Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0002437

Physical Location & Seq

Genomic Coordinates Forward (+)

22265839 .. 22267360

Gene Structure 1522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g20950.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGCTACCAAAATCTGCATTATCCAAATTCTCACATTGATTTCCATCTTCTTGCCTCTTTCCAAATCCATCCACTTCAACCACCCTGCCGTTTTCAACTTTGGTGATTCGAATTCCGACACTGGCAACCTTGTTTCCGCAGGCATTGAGACCATTATTTCTCCTTATGGACAATCTTATTTCAAAGCCCCATATGGGAGATACTCCGATGGCCGCCTGATCGTCGATTTTCTTATGGATGCAATGGAGCTTCCGTTTCTCAATGCCTACTTGGATTCAGTTGGCCTGCCGAGTTTCAAAAATGGTTGCAACTTTGCCGCGGCGGGGTCAACTATACTTCCTGCAACTGCAACATCGATCAGCCCATTTTCTTTCGGGGTCCAGGTCTCCCAGTTTTTTAGATTCAAAGCCAAGGTTCTTGAATTGCTAGCTGAAGGTAAGAGCTTTCCCAAGTATCTGCCTACGGAAGATTTTTTTGCGAAAGGGCTCTACATGTTCGATATAGGCCAGAATGATCTCGCTGGTGCATTTTATTCGAAATCATTGGATGAGATTCTCGCGTCTATTCCAACGATTTTGACAGAATTCGAAACTGGAGTAAAGAGATTATATGACCAAGGAGGTAGGAACTTTTGGATACACAACACAGGTCCTCTCGGATGCTTGACGCAGAATGTTGCCAAGTTTGGAACTGATCCCTCGAAGCTTGACGAACAAGGATGCGTGAGCGACCACAACCAAGCTGCTAAACTCTTTAACCTGCAGCTTCATGCTCTCACCAAAAAGTTGCAAGGCCAGTACTCAAATGCAAGTGTCATATATGTTGATATCTTTTCGATCAAATTTGAGCTCATTTCAAATTATTCGAAAAATGGATTTGAGCAACCTATTATGGCTTGCTGCGGGTACGGAGGTCCCCCGTTGAACTACGACAGTCACATTACCTGTGGACAAACAAAGACGTTGAACGGAACAAATGTCACGGCCAAAGGATGCACAGATAGTTCTGATTACATTAGTTGGGATGGAATTCATTACACCGAAGCTGCGAATCAGTATGTCTCGTCCAAGATACTCACCGGGAAGTACTCTGATCCGCCCTTCTCGGATAAAATGCCTTTCCTTCTGAAGCTCAAGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00901 ko01110 map00901 map01110

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

381

Amino Acids

41.79

Weight (kDa)

6.17

Isoelectric Point (pI)

34.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54790 AT1G54790 AT1G54790
fragaria_vesca	FvH4_6g05321 FvH4_6g05321 FvH4_6g05321 FvH4_6g05330 FvH4_6g05330 FvH4_6g05330 FvH4_6g05330
malus_domestica	MD04G1209200.v1.1 MD04G1209300.v1.1 MD12G1223900.v1.1
prunus_persica	Prupe.6G330300_v2.0.a1 Prupe.6G330300_v2.0.a1 Prupe.6G330300_v2.0.a1 Prupe.6G330300_v2.0.a1
pyrus_communis	pycom04g18540 pycom04g18550 pycom12g20930 pycom12g20950
rosa_chinensis	RchiOBHm_Chr3g0454071 RchiOBHm_Chr3g0454091
rosa_laevigata	RLG00000025484
rosa_multiflora	Rmu_sc0020696.1_g000003 Rmu_sc0020696.1_g000004 Rmu_sc0026189.1_g000003 Rmu_sc0026189.1_g000004 Rmu_sc0040155.1_g000002
rosa_roxburghii	Rroxscaffold_6G00430880
rosa_rugosa	Rorug02G0652900
rosa_samantha	Rh3AG055700 Rh3AG055800 Rh3BG057100 Rh3BG057200 Rh3CG056400 Rh3CG056500 Rh3DG057700 Rh3DG057800
rosa_wichuraiana	Rw3G004270 Rw3G004280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	768
AccII	CGCG	2 cut(s)	320, 560
AciI	CCGC	7 cut(s)	138, 214, 318, 320, 323, 903, 1097
AclWI	GGATC	2 cut(s)	689, 1088
AcoI	YGGCCR	2 cut(s)	211, 984
AcsI	RAATTY	5 cut(s)	27, 112, 584, 842, 1029
AcuI	CTGAAG	1 cut(s)	453
AfaI	GTAC	3 cut(s)	800, 908, 1088
AfiI	CCNNNNNNNGG	2 cut(s)	195, 324
AflIII	ACRYGT	1 cut(s)	492
AgsI	TTSAA	9 cut(s)	79, 97, 184, 298, 406, 422, 858, 925, 967
AjnI	CCWGG	1 cut(s)	381
AluBI	AGCT	9 cut(s)	250, 431, 444, 706, 743, 766, 850, 1046, 1132
AluI	AGCT	9 cut(s)	250, 431, 444, 706, 743, 766, 850, 1046, 1132
Alw21I	GWGCWC	1 cut(s)	852
Alw26I	GTCTC	3 cut(s)	143, 391, 1066
AlwI	GGATC	2 cut(s)	689, 1088
AoxI	GGCC	5 cut(s)	211, 283, 505, 793, 984
ApeKI	GCWGC	4 cut(s)	743, 763, 900, 1046
ApoI	RAATTY	5 cut(s)	27, 112, 584, 842, 1029
AspS9I	GGNCC	3 cut(s)	379, 650, 914
AsuC2I	CCSGG	1 cut(s)	1081
AsuHPI	GGTGA	3 cut(s)	116, 769, 1069
AsuII	TTCGAA	4 cut(s)	110, 536, 588, 866
AsuNHI	GCTAGC	1 cut(s)	427
AvaII	GGWCC	3 cut(s)	379, 650, 914
BaeI	ACNNNNGTAYC	2 cut(s)	898, 931
BanII	GRGCYC	2 cut(s)	489, 852
Bbv12I	GWGCWC	1 cut(s)	852
BbvI	GCAGC	4 cut(s)	730, 775, 887, 1033
BccI	CCATC	4 cut(s)	53, 77, 203, 1019
BceAI	ACGGC	2 cut(s)	74, 999
BcgI	CGANNNNNNTGC	2 cut(s)	516, 550
BciT130I	CCWGG	1 cut(s)	383
BciVI	GTATCC	1 cut(s)	630
BcnI	CCSGG	1 cut(s)	1081
BcoDI	GTCTC	3 cut(s)	143, 391, 1066
BfaI	CTAG	1 cut(s)	428
BfmI	CTRYAG	1 cut(s)	761
BfuAI	ACCTGC	1 cut(s)	768
BfuI	GTATCC	1 cut(s)	630
BisI	GCNGC	7 cut(s)	214, 318, 321, 744, 764, 901, 1047
BlsI	GCNGC	7 cut(s)	215, 319, 322, 745, 765, 902, 1048
BmcAI	AGTACT	2 cut(s)	800, 1088
Bme1390I	CCNGG	2 cut(s)	383, 1081
Bme18I	GGWCC	3 cut(s)	379, 650, 914
BmgT120I	GGNCC	3 cut(s)	379, 650, 914
BmiI	GGNNCC	2 cut(s)	380, 916
BmrFI	CCNGG	2 cut(s)	383, 1081
BmrI	ACTGGG	1 cut(s)	385
BmsI	GCATC	4 cut(s)	229, 650, 710, 983
BmtI	GCTAGC	1 cut(s)	431
BmuI	ACTGGG	1 cut(s)	385
BpmI	CTGGAG	1 cut(s)	615
Bpu14I	TTCGAA	4 cut(s)	110, 536, 588, 866
BpuEI	CTTGAG	1 cut(s)	1118
BpuMI	CCSGG	1 cut(s)	1081
Bsa29I	ATCGAT	1 cut(s)	356
BsaBI	GATNNNNATC	1 cut(s)	44
BsaI	GGTCTC	2 cut(s)	143, 391
BsaJI	CCNNGG	3 cut(s)	318, 411, 616
BsaXI	ACNNNNNCTCC	2 cut(s)	239, 269
Bsc4I	CCNNNNNNNGG	2 cut(s)	195, 324
Bse1I	ACTGG	4 cut(s)	127, 391, 598, 796
Bse3DI	GCAATG	1 cut(s)	249
Bse8I	GATNNNNATC	1 cut(s)	44
BseBI	CCWGG	1 cut(s)	383
BseCI	ATCGAT	1 cut(s)	356
BseDI	CCNNGG	3 cut(s)	318, 411, 616
BseGI	GGATG	7 cut(s)	69, 244, 553, 665, 725, 998, 1030
BseJI	GATNNNNATC	1 cut(s)	44
BseLI	CCNNNNNNNGG	2 cut(s)	195, 324
BseMI	GCAATG	1 cut(s)	249
BseNI	ACTGG	4 cut(s)	127, 391, 598, 796
BseXI	GCAGC	4 cut(s)	730, 775, 887, 1033
Bsh1236I	CGCG	2 cut(s)	320, 560
BshFI	GGCC	5 cut(s)	213, 285, 507, 795, 986
BshVI	ATCGAT	1 cut(s)	356
BsiHKAI	GWGCWC	1 cut(s)	852
BsiSI	CCGG	1 cut(s)	1080
BslFI	GGGAC	1 cut(s)	900
BslI	CCNNNNNNNGG	2 cut(s)	195, 324
BsmAI	GTCTC	3 cut(s)	143, 391, 1066
BsmFI	GGGAC	1 cut(s)	900
BsnI	GGCC	5 cut(s)	213, 285, 507, 795, 986
Bso31I	GGTCTC	2 cut(s)	143, 391
Bsp119I	TTCGAA	4 cut(s)	110, 536, 588, 866
Bsp1286I	GDGCHC	2 cut(s)	489, 852
Bsp143I	GATC	6 cut(s)	219, 357, 514, 694, 837, 1093
BspACI	CCGC	7 cut(s)	138, 214, 318, 320, 323, 903, 1097
BspANI	GGCC	5 cut(s)	213, 285, 507, 795, 986
BspDI	ATCGAT	1 cut(s)	356
BspFNI	CGCG	2 cut(s)	320, 560
BspLI	GGNNCC	2 cut(s)	380, 916
BspMAI	CTGCAG	1 cut(s)	765
BspMI	ACCTGC	1 cut(s)	768
BspOI	GCTAGC	1 cut(s)	431
BspPI	GGATC	2 cut(s)	689, 1088
BspT104I	TTCGAA	4 cut(s)	110, 536, 588, 866
BspTNI	GGTCTC	2 cut(s)	143, 391
BsrDI	GCAATG	1 cut(s)	249
BsrI	ACTGG	4 cut(s)	127, 391, 598, 796
BssECI	CCNNGG	3 cut(s)	318, 411, 616
BssMI	GATC	6 cut(s)	219, 357, 514, 694, 837, 1093
BssT1I	CCWWGG	2 cut(s)	411, 616
Bst2UI	CCWGG	1 cut(s)	383
Bst4CI	ACNGT	1 cut(s)	935
BstBI	TTCGAA	4 cut(s)	110, 536, 588, 866
BstC8I	GCNNGC	4 cut(s)	142, 287, 429, 898
BstDSI	CCRYGG	1 cut(s)	318
BstF5I	GGATG	7 cut(s)	69, 244, 553, 665, 725, 998, 1030
BstFNI	CGCG	2 cut(s)	320, 560
BstKTI	GATC	6 cut(s)	222, 360, 517, 697, 840, 1096
BstMAI	GTCTC	3 cut(s)	143, 391, 1066
BstMBI	GATC	6 cut(s)	219, 357, 514, 694, 837, 1093
BstNI	CCWGG	1 cut(s)	383
BstNSI	RCATGY	1 cut(s)	496
BstSCI	CCNGG	2 cut(s)	381, 1079
BstSFI	CTRYAG	1 cut(s)	761
BstUI	CGCG	2 cut(s)	320, 560
BstV1I	GCAGC	4 cut(s)	730, 775, 887, 1033
Bsu15I	ATCGAT	1 cut(s)	356
BsuI	GTATCC	1 cut(s)	630
BsuRI	GGCC	5 cut(s)	213, 285, 507, 795, 986
BsuTUI	ATCGAT	1 cut(s)	356
BtgI	CCRYGG	1 cut(s)	318
BtsCI	GGATG	7 cut(s)	69, 244, 553, 665, 725, 998, 1030
BtsIMutI	CAGTG	1 cut(s)	120
BveI	ACCTGC	1 cut(s)	768
Cac8I	GCNNGC	4 cut(s)	142, 287, 429, 898
Cfr13I	GGNCC	3 cut(s)	379, 650, 914
Cfr42I	CCGCGG	1 cut(s)	321
ClaI	ATCGAT	1 cut(s)	356
CseI	GACGC	2 cut(s)	549, 676
Csp6I	GTAC	3 cut(s)	799, 907, 1087
CviAII	CATG	2 cut(s)	493, 770
CviQI	GTAC	3 cut(s)	799, 907, 1087
DpnI	GATC	6 cut(s)	221, 359, 516, 696, 839, 1095
DpnII	GATC	6 cut(s)	219, 357, 514, 694, 837, 1093
EaeI	YGGCCR	2 cut(s)	211, 984
EciI	GGCGGA	1 cut(s)	1086
Ecl136II	GAGCTC	1 cut(s)	850
Eco130I	CCWWGG	2 cut(s)	411, 616
Eco24I	GRGCYC	2 cut(s)	489, 852
Eco31I	GGTCTC	2 cut(s)	143, 391
Eco32I	GATATC	1 cut(s)	829
Eco47I	GGWCC	3 cut(s)	379, 650, 914
Eco53kI	GAGCTC	1 cut(s)	850
Eco57I	CTGAAG	1 cut(s)	453
EcoICRI	GAGCTC	1 cut(s)	850
EcoO109I	RGGNCCY	2 cut(s)	650, 914
EcoRI	GAATTC	3 cut(s)	112, 584, 1029
EcoRII	CCWGG	1 cut(s)	381
EcoRV	GATATC	1 cut(s)	829
EcoT14I	CCWWGG	2 cut(s)	411, 616
EcoT38I	GRGCYC	2 cut(s)	489, 852
ErhI	CCWWGG	2 cut(s)	411, 616
FaeI	CATG	2 cut(s)	496, 773
FaqI	GGGAC	1 cut(s)	900
FatI	CATG	2 cut(s)	492, 769
FauI	CCCGC	2 cut(s)	316, 896
FauNDI	CATATG	1 cut(s)	193
Fnu4HI	GCNGC	7 cut(s)	214, 318, 321, 744, 764, 901, 1047
FokI	GGATG	7 cut(s)	56, 251, 560, 672, 732, 1005, 1037
FriOI	GRGCYC	2 cut(s)	489, 852
Fsp4HI	GCNGC	7 cut(s)	214, 318, 321, 744, 764, 901, 1047
FspBI	CTAG	1 cut(s)	428
GluI	GCNGC	7 cut(s)	214, 318, 321, 744, 764, 901, 1047
GsuI	CTGGAG	1 cut(s)	615
HaeIII	GGCC	5 cut(s)	213, 285, 507, 795, 986
HapII	CCGG	1 cut(s)	1080
HgaI	GACGC	2 cut(s)	549, 676
Hin1II	CATG	2 cut(s)	496, 773
HincII	GTYRAC	1 cut(s)	330
HindII	GTYRAC	1 cut(s)	330
HindIII	AAGCTT	1 cut(s)	704
HinfI	GANTC	5 cut(s)	107, 275, 402, 553, 1051
HpaII	CCGG	1 cut(s)	1080
HphI	GGTGA	3 cut(s)	116, 769, 1069
Hpy166II	GTNNAC	2 cut(s)	330, 950
Hpy188I	TCNGA	8 cut(s)	118, 208, 659, 1009, 1093, 1108, 1128, 1142
Hpy188III	TCNNGA	1 cut(s)	419
Hpy8I	GTNNAC	2 cut(s)	330, 950
Hpy99I	CGWCG	1 cut(s)	227
HpyAV	CCTTC	3 cut(s)	428, 1111, 1133
HpyCH4III	ACNGT	1 cut(s)	935
HpyCH4IV	ACGT	1 cut(s)	962
HpySE526I	ACGT	1 cut(s)	962
Hsp92II	CATG	2 cut(s)	496, 773
KspI	CCGCGG	1 cut(s)	321
Kzo9I	GATC	6 cut(s)	219, 357, 514, 694, 837, 1093
LmnI	GCTCC	1 cut(s)	247
Lsp1109I	GCAGC	4 cut(s)	730, 775, 887, 1033
LweI	GCATC	4 cut(s)	229, 650, 710, 983
MaeI	CTAG	1 cut(s)	428
MaeII	ACGT	1 cut(s)	962
MaeIII	GTNAC	2 cut(s)	935, 979
MalI	GATC	6 cut(s)	221, 359, 516, 696, 839, 1095
MboI	GATC	6 cut(s)	219, 357, 514, 694, 837, 1093
MboII	GAAGA	2 cut(s)	40, 479
MhlI	GDGCHC	2 cut(s)	489, 852
MluCI	AATT	7 cut(s)	27, 112, 422, 584, 842, 859, 1029
MmeI	TCCRAC	2 cut(s)	141, 593
MnlI	CCTC	5 cut(s)	66, 614, 663, 709, 905
MseI	TTAA	1 cut(s)	756
MspA1I	CMGCKG	1 cut(s)	320
MspI	CCGG	1 cut(s)	1080
MspR9I	CCNGG	2 cut(s)	383, 1081
MvaI	CCWGG	1 cut(s)	383
MvnI	CGCG	2 cut(s)	320, 560
NciI	CCSGG	1 cut(s)	1081
NdeI	CATATG	1 cut(s)	193
NdeII	GATC	6 cut(s)	219, 357, 514, 694, 837, 1093
NheI	GCTAGC	1 cut(s)	427
NlaIII	CATG	2 cut(s)	496, 773
NlaIV	GGNNCC	2 cut(s)	380, 916
NmeAIII	GCCGAG	1 cut(s)	315
NmuCI	GTSAC	2 cut(s)	935, 979
NspI	RCATGY	1 cut(s)	496
NspV	TTCGAA	4 cut(s)	110, 536, 588, 866
PciI	ACATGT	1 cut(s)	492
PfeI	GAWTC	5 cut(s)	107, 275, 402, 553, 1051
PkrI	GCNGC	7 cut(s)	215, 319, 322, 745, 765, 902, 1048
PpuMI	RGGWCCY	2 cut(s)	650, 914
PscI	ACATGT	1 cut(s)	492
Psp124BI	GAGCTC	1 cut(s)	852
Psp5II	RGGWCCY	2 cut(s)	650, 914
Psp6I	CCWGG	1 cut(s)	381
PspGI	CCWGG	1 cut(s)	381
PspN4I	GGNNCC	2 cut(s)	380, 916
PspPI	GGNCC	3 cut(s)	379, 650, 914
PspPPI	RGGWCCY	2 cut(s)	650, 914
PstI	CTGCAG	1 cut(s)	765
RsaI	GTAC	3 cut(s)	800, 908, 1088
RsaNI	GTAC	3 cut(s)	799, 907, 1087
SacI	GAGCTC	1 cut(s)	852
SacII	CCGCGG	1 cut(s)	321
SaqAI	TTAA	1 cut(s)	756
SatI	GCNGC	7 cut(s)	214, 318, 321, 744, 764, 901, 1047
Sau3AI	GATC	6 cut(s)	219, 357, 514, 694, 837, 1093
Sau96I	GGNCC	3 cut(s)	379, 650, 914
ScaI	AGTACT	2 cut(s)	800, 1088
ScrFI	CCNGG	2 cut(s)	383, 1081
SduI	GDGCHC	2 cut(s)	489, 852
SfaNI	GCATC	4 cut(s)	229, 650, 710, 983
SfcI	CTRYAG	1 cut(s)	761
Sfr303I	CCGCGG	1 cut(s)	321
SfuI	TTCGAA	4 cut(s)	110, 536, 588, 866
SgrBI	CCGCGG	1 cut(s)	321
SinI	GGWCC	3 cut(s)	379, 650, 914
SmlI	CTYRAG	1 cut(s)	1133
SmoI	CTYRAG	1 cut(s)	1133
Sse9I	AATT	7 cut(s)	27, 112, 422, 584, 842, 859, 1029
SsiI	CCGC	7 cut(s)	138, 214, 318, 320, 323, 903, 1097
SspMI	CTAG	1 cut(s)	428
SstI	GAGCTC	1 cut(s)	852
StyD4I	CCNGG	2 cut(s)	381, 1079
StyI	CCWWGG	2 cut(s)	411, 616
TaaI	ACNGT	1 cut(s)	935
TaiI	ACGT	1 cut(s)	965
TaqI	TCGA	9 cut(s)	110, 225, 356, 498, 536, 588, 701, 836, 866
TasI	AATT	7 cut(s)	27, 112, 422, 584, 842, 859, 1029
TatI	WGTACW	2 cut(s)	798, 1086
TauI	GCSGC	3 cut(s)	216, 320, 323
TfiI	GAWTC	5 cut(s)	107, 275, 402, 553, 1051
Tru1I	TTAA	1 cut(s)	756
Tru9I	TTAA	1 cut(s)	756
TscAI	CASTG	1 cut(s)	127
TseFI	GTSAC	2 cut(s)	935, 979
TseI	GCWGC	4 cut(s)	743, 763, 900, 1046
Tsp45I	GTSAC	2 cut(s)	935, 979
TspDTI	ATGAA	2 cut(s)	758, 1022
TspGWI	ACGGA	4 cut(s)	243, 479, 924, 984
TspRI	CASTG	1 cut(s)	127
VpaK11BI	GGWCC	3 cut(s)	379, 650, 914
XapI	RAATTY	5 cut(s)	27, 112, 584, 842, 1029
XceI	RCATGY	1 cut(s)	496
XspI	CTAG	1 cut(s)	428
ZrmI	AGTACT	2 cut(s)	800, 1088

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.