Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002437

Physical Location & Seq

Genomic Coordinates Reverse (-)

4273723 .. 4275409

Gene Structure 1687 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42112

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGCTGCCAAGACCTGCATTCTCCAAATCTCCATCTTCTTCCTATTACCTCTTGCCAATTCTATCCACTTCAAGTATCCAACTGTCTTCAACTTTGGTGACTCAAATTCCGACACCGGAAACCTTGTGTCCGCCGGCATTGAGACCCTTGCCCCTCCCAATGGCCAGAGCTACTTCAAAACCCCATCTGGCAGATACTGTGATGGCCGTCTCATCGTCGATTTTCTTATGGATGCAATGAACCTGCCATTTCTAAATGCCTACTTAGATTCAGTTGGAGTGCCGAGTTTCCAAAGAGGGTGTAACTTTGCTGCTGCAGGGTCTACTATACTTCCAGCTTCTCCAACATCTGTGAGCCCATTTTCATTTGCTGTCCAAGTCTCTCAGTTTCTTAGATTCAAAGCCAGGGTTCTTGAAATTCTAGCTAAAGGTAAGAAATTTGAAAAGTATCTTCCCACAGAAGATTTTTTTGGGAAGGGGCTTTATATGTTTGACATTGGCCAAAATGACATTGCTGGTGGATTTTACTCTAAGACATTAGAACAGATTCTCGCTTCAATTCCAACAATTCTGGCAGAATTCGAAACAGGAATAAAGAGACTATATGATCAAGGGGCTAGGAACTTTTGGATACACAATACAGGTCCTGTGGGATGCTTGACTCAGAATGTTGCCAAATTCGGAACAGACCCCTCAAAGCTTGATGATCAAGGATGTGTTAGAGCACACAACCAAGCTGCCAAAACTTTTAACCTGCAGCTTCATGCTCTCACCAAAAAGTTGCAAGGCCAATATACTGATGCAAATGTCACATTTGTTGATATCTTCTCTATAAAATCTAACCTCATTGCAAACTATTCAAAAAATGGATTCGAACAACCTATTATGGCTTGCTGTGGATATGGAGGTCCACCTTTGAACTATGACAGTCAGATAAGCTGTGGGCAAACGAAGGTCTTGAATGGGAGCTCTGTCACAGCCAAAGGGTGCAGTGAAAGTAGTGCCTATGTTAGTTGGGATGGGATTCATTACACTGAGGCTGCAAATCAGTTTGTCTCATCACAGATACTCACCGGAATATATTCTGATCCACCCTTTTCAGACCAAATGCCTTTCCTTCTGGACCTCAAGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00901 ko01110 map00901 map01110

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

378

Amino Acids

41.32

Weight (kDa)

6.51

Isoelectric Point (pI)

38.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	29 - 355	6.5e-45	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54790 AT1G54790 AT1G54790
fragaria_vesca	FvH4_6g05321 FvH4_6g05321 FvH4_6g05321 FvH4_6g05330 FvH4_6g05330 FvH4_6g05330 FvH4_6g05330
malus_domestica	MD04G1209200.v1.1 MD04G1209300.v1.1 MD12G1223900.v1.1
prunus_persica	Prupe.6G330300_v2.0.a1 Prupe.6G330300_v2.0.a1 Prupe.6G330300_v2.0.a1 Prupe.6G330300_v2.0.a1
pyrus_communis	pycom04g18540 pycom04g18550 pycom12g20930 pycom12g20950
rosa_chinensis	RchiOBHm_Chr3g0454071 RchiOBHm_Chr3g0454091
rosa_laevigata	RLG00000025484
rosa_multiflora	Rmu_sc0020696.1_g000003 Rmu_sc0020696.1_g000004 Rmu_sc0026189.1_g000003 Rmu_sc0026189.1_g000004 Rmu_sc0040155.1_g000002
rosa_roxburghii	Rroxscaffold_6G00430880
rosa_rugosa	Rorug02G0652900
rosa_samantha	Rh3AG055700 Rh3AG055800 Rh3BG057100 Rh3BG057200 Rh3CG056400 Rh3CG056500 Rh3DG057700 Rh3DG057800
rosa_wichuraiana	Rw3G004270 Rw3G004280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	23, 252, 762
AccI	GTMKAC	1 cut(s)	323
AciI	CCGC	1 cut(s)	132
AclWI	GGATC	1 cut(s)	1082
AcoI	YGGCCR	3 cut(s)	163, 205, 499
AcsI	RAATTY	5 cut(s)	106, 417, 437, 578, 677
AfiI	CCNNNNNNNGG	1 cut(s)	161
AjnI	CCWGG	1 cut(s)	404
AjuI	GAANNNNNNNTTGG	2 cut(s)	453, 485
AloI	GAACNNNNNNTCC	1 cut(s)	1115
AluBI	AGCT	8 cut(s)	171, 338, 425, 700, 737, 760, 939, 969
AluI	AGCT	8 cut(s)	171, 338, 425, 700, 737, 760, 939, 969
Alw21I	GWGCWC	2 cut(s)	727, 971
Alw26I	GTCTC	5 cut(s)	137, 215, 385, 592, 1060
AlwI	GGATC	1 cut(s)	1082
AlwNI	CAGNNNCTG	2 cut(s)	198, 647
AoxI	GGCC	4 cut(s)	163, 205, 499, 787
ApeKI	GCWGC	6 cut(s)	5, 311, 314, 737, 757, 1040
ApoI	RAATTY	5 cut(s)	106, 417, 437, 578, 677
Asp700I	GAANNNNTTC	2 cut(s)	546, 1081
AspS9I	GGNCC	3 cut(s)	644, 908, 1123
AsuHPI	GGTGA	3 cut(s)	110, 763, 1063
AsuII	TTCGAA	2 cut(s)	582, 873
AvaII	GGWCC	3 cut(s)	644, 908, 1123
BalI	TGGCCA	2 cut(s)	165, 501
BanII	GRGCYC	2 cut(s)	359, 971
BbsI	GAAGAC	1 cut(s)	79
Bbv12I	GWGCWC	2 cut(s)	727, 971
BbvI	GCAGC	5 cut(s)	298, 301, 724, 769, 1027
BccI	CCATC	4 cut(s)	41, 193, 197, 1013
BceAI	ACGGC	1 cut(s)	192
BciT130I	CCWGG	1 cut(s)	406
BciVI	GTATCC	2 cut(s)	87, 624
BclI	TGATCA	2 cut(s)	607, 706
BcoDI	GTCTC	5 cut(s)	137, 215, 385, 592, 1060
BfaI	CTAG	2 cut(s)	422, 618
BfmI	CTRYAG	2 cut(s)	315, 755
BfuAI	ACCTGC	3 cut(s)	23, 252, 762
BfuI	GTATCC	2 cut(s)	87, 624
BisI	GCNGC	6 cut(s)	6, 312, 315, 738, 758, 1041
BlsI	GCNGC	6 cut(s)	7, 313, 316, 739, 759, 1042
Bme1390I	CCNGG	1 cut(s)	406
Bme18I	GGWCC	3 cut(s)	644, 908, 1123
BmgT120I	GGNCC	3 cut(s)	644, 908, 1123
BmrFI	CCNGG	1 cut(s)	406
BmsI	GCATC	3 cut(s)	223, 644, 790
BpiI	GAAGAC	1 cut(s)	79
Bpu14I	TTCGAA	2 cut(s)	582, 873
BpuEI	CTTGAG	1 cut(s)	1112
BsaI	GGTCTC	1 cut(s)	137
BsaJI	CCNNGG	1 cut(s)	405
BsaWI	WCCGGW	2 cut(s)	116, 1073
Bsc4I	CCNNNNNNNGG	1 cut(s)	161
Bse118I	RCCGGY	1 cut(s)	134
Bse3DI	GCAATG	3 cut(s)	243, 510, 846
BseBI	CCWGG	1 cut(s)	406
BseDI	CCNNGG	1 cut(s)	405
BseGI	GGATG	4 cut(s)	238, 659, 719, 1024
BseLI	CCNNNNNNNGG	1 cut(s)	161
BseMI	GCAATG	3 cut(s)	243, 510, 846
BseMII	CTCAG	3 cut(s)	398, 677, 1026
BseXI	GCAGC	5 cut(s)	298, 301, 724, 769, 1027
BsgI	GTGCAG	1 cut(s)	1009
BshFI	GGCC	4 cut(s)	165, 207, 501, 789
BsiHKAI	GWGCWC	2 cut(s)	727, 971
BsiSI	CCGG	3 cut(s)	117, 135, 1074
BslI	CCNNNNNNNGG	1 cut(s)	161
BsmAI	GTCTC	5 cut(s)	137, 215, 385, 592, 1060
BsmBI	CGTCTC	1 cut(s)	215
BsmI	GAATGC	1 cut(s)	18
BsnI	GGCC	4 cut(s)	165, 207, 501, 789
Bso31I	GGTCTC	1 cut(s)	137
Bsp119I	TTCGAA	2 cut(s)	582, 873
Bsp1286I	GDGCHC	3 cut(s)	359, 727, 971
Bsp143I	GATC	3 cut(s)	607, 706, 1087
BspACI	CCGC	1 cut(s)	132
BspANI	GGCC	4 cut(s)	165, 207, 501, 789
BspCNI	CTCAG	3 cut(s)	397, 676, 1027
BspMAI	CTGCAG	2 cut(s)	319, 759
BspMI	ACCTGC	3 cut(s)	23, 252, 762
BspPI	GGATC	1 cut(s)	1082
BspT104I	TTCGAA	2 cut(s)	582, 873
BspTNI	GGTCTC	1 cut(s)	137
BsrDI	GCAATG	3 cut(s)	243, 510, 846
BsrFI	RCCGGY	1 cut(s)	134
BssAI	RCCGGY	1 cut(s)	134
BssECI	CCNNGG	1 cut(s)	405
BssMI	GATC	3 cut(s)	607, 706, 1087
Bst2UI	CCWGG	1 cut(s)	406
Bst4CI	ACNGT	3 cut(s)	85, 200, 929
BstBI	TTCGAA	2 cut(s)	582, 873
BstC8I	GCNNGC	2 cut(s)	136, 892
BstDEI	CTNAG	6 cut(s)	265, 384, 392, 531, 663, 1035
BstF5I	GGATG	4 cut(s)	238, 659, 719, 1024
BstKTI	GATC	3 cut(s)	610, 709, 1090
BstMAI	GTCTC	5 cut(s)	137, 215, 385, 592, 1060
BstMBI	GATC	3 cut(s)	607, 706, 1087
BstNI	CCWGG	1 cut(s)	406
BstSCI	CCNGG	1 cut(s)	404
BstSFI	CTRYAG	2 cut(s)	315, 755
BstV1I	GCAGC	5 cut(s)	298, 301, 724, 769, 1027
BstV2I	GAAGAC	1 cut(s)	79
BsuI	GTATCC	2 cut(s)	87, 624
BsuRI	GGCC	4 cut(s)	165, 207, 501, 789
BtsCI	GGATG	4 cut(s)	238, 659, 719, 1024
BtsI	GCAGTG	1 cut(s)	997
BtsIMutI	CAGTG	2 cut(s)	997, 1032
BveI	ACCTGC	3 cut(s)	23, 252, 762
Cac8I	GCNNGC	2 cut(s)	136, 892
CaiI	CAGNNNCTG	2 cut(s)	198, 647
Cfr10I	RCCGGY	1 cut(s)	134
Cfr13I	GGNCC	3 cut(s)	644, 908, 1123
CviAII	CATG	1 cut(s)	764
DdeI	CTNAG	6 cut(s)	265, 384, 392, 531, 663, 1035
DpnI	GATC	3 cut(s)	609, 708, 1089
DpnII	GATC	3 cut(s)	607, 706, 1087
EaeI	YGGCCR	3 cut(s)	163, 205, 499
EciI	GGCGGA	1 cut(s)	121
Ecl136II	GAGCTC	1 cut(s)	969
Eco24I	GRGCYC	2 cut(s)	359, 971
Eco31I	GGTCTC	1 cut(s)	137
Eco32I	GATATC	1 cut(s)	823
Eco47I	GGWCC	3 cut(s)	644, 908, 1123
Eco53kI	GAGCTC	1 cut(s)	969
EcoICRI	GAGCTC	1 cut(s)	969
EcoO109I	RGGNCCY	1 cut(s)	644
EcoRI	GAATTC	1 cut(s)	578
EcoRII	CCWGG	1 cut(s)	404
EcoRV	GATATC	1 cut(s)	823
EcoT38I	GRGCYC	2 cut(s)	359, 971
Esp3I	CGTCTC	1 cut(s)	215
FaeI	CATG	1 cut(s)	767
FatI	CATG	1 cut(s)	763
FbaI	TGATCA	2 cut(s)	607, 706
FblI	GTMKAC	1 cut(s)	323
Fnu4HI	GCNGC	6 cut(s)	6, 312, 315, 738, 758, 1041
FokI	GGATG	4 cut(s)	245, 666, 726, 1031
FriOI	GRGCYC	2 cut(s)	359, 971
Fsp4HI	GCNGC	6 cut(s)	6, 312, 315, 738, 758, 1041
FspBI	CTAG	2 cut(s)	422, 618
GluI	GCNGC	6 cut(s)	6, 312, 315, 738, 758, 1041
HaeIII	GGCC	4 cut(s)	165, 207, 501, 789
HapII	CCGG	3 cut(s)	117, 135, 1074
Hin1II	CATG	1 cut(s)	767
HindIII	AAGCTT	1 cut(s)	698
HinfI	GANTC	7 cut(s)	101, 269, 396, 547, 661, 870, 1024
HpaII	CCGG	3 cut(s)	117, 135, 1074
HphI	GGTGA	3 cut(s)	110, 763, 1063
Hpy166II	GTNNAC	2 cut(s)	324, 911
Hpy188I	TCNGA	7 cut(s)	112, 666, 683, 933, 1087, 1102, 1136
Hpy188III	TCNNGA	3 cut(s)	413, 958, 1121
Hpy8I	GTNNAC	2 cut(s)	324, 911
Hpy99I	CGWCG	1 cut(s)	221
HpyAV	CCTTC	3 cut(s)	469, 946, 1127
HpyCH4III	ACNGT	3 cut(s)	85, 200, 929
HpyCH4V	TGCA	9 cut(s)	18, 236, 317, 757, 784, 803, 851, 990, 1043
HpyF3I	CTNAG	6 cut(s)	265, 384, 392, 531, 663, 1035
Hsp92II	CATG	1 cut(s)	767
KroI	GCCGGC	1 cut(s)	134
KroNI	GCCGGC	1 cut(s)	136
Ksp22I	TGATCA	2 cut(s)	607, 706
Kzo9I	GATC	3 cut(s)	607, 706, 1087
LmnI	GCTCC	1 cut(s)	966
Lsp1109I	GCAGC	5 cut(s)	298, 301, 724, 769, 1027
LweI	GCATC	3 cut(s)	223, 644, 790
MaeI	CTAG	2 cut(s)	422, 618
MaeIII	GTNAC	4 cut(s)	98, 302, 808, 973
MalI	GATC	3 cut(s)	609, 708, 1089
MboI	GATC	3 cut(s)	607, 706, 1087
MboII	GAAGA	6 cut(s)	28, 31, 79, 443, 473, 817
MhlI	GDGCHC	3 cut(s)	359, 727, 971
MlsI	TGGCCA	2 cut(s)	165, 501
MluCI	AATT	8 cut(s)	58, 106, 417, 437, 558, 567, 578, 677
MluNI	TGGCCA	2 cut(s)	165, 501
MlyI	GAGTC	2 cut(s)	95, 655
MmeI	TCCRAC	5 cut(s)	104, 135, 256, 368, 587
MnlI	CCTC	8 cut(s)	60, 165, 290, 703, 854, 899, 1030, 1136
Mox20I	TGGCCA	2 cut(s)	165, 501
MroNI	GCCGGC	1 cut(s)	134
MroXI	GAANNNNTTC	2 cut(s)	546, 1081
MscI	TGGCCA	2 cut(s)	165, 501
MseI	TTAA	1 cut(s)	750
Msp20I	TGGCCA	2 cut(s)	165, 501
MspI	CCGG	3 cut(s)	117, 135, 1074
MspR9I	CCNGG	1 cut(s)	406
Mva1269I	GAATGC	1 cut(s)	18
MvaI	CCWGG	1 cut(s)	406
NaeI	GCCGGC	1 cut(s)	136
NdeII	GATC	3 cut(s)	607, 706, 1087
NgoMIV	GCCGGC	1 cut(s)	134
NlaIII	CATG	1 cut(s)	767
NmeAIII	GCCGAG	1 cut(s)	309
NmuCI	GTSAC	3 cut(s)	98, 808, 973
NspV	TTCGAA	2 cut(s)	582, 873
PctI	GAATGC	1 cut(s)	18
PdiI	GCCGGC	1 cut(s)	136
PdmI	GAANNNNTTC	2 cut(s)	546, 1081
PfeI	GAWTC	5 cut(s)	269, 396, 547, 870, 1024
PkrI	GCNGC	6 cut(s)	7, 313, 316, 739, 759, 1042
PleI	GAGTC	2 cut(s)	95, 655
PpsI	GAGTC	2 cut(s)	95, 655
PpuMI	RGGWCCY	1 cut(s)	644
Psp124BI	GAGCTC	1 cut(s)	971
Psp5II	RGGWCCY	1 cut(s)	644
Psp6I	CCWGG	1 cut(s)	404
PspGI	CCWGG	1 cut(s)	404
PspPI	GGNCC	3 cut(s)	644, 908, 1123
PspPPI	RGGWCCY	1 cut(s)	644
PstI	CTGCAG	2 cut(s)	319, 759
PstNI	CAGNNNCTG	2 cut(s)	198, 647
SacI	GAGCTC	1 cut(s)	971
SaqAI	TTAA	1 cut(s)	750
SatI	GCNGC	6 cut(s)	6, 312, 315, 738, 758, 1041
Sau3AI	GATC	3 cut(s)	607, 706, 1087
Sau96I	GGNCC	3 cut(s)	644, 908, 1123
SchI	GAGTC	2 cut(s)	95, 655
ScrFI	CCNGG	1 cut(s)	406
SduI	GDGCHC	3 cut(s)	359, 727, 971
SfaNI	GCATC	3 cut(s)	223, 644, 790
SfcI	CTRYAG	2 cut(s)	315, 755
SfuI	TTCGAA	2 cut(s)	582, 873
SinI	GGWCC	3 cut(s)	644, 908, 1123
SmlI	CTYRAG	1 cut(s)	1127
SmoI	CTYRAG	1 cut(s)	1127
Sse9I	AATT	8 cut(s)	58, 106, 417, 437, 558, 567, 578, 677
SsiI	CCGC	1 cut(s)	132
SspMI	CTAG	2 cut(s)	422, 618
SstI	GAGCTC	1 cut(s)	971
StyD4I	CCNGG	1 cut(s)	404
TaaI	ACNGT	3 cut(s)	85, 200, 929
TaqI	TCGA	3 cut(s)	219, 582, 873
TasI	AATT	8 cut(s)	58, 106, 417, 437, 558, 567, 578, 677
TfiI	GAWTC	5 cut(s)	269, 396, 547, 870, 1024
Tru1I	TTAA	1 cut(s)	750
Tru9I	TTAA	1 cut(s)	750
TscAI	CASTG	2 cut(s)	997, 1039
TseFI	GTSAC	3 cut(s)	98, 808, 973
TseI	GCWGC	6 cut(s)	5, 311, 314, 737, 757, 1040
Tsp45I	GTSAC	3 cut(s)	98, 808, 973
TspDTI	ATGAA	4 cut(s)	254, 354, 752, 1016
TspRI	CASTG	2 cut(s)	997, 1039
VpaK11BI	GGWCC	3 cut(s)	644, 908, 1123
XapI	RAATTY	5 cut(s)	106, 417, 437, 578, 677
XmiI	GTMKAC	1 cut(s)	323
XmnI	GAANNNNTTC	2 cut(s)	546, 1081
XspI	CTAG	2 cut(s)	422, 618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.