Rh3DG057700

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0002437
Physical Location & Seq
Reverse (-)
3909082 .. 3911102
2021 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG057700.1

Sequence Viewer

Length: 1164 bp
ATGGCTGCCAAGAATCTCAATGCTTTCCGTATTCTCACCTTACTCTGCTTCGTTCTTTTACGTTTTGCAAACTCACTAAACTATCCCGCCGTTTTCAACTTTGGTGATTCGAACTCCGACACCGGCGAGCTGACCGCCGGCATCGGTTTCCGGCTTCCTCATCCTTATGGACAGCTTTACTTCAATGCTTCGTTGTCATCGGGTGGGAGGTTTTCCGATGGCCGTCTCATCATAGATTTTCTCATGGGTGCAATGAACCTTCCATTTCTAAATCCCTATTTGGATTCAGTTGGCATGCCAAGTTTCCGAAATGGGTGCAATTTTGCTGCTGGAGGGGCTACTACACATCCAGCAACTGCATCATCTGTCTGCCCTTTTTCATTTGGGGTTCAGGTCTCTCAGTTTTCGCGATTCAAATCCAGGGCTCTTCAATTGCTAGCTGCTAAAGGTAAAAAACTTGAAAATTATCTACCCTCGGAAGATTCCTTTCAGAAGGGGCTTTACGTGTTTGATATCGGCCAAAATGATCTTGCTGGTGCATTTTATTCTAAAACACTGGATCAGATTCTTGCTTTTATTCCAACAATTTTGGCACAGTTTGAATCAGGAATAAAGAGATTATATGATCAAGGTGCTAGGAACTTTTGGATACACAACACAGGTCCTCTGGGGTGCTTGACTCAGAATGTGGCCACATTTGGAACCAACCCATCAAAACTTGATGAGCATGGATGTGTTAGCGCACACAACCAAGCAGCTAAAATCTTCAACCTGCAGCTTCATGATCTCAGTAAAAAGTTGCAAGGCCAATACTCTGATGCACATATCTCATATGTTGATATCTTCTCTATAAAATATGACCTTATTGCAAATTATTCTCGATACGGGTTTCAGCAACCTATTATGGCTTGCTGTGGGTATGGAGGTCCACCTTTGAACTATAACAGTCGGGTTTCTTGTGGATCAACAAGGGTCTTGAATGGCACGTCTGTCACAGCCAAAGGGCGTAGCAATAGTGCTGTGTACGTTAATTGGGATGGAATTCATTACACAGAAGCTGCAAATCAGTTTGTCTCATCAAAGATACTCACCGGAAAGTATTCTGATCCTCCTTTATCGAACAACATTTCTTTCCTCTCAAGTTTTAAAACCCCAAGGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00901 ko01110 map00901 map01110
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

387

Amino Acids

42.43

Weight (kDa)

9.07

Isoelectric Point (pI)

32.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 31 - 361 7.9e-46 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 780
AccII CGCG 1 cut(s) 409
AciI CCGC 2 cut(s) 87, 135
AclWI GGATC 3 cut(s) 567, 970, 1100
AcoI YGGCCR 3 cut(s) 220, 517, 690
AcsI RAATTY 1 cut(s) 1041
AfaI GTAC 1 cut(s) 1025
AfiI CCNNNNNNNGG 1 cut(s) 1158
AflIII ACRYGT 1 cut(s) 504
AgsI TTSAA 9 cut(s) 97, 184, 415, 431, 461, 602, 769, 937, 979
AjiI CACGTC 1 cut(s) 987
AjnI CCWGG 1 cut(s) 419
AluBI AGCT 6 cut(s) 130, 175, 440, 758, 778, 1058
AluI AGCT 6 cut(s) 130, 175, 440, 758, 778, 1058
Alw26I GTCTC 3 cut(s) 230, 400, 1078
AlwI GGATC 3 cut(s) 567, 970, 1100
AlwNI CAGNNNCTG 2 cut(s) 356, 1058
AoxI GGCC 4 cut(s) 220, 517, 690, 805
ApeKI GCWGC 6 cut(s) 5, 326, 440, 755, 775, 1058
ApoI RAATTY 1 cut(s) 1041
Asp700I GAANNNNTTC 1 cut(s) 1099
AspLEI GCGC 1 cut(s) 743
AspS9I GGNCC 2 cut(s) 662, 926
AsuHPI GGTGA 3 cut(s) 28, 116, 1081
AsuII TTCGAA 1 cut(s) 110
AsuNHI GCTAGC 1 cut(s) 436
AvaII GGWCC 2 cut(s) 662, 926
BalI TGGCCA 1 cut(s) 692
BanII GRGCYC 1 cut(s) 427
BarI GAAGNNNNNNTAC 2 cut(s) 485, 517
BbvI GCAGC 5 cut(s) 313, 427, 767, 787, 1045
BccI CCATC 3 cut(s) 212, 718, 1031
BceAI ACGGC 2 cut(s) 74, 207
BcgI CGANNNNNNTGC 2 cut(s) 297, 331
BciT130I CCWGG 1 cut(s) 421
BciVI GTATCC 1 cut(s) 642
BclI TGATCA 1 cut(s) 625
BcoDI GTCTC 3 cut(s) 230, 400, 1078
BfaI CTAG 2 cut(s) 437, 636
BfmI CTRYAG 1 cut(s) 773
BfuAI ACCTGC 1 cut(s) 780
BfuI GTATCC 1 cut(s) 642
BisI GCNGC 6 cut(s) 6, 327, 441, 756, 776, 1059
BlsI GCNGC 6 cut(s) 7, 328, 442, 757, 777, 1060
Bme1390I CCNGG 1 cut(s) 421
Bme18I GGWCC 2 cut(s) 662, 926
BmgBI CACGTC 1 cut(s) 987
BmgT120I GGNCC 2 cut(s) 662, 926
BmiI GGNNCC 1 cut(s) 703
BmrFI CCNGG 1 cut(s) 421
BmsI GCATC 3 cut(s) 150, 368, 808
BmtI GCTAGC 1 cut(s) 440
BpmI CTGGAG 1 cut(s) 351
Bpu14I TTCGAA 1 cut(s) 110
BpuEI CTTGAG 1 cut(s) 1123
BsaAI YACGTR 1 cut(s) 505
BsaBI GATNNNNATC 1 cut(s) 415
BsaI GGTCTC 1 cut(s) 400
BsaJI CCNNGG 3 cut(s) 420, 474, 1154
BsaWI WCCGGW 1 cut(s) 1091
Bsc4I CCNNNNNNNGG 1 cut(s) 1158
Bse118I RCCGGY 2 cut(s) 122, 137
Bse1I ACTGG 1 cut(s) 561
Bse3DI GCAATG 1 cut(s) 258
Bse8I GATNNNNATC 1 cut(s) 415
BseBI CCWGG 1 cut(s) 421
BseDI CCNNGG 3 cut(s) 420, 474, 1154
BseGI GGATG 4 cut(s) 160, 346, 737, 1042
BseJI GATNNNNATC 1 cut(s) 415
BseLI CCNNNNNNNGG 1 cut(s) 1158
BseMI GCAATG 1 cut(s) 258
BseMII CTCAG 3 cut(s) 413, 695, 802
BseNI ACTGG 1 cut(s) 561
BseXI GCAGC 5 cut(s) 313, 427, 767, 787, 1045
Bsh1236I CGCG 1 cut(s) 409
BshFI GGCC 4 cut(s) 222, 519, 692, 807
BsiSI CCGG 4 cut(s) 123, 138, 151, 1092
BslI CCNNNNNNNGG 1 cut(s) 1158
BsmAI GTCTC 3 cut(s) 230, 400, 1078
BsmBI CGTCTC 1 cut(s) 230
BsnI GGCC 4 cut(s) 222, 519, 692, 807
Bso31I GGTCTC 1 cut(s) 400
Bsp119I TTCGAA 1 cut(s) 110
Bsp1286I GDGCHC 1 cut(s) 427
Bsp143I GATC 6 cut(s) 526, 559, 625, 784, 962, 1105
Bsp68I TCGCGA 1 cut(s) 409
BspACI CCGC 2 cut(s) 87, 135
BspANI GGCC 4 cut(s) 222, 519, 692, 807
BspCNI CTCAG 3 cut(s) 412, 694, 801
BspFNI CGCG 1 cut(s) 409
BspHI TCATGA 1 cut(s) 781
BspLI GGNNCC 1 cut(s) 703
BspMAI CTGCAG 1 cut(s) 777
BspMI ACCTGC 1 cut(s) 780
BspOI GCTAGC 1 cut(s) 440
BspPI GGATC 3 cut(s) 567, 970, 1100
BspQI GCTCTTC 1 cut(s) 432
BspT104I TTCGAA 1 cut(s) 110
BspTNI GGTCTC 1 cut(s) 400
BsrDI GCAATG 1 cut(s) 258
BsrFI RCCGGY 2 cut(s) 122, 137
BsrI ACTGG 1 cut(s) 561
BssAI RCCGGY 2 cut(s) 122, 137
BssECI CCNNGG 3 cut(s) 420, 474, 1154
BssMI GATC 6 cut(s) 526, 559, 625, 784, 962, 1105
BssT1I CCWWGG 1 cut(s) 1154
Bst2UI CCWGG 1 cut(s) 421
Bst4CI ACNGT 2 cut(s) 597, 947
Bst6I CTCTTC 1 cut(s) 432
BstBAI YACGTR 1 cut(s) 505
BstBI TTCGAA 1 cut(s) 110
BstC8I GCNNGC 5 cut(s) 128, 139, 296, 438, 910
BstDEI CTNAG 3 cut(s) 399, 681, 788
BstF5I GGATG 4 cut(s) 160, 346, 737, 1042
BstFNI CGCG 1 cut(s) 409
BstHHI GCGC 1 cut(s) 743
BstKTI GATC 6 cut(s) 529, 562, 628, 787, 965, 1108
BstMAI GTCTC 3 cut(s) 230, 400, 1078
BstMBI GATC 6 cut(s) 526, 559, 625, 784, 962, 1105
BstMWI GCNNNNNNNGC 1 cut(s) 335
BstNI CCWGG 1 cut(s) 421
BstNSI RCATGY 1 cut(s) 298
BstSCI CCNGG 1 cut(s) 419
BstSFI CTRYAG 1 cut(s) 773
BstUI CGCG 1 cut(s) 409
BstV1I GCAGC 5 cut(s) 313, 427, 767, 787, 1045
BsuI GTATCC 1 cut(s) 642
BsuRI GGCC 4 cut(s) 222, 519, 692, 807
BtrI CACGTC 1 cut(s) 987
BtsCI GGATG 4 cut(s) 160, 346, 737, 1042
BtsIMutI CAGTG 1 cut(s) 554
BtuMI TCGCGA 1 cut(s) 409
BveI ACCTGC 1 cut(s) 780
Cac8I GCNNGC 5 cut(s) 128, 139, 296, 438, 910
CaiI CAGNNNCTG 2 cut(s) 356, 1058
CciI TCATGA 1 cut(s) 781
CfoI GCGC 1 cut(s) 743
Cfr10I RCCGGY 2 cut(s) 122, 137
Cfr13I GGNCC 2 cut(s) 662, 926
Csp6I GTAC 1 cut(s) 1024
CviAII CATG 4 cut(s) 244, 295, 728, 782
CviQI GTAC 1 cut(s) 1024
DdeI CTNAG 3 cut(s) 399, 681, 788
DpnI GATC 6 cut(s) 528, 561, 627, 786, 964, 1107
DpnII GATC 6 cut(s) 526, 559, 625, 784, 962, 1105
DraI TTTAAA 1 cut(s) 1147
EaeI YGGCCR 3 cut(s) 220, 517, 690
Eam1104I CTCTTC 1 cut(s) 432
EarI CTCTTC 1 cut(s) 432
Eco130I CCWWGG 1 cut(s) 1154
Eco24I GRGCYC 1 cut(s) 427
Eco31I GGTCTC 1 cut(s) 400
Eco32I GATATC 2 cut(s) 514, 841
Eco47I GGWCC 2 cut(s) 662, 926
EcoO109I RGGNCCY 1 cut(s) 662
EcoRI GAATTC 1 cut(s) 1041
EcoRII CCWGG 1 cut(s) 419
EcoRV GATATC 2 cut(s) 514, 841
EcoT14I CCWWGG 1 cut(s) 1154
EcoT38I GRGCYC 1 cut(s) 427
ErhI CCWWGG 1 cut(s) 1154
Esp3I CGTCTC 1 cut(s) 230
FaeI CATG 4 cut(s) 247, 298, 731, 785
FatI CATG 4 cut(s) 243, 294, 727, 781
FauI CCCGC 1 cut(s) 94
FauNDI CATATG 1 cut(s) 832
FbaI TGATCA 1 cut(s) 625
Fnu4HI GCNGC 6 cut(s) 6, 327, 441, 756, 776, 1059
FokI GGATG 4 cut(s) 147, 333, 744, 1049
FriOI GRGCYC 1 cut(s) 427
Fsp4HI GCNGC 6 cut(s) 6, 327, 441, 756, 776, 1059
FspBI CTAG 2 cut(s) 437, 636
GlaI GCGC 1 cut(s) 742
GluI GCNGC 6 cut(s) 6, 327, 441, 756, 776, 1059
GsuI CTGGAG 1 cut(s) 351
HaeIII GGCC 4 cut(s) 222, 519, 692, 807
HapII CCGG 4 cut(s) 123, 138, 151, 1092
HhaI GCGC 1 cut(s) 743
Hin1II CATG 4 cut(s) 247, 298, 731, 785
Hin6I GCGC 1 cut(s) 741
HinP1I GCGC 1 cut(s) 741
HinfI GANTC 8 cut(s) 13, 107, 284, 411, 482, 565, 602, 679
HpaII CCGG 4 cut(s) 123, 138, 151, 1092
HphI GGTGA 3 cut(s) 28, 116, 1081
Hpy166II GTNNAC 2 cut(s) 929, 1024
Hpy188I TCNGA 9 cut(s) 118, 217, 308, 478, 492, 564, 684, 817, 1105
Hpy188III TCNNGA 5 cut(s) 408, 606, 782, 879, 976
Hpy8I GTNNAC 2 cut(s) 929, 1024
HpyAV CCTTC 2 cut(s) 269, 487
HpyCH4III ACNGT 2 cut(s) 597, 947
HpyCH4IV ACGT 4 cut(s) 61, 504, 986, 1026
HpyF10VI GCNNNNNNNGC 1 cut(s) 335
HpyF3I CTNAG 3 cut(s) 399, 681, 788
HpySE526I ACGT 4 cut(s) 61, 504, 986, 1026
Hsp92II CATG 4 cut(s) 247, 298, 731, 785
HspAI GCGC 1 cut(s) 741
KroI GCCGGC 1 cut(s) 137
KroNI GCCGGC 1 cut(s) 139
Ksp22I TGATCA 1 cut(s) 625
Kzo9I GATC 6 cut(s) 526, 559, 625, 784, 962, 1105
LguI GCTCTTC 1 cut(s) 432
Lsp1109I GCAGC 5 cut(s) 313, 427, 767, 787, 1045
LweI GCATC 3 cut(s) 150, 368, 808
MaeI CTAG 2 cut(s) 437, 636
MaeII ACGT 4 cut(s) 61, 504, 986, 1026
MaeIII GTNAC 1 cut(s) 991
MalI GATC 6 cut(s) 528, 561, 627, 786, 964, 1107
MboI GATC 6 cut(s) 526, 559, 625, 784, 962, 1105
MboII GAAGA 4 cut(s) 419, 491, 757, 835
MfeI CAATTG 1 cut(s) 431
MhlI GDGCHC 1 cut(s) 427
MlsI TGGCCA 1 cut(s) 692
MluCI AATT 7 cut(s) 319, 431, 463, 585, 871, 1030, 1041
MluNI TGGCCA 1 cut(s) 692
MlyI GAGTC 1 cut(s) 673
MmeI TCCRAC 2 cut(s) 141, 605
MnlI CCTC 8 cut(s) 168, 201, 326, 484, 675, 917, 1119, 1145
Mox20I TGGCCA 1 cut(s) 692
MroNI GCCGGC 1 cut(s) 137
MroXI GAANNNNTTC 1 cut(s) 1099
MscI TGGCCA 1 cut(s) 692
MseI TTAA 2 cut(s) 1029, 1146
MslI CAYNNNNRTG 2 cut(s) 165, 732
Msp20I TGGCCA 1 cut(s) 692
MspI CCGG 4 cut(s) 123, 138, 151, 1092
MspR9I CCNGG 1 cut(s) 421
MunI CAATTG 1 cut(s) 431
MvaI CCWGG 1 cut(s) 421
MvnI CGCG 1 cut(s) 409
MwoI GCNNNNNNNGC 1 cut(s) 335
NaeI GCCGGC 1 cut(s) 139
NdeI CATATG 1 cut(s) 832
NdeII GATC 6 cut(s) 526, 559, 625, 784, 962, 1105
NgoMIV GCCGGC 1 cut(s) 137
NheI GCTAGC 1 cut(s) 436
NlaIII CATG 4 cut(s) 247, 298, 731, 785
NlaIV GGNNCC 1 cut(s) 703
NmuCI GTSAC 1 cut(s) 991
NruI TCGCGA 1 cut(s) 409
NspI RCATGY 1 cut(s) 298
NspV TTCGAA 1 cut(s) 110
PaeI GCATGC 1 cut(s) 298
PagI TCATGA 1 cut(s) 781
PciSI GCTCTTC 1 cut(s) 432
PdiI GCCGGC 1 cut(s) 139
PdmI GAANNNNTTC 1 cut(s) 1099
PfeI GAWTC 7 cut(s) 13, 107, 284, 411, 482, 565, 602
PkrI GCNGC 6 cut(s) 7, 328, 442, 757, 777, 1060
PleI GAGTC 1 cut(s) 673
PpsI GAGTC 1 cut(s) 673
Ppu21I YACGTR 1 cut(s) 505
PpuMI RGGWCCY 1 cut(s) 662
Psp5II RGGWCCY 1 cut(s) 662
Psp6I CCWGG 1 cut(s) 419
PspGI CCWGG 1 cut(s) 419
PspN4I GGNNCC 1 cut(s) 703
PspPI GGNCC 2 cut(s) 662, 926
PspPPI RGGWCCY 1 cut(s) 662
PstI CTGCAG 1 cut(s) 777
PstNI CAGNNNCTG 2 cut(s) 356, 1058
RruI TCGCGA 1 cut(s) 409
RsaI GTAC 1 cut(s) 1025
RsaNI GTAC 1 cut(s) 1024
RseI CAYNNNNRTG 2 cut(s) 165, 732
SapI GCTCTTC 1 cut(s) 432
SaqAI TTAA 2 cut(s) 1029, 1146
SatI GCNGC 6 cut(s) 6, 327, 441, 756, 776, 1059
Sau3AI GATC 6 cut(s) 526, 559, 625, 784, 962, 1105
Sau96I GGNCC 2 cut(s) 662, 926
SchI GAGTC 1 cut(s) 673
ScrFI CCNGG 1 cut(s) 421
SduI GDGCHC 1 cut(s) 427
SfaNI GCATC 3 cut(s) 150, 368, 808
SfcI CTRYAG 1 cut(s) 773
SfuI TTCGAA 1 cut(s) 110
SgrAI CRCCGGYG 1 cut(s) 122
SinI GGWCC 2 cut(s) 662, 926
SmiMI CAYNNNNRTG 2 cut(s) 165, 732
SmlI CTYRAG 1 cut(s) 1138
SmoI CTYRAG 1 cut(s) 1138
SphI GCATGC 1 cut(s) 298
Sse9I AATT 7 cut(s) 319, 431, 463, 585, 871, 1030, 1041
SsiI CCGC 2 cut(s) 87, 135
SspMI CTAG 2 cut(s) 437, 636
StyD4I CCNGG 1 cut(s) 419
StyI CCWWGG 1 cut(s) 1154
TaaI ACNGT 2 cut(s) 597, 947
TaiI ACGT 4 cut(s) 64, 507, 989, 1029
TaqI TCGA 3 cut(s) 110, 880, 1118
TasI AATT 7 cut(s) 319, 431, 463, 585, 871, 1030, 1041
TfiI GAWTC 7 cut(s) 13, 107, 284, 411, 482, 565, 602
Tru1I TTAA 2 cut(s) 1029, 1146
Tru9I TTAA 2 cut(s) 1029, 1146
TscAI CASTG 1 cut(s) 561
TseFI GTSAC 1 cut(s) 991
TseI GCWGC 6 cut(s) 5, 326, 440, 755, 775, 1058
Tsp45I GTSAC 1 cut(s) 991
TspDTI ATGAA 4 cut(s) 269, 369, 770, 1034
TspGWI ACGGA 1 cut(s) 17
TspRI CASTG 1 cut(s) 561
VpaK11BI GGWCC 2 cut(s) 662, 926
XapI RAATTY 1 cut(s) 1041
XceI RCATGY 1 cut(s) 298
XmnI GAANNNNTTC 1 cut(s) 1099
XspI CTAG 2 cut(s) 437, 636
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.