cut(s) 332, 944
Fsp4HI GCNGC 5 cut(s) 285, 288, 711, 731, 1014
FspBI CTAG 3 cut(s) 395, 591, 648
GluI GCNGC 5 cut(s) 285, 288, 711, 731, 1014
HaeIII GGCC 2 cut(s) 453, 762
HapII CCGG 3 cut(s) 120, 138, 1047
Hin1II CATG 1 cut(s) 740
HindIII AAGCTT 2 cut(s) 671, 717
HinfI GANTC 6 cut(s) 104, 242, 520, 634, 651, 997
HpaII CCGG 3 cut(s) 120, 138, 1047
HphI GGTGA 2 cut(s) 113, 736
Hpy166II GTNNAC 3 cut(s) 297, 698, 1054
Hpy188I TCNGA 8 cut(s) 115, 519, 656, 906, 1060, 1075, 1095, 1109
Hpy188III TCNNGA 3 cut(s) 239, 386, 931
Hpy8I GTNNAC 3 cut(s) 297, 698, 1054
HpyAV CCTTC 4 cut(s) 25, 442, 675, 1100
HpyCH4III ACNGT 2 cut(s) 88, 971
HpyF10VI GCNNNNNNNGC 1 cut(s) 716
HpyF3I CTNAG 4 cut(s) 357, 365, 504, 1008
Hsp92II CATG 1 cut(s) 740
KroI GCCGGC 1 cut(s) 137
KroNI GCCGGC 1 cut(s) 139
Ksp22I TGATCA 2 cut(s) 580, 679
Kzo9I GATC 4 cut(s) 514, 580, 679, 1060
LmnI GCTCC 2 cut(s) 587, 939
Lsp1109I GCAGC 5 cut(s) 271, 274, 697, 742, 1000
LweI GCATC 2 cut(s) 196, 763
MaeI CTAG 3 cut(s) 395, 591, 648
MaeIII GTNAC 4 cut(s) 101, 781, 946, 965
MalI GATC 4 cut(s) 516, 582, 681, 1062
MboI GATC 4 cut(s) 514, 580, 679, 1060
MboII GAAGA 4 cut(s) 34, 82, 446, 790
MhlI GDGCHC 2 cut(s) 332, 944
MluCI AATT 7 cut(s) 61, 109, 259, 390, 531, 540, 551
MlyI GAGTC 2 cut(s) 98, 628
MmeI TCCRAC 4 cut(s) 138, 229, 341, 560
MnlI CCTC 6 cut(s) 63, 168, 827, 872, 1003, 1109
MroNI GCCGGC 1 cut(s) 137
MroXI GAANNNNTTC 2 cut(s) 176, 719
MseI TTAA 1 cut(s) 75
MslI CAYNNNNRTG 1 cut(s) 788
MspI CCGG 3 cut(s) 120, 138, 1047
MspR9I CCNGG 1 cut(s) 379
Mva1269I GAATGC 1 cut(s) 258
MvaI CCWGG 1 cut(s) 379
MwoI GCNNNNNNNGC 1 cut(s) 716
NaeI GCCGGC 1 cut(s) 139
NdeI CATATG 1 cut(s) 787
NdeII GATC 4 cut(s) 514, 580, 679, 1060
NgoMIV GCCGGC 1 cut(s) 137
NlaIII CATG 1 cut(s) 740
NmuCI GTSAC 4 cut(s) 101, 781, 946, 965
NspV TTCGAA 2 cut(s) 265, 555
OliI CACNNNNGTG 1 cut(s) 788
PctI GAATGC 1 cut(s) 258
PdiI GCCGGC 1 cut(s) 139
PdmI GAANNNNTTC 2 cut(s) 176, 719
PfeI GAWTC 4 cut(s) 242, 520, 651, 997
PkrI GCNGC 5 cut(s) 286, 289, 712, 732, 1015
PleI GAGTC 2 cut(s) 98, 628
PpsI GAGTC 2 cut(s) 98, 628
PshAI GACNNNNGTC 1 cut(s) 471
Psp124BI GAGCTC 1 cut(s) 944
Psp6I CCWGG 1 cut(s) 377
PspGI CCWGG 1 cut(s) 377
PspPI GGNCC 3 cut(s) 451, 617, 881
PstI CTGCAG 2 cut(s) 292, 732
RseI CAYNNNNRTG 1 cut(s) 788
SacI GAGCTC 1 cut(s) 944
SaqAI TTAA 1 cut(s) 75
SatI GCNGC 5 cut(s) 285, 288, 711, 731, 1014
Sau3AI GATC 4 cut(s) 514, 580, 679, 1060
Sau96I GGNCC 3 cut(s) 451, 617, 881
SchI GAGTC 2 cut(s) 98, 628
ScrFI CCNGG 1 cut(s) 379
SduI GDGCHC 2 cut(s) 332, 944
SfaNI GCATC 2 cut(s) 196, 763
SfcI CTRYAG 2 cut(s) 288, 728
SfuI TTCGAA 2 cut(s) 265, 555
SinI GGWCC 2 cut(s) 617, 881
SmiMI CAYNNNNRTG 1 cut(s) 788
SmlI CTYRAG 1 cut(s) 1100
SmoI CTYRAG 1 cut(s) 1100
Sse9I AATT 7 cut(s) 61, 109, 259, 390, 531, 540, 551
SsiI CCGC 3 cut(s) 135, 344, 429
SspMI CTAG 3 cut(s) 395, 591, 648
SstI GAGCTC 1 cut(s) 944
StyD4I CCNGG 1 cut(s) 377
TaaI ACNGT 2 cut(s) 88, 971
TaqI TCGA 3 cut(s) 107, 265, 555
TasI AATT 7 cut(s) 61, 109, 259, 390, 531, 540, 551
TfiI GAWTC 4 cut(s) 242, 520, 651, 997
Tru1I TTAA 1 cut(s) 75
Tru9I TTAA 1 cut(s) 75
TscAI CASTG 3 cut(s) 627, 970, 1012
TseFI GTSAC 4 cut(s) 101, 781, 946, 965
TseI GCWGC 5 cut(s) 284, 287, 710, 730, 1013
Tsp45I GTSAC 4 cut(s) 101, 781, 946, 965
TspDTI ATGAA 4 cut(s) 7, 227, 725, 989
TspGWI ACGGA 1 cut(s) 855
TspRI CASTG 3 cut(s) 627, 970, 1012
VpaK11BI GGWCC 2 cut(s) 617, 881
XapI RAATTY 4 cut(s) 109, 259, 390, 551
XmiI GTMKAC 2 cut(s) 296, 1053
XmnI GAANNNNTTC 2 cut(s) 176, 719
XspI CTAG 3 cut(s) 395, 591, 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.