Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002437

Physical Location & Seq

Genomic Coordinates Forward (+)

28845250 .. 28849551

Gene Structure 4302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G330300.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGCTACCAAGAATTCCGTTCTCCAAATAATTGTCACCTTACTTGCGATTTTTTTACCTGTCGGAAAGTCAATTAAATTCAACTATCCTGCAGTTTTCAACTTTGGTGATTCAAACTCAGACACAGGTGAGATGACTGCTGGGCGTGGCTGGCAACTTCCACTGCCTTATGGACAAACCTACTTCAAACCTCCATCATCATCTGGGAGGTTTTCTGATGGTCGTCTGCTCATAGATTTTCTCATGAATGCAATGGAGCTTCCATTTCTAAATGCCTATTTGGATTCAGTTGGCTTGCCAAGTTTCAAAAAAGGGTGCAATTTTGCCGCTGCTGGGTCAACTATACTTCCAGCAACTGCAACATCCATCTGCCCATTTTCATTTGGGATCCAGGTCAATCAGTTTCTTAGATTCAAAGCCAGGGTTCTTGAATTGCTAGCTAAAGGTAAGAACTTTAGCAAGTATCTGCCTACAGAAGATTTCTTTTCGAAGGGGCTTTACATGTTCGATATAGGCCAAAATGATCTTGCTGGTGCATTTTACTCTAAAACATTGGATCAGATTCTTGCTTCAATTCCAACAATTTTGGCAGAATTTGAAACAGGAATAAAGAAACTATATGATCAAGGGGGTAGGAACTTTTGGATACACAACACAGCACCTCTCGGATGCTTGACTCAGAATGTTGCCAAGTTTGGAACTAATCCATCAAGGCTTGATGAACGAGGATGTGTCAGCTCCCACAACGAAGCTGCAAAACTTTTCAACCTGCAGCTTCATGCCCTCACTAAAAAGTTGCAAGGCCAATACACCGATGCAAATGTCGTATATGTTGATATCTTTTCAATAAAATATGAACTCATTTCAAATTATTCCCGATATGGATTTGAACAAGCTATTATGGCTTGCTGTGGGTATGGAGGTCCGCCGTTGAACTATGACAGTCAGATTACCTGTGGACAAACAAAGACCTTGAATGGAACCTCTGTCACAGCCAAAGGATGCAGTGATAGTACTGACTATGTTAGTTGGGATGGAATTCATTACACAGAGGCTGCAAATCAGTTTGTCTCATCAAAGATACTCACCGGAAAATATTCTGATCCGCCTTTCTCAGACAAAATGCCTTTCCTTCTGAAGCTCAAGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 ko04728 map04144 map04728

Pfam Domains

Protein Families

Kinesin Lipase_GDSL

Protein Analysis

384

Amino Acids

42.23

Weight (kDa)

8.61

Isoelectric Point (pI)

29.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54790 AT1G54790 AT1G54790
fragaria_vesca	FvH4_6g05321 FvH4_6g05321 FvH4_6g05321 FvH4_6g05330 FvH4_6g05330 FvH4_6g05330 FvH4_6g05330
malus_domestica	MD04G1209200.v1.1 MD04G1209300.v1.1 MD12G1223900.v1.1
prunus_persica	Prupe.6G330300_v2.0.a1 Prupe.6G330300_v2.0.a1 Prupe.6G330300_v2.0.a1 Prupe.6G330300_v2.0.a1
pyrus_communis	pycom04g18540 pycom04g18550 pycom12g20930 pycom12g20950
rosa_chinensis	RchiOBHm_Chr3g0454071 RchiOBHm_Chr3g0454091
rosa_laevigata	RLG00000025484
rosa_multiflora	Rmu_sc0020696.1_g000003 Rmu_sc0020696.1_g000004 Rmu_sc0026189.1_g000003 Rmu_sc0026189.1_g000004 Rmu_sc0040155.1_g000002
rosa_roxburghii	Rroxscaffold_6G00430880
rosa_rugosa	Rorug02G0652900
rosa_samantha	Rh3AG055700 Rh3AG055800 Rh3BG057100 Rh3BG057200 Rh3CG056400 Rh3CG056500 Rh3DG057700 Rh3DG057800
rosa_wichuraiana	Rw3G004270 Rw3G004280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	777
AciI	CCGC	3 cut(s)	327, 926, 1106
AclWI	GGATC	4 cut(s)	382, 395, 564, 1097
AcsI	RAATTY	4 cut(s)	13, 77, 593, 1038
AfaI	GTAC	1 cut(s)	1015
AfiI	CCNNNNNNNGG	1 cut(s)	333
AflIII	ACRYGT	1 cut(s)	501
AjnI	CCWGG	2 cut(s)	390, 419
AluBI	AGCT	7 cut(s)	259, 440, 738, 752, 775, 896, 1141
AluI	AGCT	7 cut(s)	259, 440, 738, 752, 775, 896, 1141
Alw26I	GTCTC	1 cut(s)	1075
AlwI	GGATC	4 cut(s)	382, 395, 564, 1097
AlwNI	CAGNNNCTG	2 cut(s)	356, 1055
AoxI	GGCC	2 cut(s)	514, 802
ApeKI	GCWGC	4 cut(s)	329, 752, 772, 1055
ApoI	RAATTY	4 cut(s)	13, 77, 593, 1038
Asp700I	GAANNNNTTC	1 cut(s)	1096
AspS9I	GGNCC	1 cut(s)	923
AsuHPI	GGTGA	4 cut(s)	28, 119, 140, 1078
AsuII	TTCGAA	1 cut(s)	488
AsuNHI	GCTAGC	1 cut(s)	436
AvaII	GGWCC	1 cut(s)	923
BamHI	GGATCC	1 cut(s)	387
BarI	GAAGNNNNNNTAC	2 cut(s)	482, 514
BbvI	GCAGC	4 cut(s)	316, 739, 784, 1042
BccI	CCATC	5 cut(s)	202, 212, 374, 715, 1028
BceAI	ACGGC	1 cut(s)	913
BciT130I	CCWGG	2 cut(s)	392, 421
BciVI	GTATCC	1 cut(s)	639
BclI	TGATCA	1 cut(s)	622
BcoDI	GTCTC	1 cut(s)	1075
BfaI	CTAG	1 cut(s)	437
BfmI	CTRYAG	3 cut(s)	90, 471, 770
BfuAI	ACCTGC	1 cut(s)	777
BfuI	GTATCC	1 cut(s)	639
BisI	GCNGC	5 cut(s)	327, 330, 753, 773, 1056
BlsI	GCNGC	5 cut(s)	328, 331, 754, 774, 1057
BmcAI	AGTACT	1 cut(s)	1015
Bme1390I	CCNGG	2 cut(s)	392, 421
Bme18I	GGWCC	1 cut(s)	923
BmgT120I	GGNCC	1 cut(s)	923
BmiI	GGNNCC	2 cut(s)	389, 982
BmrFI	CCNGG	2 cut(s)	392, 421
BmsI	GCATC	3 cut(s)	659, 805, 992
BmtI	GCTAGC	1 cut(s)	440
Bpu14I	TTCGAA	1 cut(s)	488
BpuEI	CTTGAG	1 cut(s)	1127
BsaJI	CCNNGG	1 cut(s)	420
BsaWI	WCCGGW	1 cut(s)	1088
Bsc4I	CCNNNNNNNGG	1 cut(s)	333
Bse3DI	GCAATG	1 cut(s)	258
BseBI	CCWGG	2 cut(s)	392, 421
BseDI	CCNNGG	1 cut(s)	420
BseGI	GGATG	5 cut(s)	362, 674, 734, 1007, 1039
BseLI	CCNNNNNNNGG	1 cut(s)	333
BseMI	GCAATG	1 cut(s)	258
BseMII	CTCAG	3 cut(s)	132, 692, 1128
BseXI	GCAGC	4 cut(s)	316, 739, 784, 1042
BseYI	CCCAGC	2 cut(s)	140, 332
BshFI	GGCC	2 cut(s)	516, 804
BsiSI	CCGG	1 cut(s)	1089
BslI	CCNNNNNNNGG	1 cut(s)	333
BsmAI	GTCTC	1 cut(s)	1075
BsmI	GAATGC	1 cut(s)	253
BsnI	GGCC	2 cut(s)	516, 804
Bsp119I	TTCGAA	1 cut(s)	488
Bsp143I	GATC	5 cut(s)	387, 523, 556, 622, 1102
BspACI	CCGC	3 cut(s)	327, 926, 1106
BspANI	GGCC	2 cut(s)	516, 804
BspCNI	CTCAG	3 cut(s)	131, 691, 1127
BspHI	TCATGA	1 cut(s)	243
BspLI	GGNNCC	2 cut(s)	389, 982
BspMAI	CTGCAG	2 cut(s)	94, 774
BspMI	ACCTGC	1 cut(s)	777
BspOI	GCTAGC	1 cut(s)	440
BspPI	GGATC	4 cut(s)	382, 395, 564, 1097
BspT104I	TTCGAA	1 cut(s)	488
BsrDI	GCAATG	1 cut(s)	258
BssECI	CCNNGG	1 cut(s)	420
BssMI	GATC	5 cut(s)	387, 523, 556, 622, 1102
Bst2UI	CCWGG	2 cut(s)	392, 421
Bst4CI	ACNGT	1 cut(s)	944
BstBI	TTCGAA	1 cut(s)	488
BstC8I	GCNNGC	4 cut(s)	152, 296, 438, 907
BstDEI	CTNAG	4 cut(s)	118, 407, 678, 1114
BstF5I	GGATG	5 cut(s)	362, 674, 734, 1007, 1039
BstKTI	GATC	5 cut(s)	390, 526, 559, 625, 1105
BstMAI	GTCTC	1 cut(s)	1075
BstMBI	GATC	5 cut(s)	387, 523, 556, 622, 1102
BstMWI	GCNNNNNNNGC	2 cut(s)	151, 902
BstNI	CCWGG	2 cut(s)	392, 421
BstNSI	RCATGY	1 cut(s)	505
BstSCI	CCNGG	2 cut(s)	390, 419
BstSFI	CTRYAG	3 cut(s)	90, 471, 770
BstV1I	GCAGC	4 cut(s)	316, 739, 784, 1042
BstX2I	RGATCY	1 cut(s)	387
BstYI	RGATCY	1 cut(s)	387
BsuI	GTATCC	1 cut(s)	639
BsuRI	GGCC	2 cut(s)	516, 804
BtsCI	GGATG	5 cut(s)	362, 674, 734, 1007, 1039
BtsI	GCAGTG	2 cut(s)	161, 1012
BtsIMutI	CAGTG	2 cut(s)	161, 1012
BveI	ACCTGC	1 cut(s)	777
Cac8I	GCNNGC	4 cut(s)	152, 296, 438, 907
CaiI	CAGNNNCTG	2 cut(s)	356, 1055
CciI	TCATGA	1 cut(s)	243
Cfr13I	GGNCC	1 cut(s)	923
Csp6I	GTAC	1 cut(s)	1014
CviAII	CATG	3 cut(s)	244, 502, 779
CviQI	GTAC	1 cut(s)	1014
DdeI	CTNAG	4 cut(s)	118, 407, 678, 1114
DpnI	GATC	5 cut(s)	389, 525, 558, 624, 1104
DpnII	GATC	5 cut(s)	387, 523, 556, 622, 1102
EciI	GGCGGA	2 cut(s)	915, 1095
Eco32I	GATATC	1 cut(s)	838
Eco47I	GGWCC	1 cut(s)	923
EcoRI	GAATTC	2 cut(s)	13, 1038
EcoRII	CCWGG	2 cut(s)	390, 419
EcoRV	GATATC	1 cut(s)	838
FaeI	CATG	3 cut(s)	247, 505, 782
FatI	CATG	3 cut(s)	243, 501, 778
FbaI	TGATCA	1 cut(s)	622
Fnu4HI	GCNGC	5 cut(s)	327, 330, 753, 773, 1056
FokI	GGATG	5 cut(s)	349, 681, 741, 1014, 1046
Fsp4HI	GCNGC	5 cut(s)	327, 330, 753, 773, 1056
FspBI	CTAG	1 cut(s)	437
GluI	GCNGC	5 cut(s)	327, 330, 753, 773, 1056
GsaI	CCCAGC	2 cut(s)	144, 336
HaeIII	GGCC	2 cut(s)	516, 804
HapII	CCGG	1 cut(s)	1089
Hin1II	CATG	3 cut(s)	247, 505, 782
HincII	GTYRAC	1 cut(s)	339
HindII	GTYRAC	1 cut(s)	339
HinfI	GANTC	5 cut(s)	110, 284, 411, 562, 676
HpaII	CCGG	1 cut(s)	1089
HphI	GGTGA	4 cut(s)	28, 119, 140, 1078
Hpy166II	GTNNAC	2 cut(s)	339, 959
Hpy188III	TCNNGA	3 cut(s)	244, 428, 876
Hpy8I	GTNNAC	2 cut(s)	339, 959
HpyAV	CCTTC	2 cut(s)	484, 1142
HpyCH4III	ACNGT	1 cut(s)	944
HpyF10VI	GCNNNNNNNGC	2 cut(s)	151, 902
HpyF3I	CTNAG	4 cut(s)	118, 407, 678, 1114
Hsp92II	CATG	3 cut(s)	247, 505, 782
Ksp22I	TGATCA	1 cut(s)	622
Kzo9I	GATC	5 cut(s)	387, 523, 556, 622, 1102
LmnI	GCTCC	2 cut(s)	256, 743
Lsp1109I	GCAGC	4 cut(s)	316, 739, 784, 1042
LweI	GCATC	3 cut(s)	659, 805, 992
MaeI	CTAG	1 cut(s)	437
MaeIII	GTNAC	2 cut(s)	34, 988
MalI	GATC	5 cut(s)	389, 525, 558, 624, 1104
MboI	GATC	5 cut(s)	387, 523, 556, 622, 1102
MboII	GAAGA	1 cut(s)	488
MflI	RGATCY	1 cut(s)	387
MlyI	GAGTC	1 cut(s)	670
MmeI	TCCRAC	2 cut(s)	43, 602
MnlI	CCTC	8 cut(s)	201, 201, 672, 719, 794, 914, 994, 1045
MroXI	GAANNNNTTC	1 cut(s)	1096
MseI	TTAA	1 cut(s)	75
MspA1I	CMGCKG	1 cut(s)	329
MspI	CCGG	1 cut(s)	1089
MspR9I	CCNGG	2 cut(s)	392, 421
Mva1269I	GAATGC	1 cut(s)	253
MvaI	CCWGG	2 cut(s)	392, 421
MwoI	GCNNNNNNNGC	2 cut(s)	151, 902
NdeII	GATC	5 cut(s)	387, 523, 556, 622, 1102
NheI	GCTAGC	1 cut(s)	436
NlaIII	CATG	3 cut(s)	247, 505, 782
NlaIV	GGNNCC	2 cut(s)	389, 982
NmuCI	GTSAC	2 cut(s)	34, 988
NspI	RCATGY	1 cut(s)	505
NspV	TTCGAA	1 cut(s)	488
PagI	TCATGA	1 cut(s)	243
PciI	ACATGT	1 cut(s)	501
PctI	GAATGC	1 cut(s)	253
PdmI	GAANNNNTTC	1 cut(s)	1096
PfeI	GAWTC	4 cut(s)	110, 284, 411, 562
PkrI	GCNGC	5 cut(s)	328, 331, 754, 774, 1057
PleI	GAGTC	1 cut(s)	670
PpsI	GAGTC	1 cut(s)	670
PscI	ACATGT	1 cut(s)	501
Psp6I	CCWGG	2 cut(s)	390, 419
PspFI	CCCAGC	2 cut(s)	140, 332
PspGI	CCWGG	2 cut(s)	390, 419
PspN4I	GGNNCC	2 cut(s)	389, 982
PspPI	GGNCC	1 cut(s)	923
PstI	CTGCAG	2 cut(s)	94, 774
PstNI	CAGNNNCTG	2 cut(s)	356, 1055
PsuI	RGATCY	1 cut(s)	387
RsaI	GTAC	1 cut(s)	1015
RsaNI	GTAC	1 cut(s)	1014
SaqAI	TTAA	1 cut(s)	75
SatI	GCNGC	5 cut(s)	327, 330, 753, 773, 1056
Sau3AI	GATC	5 cut(s)	387, 523, 556, 622, 1102
Sau96I	GGNCC	1 cut(s)	923
ScaI	AGTACT	1 cut(s)	1015
SchI	GAGTC	1 cut(s)	670
ScrFI	CCNGG	2 cut(s)	392, 421
SfaNI	GCATC	3 cut(s)	659, 805, 992
SfcI	CTRYAG	3 cut(s)	90, 471, 770
SfuI	TTCGAA	1 cut(s)	488
SinI	GGWCC	1 cut(s)	923
SmlI	CTYRAG	1 cut(s)	1142
SmoI	CTYRAG	1 cut(s)	1142
SsiI	CCGC	3 cut(s)	327, 926, 1106
SspI	AATATT	1 cut(s)	1097
SspMI	CTAG	1 cut(s)	437
StyD4I	CCNGG	2 cut(s)	390, 419
TaaI	ACNGT	1 cut(s)	944
TaqI	TCGA	2 cut(s)	488, 507
TatI	WGTACW	1 cut(s)	1013
TauI	GCSGC	1 cut(s)	329
TfiI	GAWTC	4 cut(s)	110, 284, 411, 562
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TscAI	CASTG	2 cut(s)	168, 1012
TseFI	GTSAC	2 cut(s)	34, 988
TseI	GCWGC	4 cut(s)	329, 752, 772, 1055
Tsp45I	GTSAC	2 cut(s)	34, 988
TspDTI	ATGAA	6 cut(s)	260, 369, 735, 767, 870, 1031
TspGWI	ACGGA	1 cut(s)	7
TspRI	CASTG	2 cut(s)	168, 1012
VpaK11BI	GGWCC	1 cut(s)	923
XapI	RAATTY	4 cut(s)	13, 77, 593, 1038
XceI	RCATGY	1 cut(s)	505
XmnI	GAANNNNTTC	1 cut(s)	1096
XspI	CTAG	1 cut(s)	437
ZrmI	AGTACT	1 cut(s)	1015

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.