Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002437

Physical Location & Seq

Genomic Coordinates Reverse (-)

2994695 .. 2998291

Gene Structure 3597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g05321.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGGCTACCAAGAATCTCAAAGTTTTTCATGTTCTCACGTTATTCTGCTTTCTTCTTTTACGTTGTGCAAACTCACTGAACTATCCCGCCGTTTTCAACTTTGGTGATTCCAACTCCGACACCGGCGAGCTCACTGCCGGCATCGGTTTCCGGCTTCCTTATCCATATGGAGAGCTTTACTTCAATGCTTCGTTGTCATCCGGTGGGAGGTTTTCCGATGGCCGTCTCATCATAGATTTTCTCATGGGGGCAATGAATCTTCCATTTCTAAATCCCTATTTGGATTCAGCTGGCCTCCCAAGTTTCCGAAATGGGTGCAATTTTGCTGCTGGAGGGGCTACTACACATCCAGCAACTGCAACATCTGTCTGCCCCTTTTCATTTGGGGTTCAGGTATCTCAGTTTTTGCGATTCAAGGCTCGTGCTCTTCAATTGCTAGCTGCTAAAGGTAAGGATTTTGAGAATTATCTACCCTCGGAAGATTCCTTTCAGAAGGGGCTGTATGTGTTTGACATAGGCCAAAATGATCTTGCTGGTGCATTTTATTCTAAAACACTGGATCAGATTCTTGCTTTTATTCCAACTATTTTGGCACAGTTCCAGTTAGGAATACAGAAATTATATGATCAAGGTGCTAGGAACTTTTGGATACACAACACAGGTCCTCTAGGGTGCTTGACTCAGAATGTAGCCAAATTTGGAACGAACACATCAGAGCTTGATGAGCACGGATGTGTTAGCGCACACAACCAAGCAGCTAAAACTTTCAACCTGCAGCTTCATGATCTCAGTAAAAAGTTGCAAGGCCAATATTCTGATGCAAATGTCACATATGTTGATATCTTCTCTATAAAATATGACCTCATTGCAAATTATTCTCAATATGGGTTTCAACAACCTATTATGGCTTGCTGTGGGTATGGAGGTCCGCCTTTGAACTACAACAGTCGGGTTTCTTGTGGATCAACAAGGATCTTGAATGGCACATTGGTCACATCCAAAGGGTGTAGCAATAGTTCTGTGTATGTTAATTGGGATGGAATTCATTACACACAGGCTGCAAATCAGTTTGTATCATCAAAGATCCTCACGGGAAAGTATTCTGATCCTCCATTGTCAGACAACATTTTCTTTTCTCTGAAGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00901 ko01110 map00901 map01110

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

383

Amino Acids

41.88

Weight (kDa)

7.96

Isoelectric Point (pI)

26.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	31 - 361	2e-45	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54790 AT1G54790 AT1G54790
fragaria_vesca	FvH4_6g05321 FvH4_6g05321 FvH4_6g05321 FvH4_6g05330 FvH4_6g05330 FvH4_6g05330 FvH4_6g05330
malus_domestica	MD04G1209200.v1.1 MD04G1209300.v1.1 MD12G1223900.v1.1
prunus_persica	Prupe.6G330300_v2.0.a1 Prupe.6G330300_v2.0.a1 Prupe.6G330300_v2.0.a1 Prupe.6G330300_v2.0.a1
pyrus_communis	pycom04g18540 pycom04g18550 pycom12g20930 pycom12g20950
rosa_chinensis	RchiOBHm_Chr3g0454071 RchiOBHm_Chr3g0454091
rosa_laevigata	RLG00000025484
rosa_multiflora	Rmu_sc0020696.1_g000003 Rmu_sc0020696.1_g000004 Rmu_sc0026189.1_g000003 Rmu_sc0026189.1_g000004 Rmu_sc0040155.1_g000002
rosa_roxburghii	Rroxscaffold_6G00430880
rosa_rugosa	Rorug02G0652900
rosa_samantha	Rh3AG055700 Rh3AG055800 Rh3BG057100 Rh3BG057200 Rh3CG056400 Rh3CG056500 Rh3DG057700 Rh3DG057800
rosa_wichuraiana	Rw3G004270 Rw3G004280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	780
AciI	CCGC	2 cut(s)	87, 929
AclWI	GGATC	5 cut(s)	567, 970, 980, 1078, 1100
AcoI	YGGCCR	1 cut(s)	220
AcsI	RAATTY	2 cut(s)	695, 1041
AfiI	CCNNNNNNNGG	1 cut(s)	207
AgsI	TTSAA	8 cut(s)	97, 184, 415, 431, 769, 893, 937, 979
AjuI	GAANNNNNNNTTGG	2 cut(s)	971, 1003
AleI	CACNNNNGTG	1 cut(s)	732
AluBI	AGCT	7 cut(s)	130, 175, 290, 440, 718, 758, 778
AluI	AGCT	7 cut(s)	130, 175, 290, 440, 718, 758, 778
Alw21I	GWGCWC	3 cut(s)	132, 427, 729
Alw26I	GTCTC	1 cut(s)	230
AlwI	GGATC	5 cut(s)	567, 970, 980, 1078, 1100
AlwNI	CAGNNNCTG	1 cut(s)	356
AoxI	GGCC	4 cut(s)	220, 292, 517, 805
ApeKI	GCWGC	5 cut(s)	326, 440, 755, 775, 1058
ApoI	RAATTY	2 cut(s)	695, 1041
Asp700I	GAANNNNTTC	1 cut(s)	1099
AspLEI	GCGC	1 cut(s)	743
AspS9I	GGNCC	2 cut(s)	662, 926
AsuHPI	GGTGA	1 cut(s)	116
AsuNHI	GCTAGC	1 cut(s)	436
AvaII	GGWCC	2 cut(s)	662, 926
BanII	GRGCYC	1 cut(s)	132
BauI	CACGAG	1 cut(s)	420
Bbv12I	GWGCWC	3 cut(s)	132, 427, 729
BbvI	GCAGC	5 cut(s)	313, 427, 767, 787, 1045
BccI	CCATC	2 cut(s)	212, 1031
BceAI	ACGGC	2 cut(s)	74, 207
BcgI	CGANNNNNNTGC	4 cut(s)	116, 150, 297, 331
BciVI	GTATCC	1 cut(s)	642
BclI	TGATCA	1 cut(s)	625
BcoDI	GTCTC	1 cut(s)	230
BfaI	CTAG	3 cut(s)	437, 636, 668
BfmI	CTRYAG	1 cut(s)	773
BfuAI	ACCTGC	1 cut(s)	780
BfuI	GTATCC	1 cut(s)	642
BisI	GCNGC	5 cut(s)	327, 441, 756, 776, 1059
BlsI	GCNGC	5 cut(s)	328, 442, 757, 777, 1060
Bme18I	GGWCC	2 cut(s)	662, 926
BmgT120I	GGNCC	2 cut(s)	662, 926
BmsI	GCATC	2 cut(s)	150, 808
BmtI	GCTAGC	1 cut(s)	440
BpmI	CTGGAG	1 cut(s)	351
BsaJI	CCNNGG	1 cut(s)	474
BsaWI	WCCGGW	1 cut(s)	200
Bsc4I	CCNNNNNNNGG	1 cut(s)	207
Bse118I	RCCGGY	2 cut(s)	122, 137
Bse1I	ACTGG	2 cut(s)	561, 601
Bse3DI	GCAATG	2 cut(s)	258, 864
BseDI	CCNNGG	1 cut(s)	474
BseGI	GGATG	5 cut(s)	197, 346, 737, 995, 1042
BseLI	CCNNNNNNNGG	1 cut(s)	207
BseMI	GCAATG	2 cut(s)	258, 864
BseMII	CTCAG	3 cut(s)	413, 695, 802
BseNI	ACTGG	2 cut(s)	561, 601
BseXI	GCAGC	5 cut(s)	313, 427, 767, 787, 1045
BshFI	GGCC	4 cut(s)	222, 294, 519, 807
BsiHKAI	GWGCWC	3 cut(s)	132, 427, 729
BsiSI	CCGG	4 cut(s)	123, 138, 151, 201
BslI	CCNNNNNNNGG	1 cut(s)	207
BsmAI	GTCTC	1 cut(s)	230
BsmBI	CGTCTC	1 cut(s)	230
BsnI	GGCC	4 cut(s)	222, 294, 519, 807
Bsp1286I	GDGCHC	3 cut(s)	132, 427, 729
Bsp143I	GATC	8 cut(s)	526, 559, 625, 784, 962, 972, 1083, 1105
BspACI	CCGC	2 cut(s)	87, 929
BspANI	GGCC	4 cut(s)	222, 294, 519, 807
BspCNI	CTCAG	3 cut(s)	412, 694, 801
BspHI	TCATGA	1 cut(s)	781
BspMAI	CTGCAG	1 cut(s)	777
BspMI	ACCTGC	1 cut(s)	780
BspOI	GCTAGC	1 cut(s)	440
BspPI	GGATC	5 cut(s)	567, 970, 980, 1078, 1100
BspQI	GCTCTTC	1 cut(s)	432
BsrDI	GCAATG	2 cut(s)	258, 864
BsrFI	RCCGGY	2 cut(s)	122, 137
BsrI	ACTGG	2 cut(s)	561, 601
BssAI	RCCGGY	2 cut(s)	122, 137
BssECI	CCNNGG	1 cut(s)	474
BssMI	GATC	8 cut(s)	526, 559, 625, 784, 962, 972, 1083, 1105
BssSI	CACGAG	1 cut(s)	420
Bst2BI	CACGAG	1 cut(s)	420
Bst4CI	ACNGT	2 cut(s)	597, 947
Bst6I	CTCTTC	1 cut(s)	432
BstC8I	GCNNGC	5 cut(s)	128, 139, 292, 438, 910
BstDEI	CTNAG	3 cut(s)	399, 681, 788
BstF5I	GGATG	5 cut(s)	197, 346, 737, 995, 1042
BstHHI	GCGC	1 cut(s)	743
BstKTI	GATC	8 cut(s)	529, 562, 628, 787, 965, 975, 1086, 1108
BstMAI	GTCTC	1 cut(s)	230
BstMBI	GATC	8 cut(s)	526, 559, 625, 784, 962, 972, 1083, 1105
BstMWI	GCNNNNNNNGC	2 cut(s)	335, 724
BstSFI	CTRYAG	1 cut(s)	773
BstV1I	GCAGC	5 cut(s)	313, 427, 767, 787, 1045
BstX2I	RGATCY	2 cut(s)	972, 1083
BstYI	RGATCY	2 cut(s)	972, 1083
BsuI	GTATCC	1 cut(s)	642
BsuRI	GGCC	4 cut(s)	222, 294, 519, 807
BtsCI	GGATG	5 cut(s)	197, 346, 737, 995, 1042
BtsI	GCAGTG	1 cut(s)	132
BtsIMutI	CAGTG	3 cut(s)	74, 132, 554
BveI	ACCTGC	1 cut(s)	780
Cac8I	GCNNGC	5 cut(s)	128, 139, 292, 438, 910
CaiI	CAGNNNCTG	1 cut(s)	356
CciI	TCATGA	1 cut(s)	781
CfoI	GCGC	1 cut(s)	743
Cfr10I	RCCGGY	2 cut(s)	122, 137
Cfr13I	GGNCC	2 cut(s)	662, 926
CviAII	CATG	3 cut(s)	29, 244, 782
DdeI	CTNAG	3 cut(s)	399, 681, 788
DpnI	GATC	8 cut(s)	528, 561, 627, 786, 964, 974, 1085, 1107
DpnII	GATC	8 cut(s)	526, 559, 625, 784, 962, 972, 1083, 1105
EaeI	YGGCCR	1 cut(s)	220
Eam1104I	CTCTTC	1 cut(s)	432
EarI	CTCTTC	1 cut(s)	432
EciI	GGCGGA	1 cut(s)	918
Ecl136II	GAGCTC	1 cut(s)	130
Eco24I	GRGCYC	1 cut(s)	132
Eco32I	GATATC	1 cut(s)	841
Eco47I	GGWCC	2 cut(s)	662, 926
Eco53kI	GAGCTC	1 cut(s)	130
EcoICRI	GAGCTC	1 cut(s)	130
EcoO109I	RGGNCCY	1 cut(s)	662
EcoRI	GAATTC	1 cut(s)	1041
EcoRV	GATATC	1 cut(s)	841
EcoT38I	GRGCYC	1 cut(s)	132
Esp3I	CGTCTC	1 cut(s)	230
FaeI	CATG	3 cut(s)	32, 247, 785
FatI	CATG	3 cut(s)	28, 243, 781
FauI	CCCGC	1 cut(s)	94
FauNDI	CATATG	2 cut(s)	166, 832
FbaI	TGATCA	1 cut(s)	625
Fnu4HI	GCNGC	5 cut(s)	327, 441, 756, 776, 1059
FokI	GGATG	5 cut(s)	184, 333, 744, 982, 1049
FriOI	GRGCYC	1 cut(s)	132
Fsp4HI	GCNGC	5 cut(s)	327, 441, 756, 776, 1059
FspBI	CTAG	3 cut(s)	437, 636, 668
GlaI	GCGC	1 cut(s)	742
GluI	GCNGC	5 cut(s)	327, 441, 756, 776, 1059
GsuI	CTGGAG	1 cut(s)	351
HaeIII	GGCC	4 cut(s)	222, 294, 519, 807
HapII	CCGG	4 cut(s)	123, 138, 151, 201
HhaI	GCGC	1 cut(s)	743
Hin1II	CATG	3 cut(s)	32, 247, 785
Hin6I	GCGC	1 cut(s)	741
HinP1I	GCGC	1 cut(s)	741
HinfI	GANTC	8 cut(s)	13, 107, 256, 284, 411, 482, 565, 679
HpaII	CCGG	4 cut(s)	123, 138, 151, 201
HphI	GGTGA	1 cut(s)	116
Hpy188III	TCNNGA	2 cut(s)	782, 976
HpyAV	CCTTC	1 cut(s)	487
HpyCH4III	ACNGT	2 cut(s)	597, 947
HpyCH4IV	ACGT	2 cut(s)	38, 61
HpyCH4V	TGCA	9 cut(s)	68, 318, 359, 539, 775, 802, 821, 869, 1061
HpyF10VI	GCNNNNNNNGC	2 cut(s)	335, 724
HpyF3I	CTNAG	3 cut(s)	399, 681, 788
HpySE526I	ACGT	2 cut(s)	38, 61
Hsp92II	CATG	3 cut(s)	32, 247, 785
HspAI	GCGC	1 cut(s)	741
KroI	GCCGGC	1 cut(s)	137
KroNI	GCCGGC	1 cut(s)	139
Ksp22I	TGATCA	1 cut(s)	625
Kzo9I	GATC	8 cut(s)	526, 559, 625, 784, 962, 972, 1083, 1105
LguI	GCTCTTC	1 cut(s)	432
Lsp1109I	GCAGC	5 cut(s)	313, 427, 767, 787, 1045
LweI	GCATC	2 cut(s)	150, 808
MaeI	CTAG	3 cut(s)	437, 636, 668
MaeII	ACGT	2 cut(s)	38, 61
MaeIII	GTNAC	2 cut(s)	826, 991
MalI	GATC	8 cut(s)	528, 561, 627, 786, 964, 974, 1085, 1107
MboI	GATC	8 cut(s)	526, 559, 625, 784, 962, 972, 1083, 1105
MboII	GAAGA	5 cut(s)	44, 251, 419, 491, 835
MfeI	CAATTG	1 cut(s)	431
MflI	RGATCY	2 cut(s)	972, 1083
MhlI	GDGCHC	3 cut(s)	132, 427, 729
MluCI	AATT	8 cut(s)	319, 431, 463, 617, 695, 871, 1030, 1041
MlyI	GAGTC	1 cut(s)	673
MmeI	TCCRAC	3 cut(s)	135, 141, 605
MnlI	CCTC	9 cut(s)	201, 305, 326, 484, 675, 872, 917, 1097, 1119
MroNI	GCCGGC	1 cut(s)	137
MroXI	GAANNNNTTC	1 cut(s)	1099
MseI	TTAA	1 cut(s)	1029
MslI	CAYNNNNRTG	1 cut(s)	732
MspA1I	CMGCKG	1 cut(s)	290
MspI	CCGG	4 cut(s)	123, 138, 151, 201
MunI	CAATTG	1 cut(s)	431
MwoI	GCNNNNNNNGC	2 cut(s)	335, 724
NaeI	GCCGGC	1 cut(s)	139
NdeI	CATATG	2 cut(s)	166, 832
NdeII	GATC	8 cut(s)	526, 559, 625, 784, 962, 972, 1083, 1105
NgoMIV	GCCGGC	1 cut(s)	137
NheI	GCTAGC	1 cut(s)	436
NlaIII	CATG	3 cut(s)	32, 247, 785
NmuCI	GTSAC	2 cut(s)	826, 991
OliI	CACNNNNGTG	1 cut(s)	732
PagI	TCATGA	1 cut(s)	781
PciSI	GCTCTTC	1 cut(s)	432
PdiI	GCCGGC	1 cut(s)	139
PdmI	GAANNNNTTC	1 cut(s)	1099
PfeI	GAWTC	7 cut(s)	13, 107, 256, 284, 411, 482, 565
PkrI	GCNGC	5 cut(s)	328, 442, 757, 777, 1060
PleI	GAGTC	1 cut(s)	673
PpsI	GAGTC	1 cut(s)	673
PpuMI	RGGWCCY	1 cut(s)	662
Psp124BI	GAGCTC	1 cut(s)	132
Psp5II	RGGWCCY	1 cut(s)	662
PspPI	GGNCC	2 cut(s)	662, 926
PspPPI	RGGWCCY	1 cut(s)	662
PsrI	GAACNNNNNNTAC	2 cut(s)	1000, 1032
PstI	CTGCAG	1 cut(s)	777
PstNI	CAGNNNCTG	1 cut(s)	356
PsuI	RGATCY	2 cut(s)	972, 1083
PvuII	CAGCTG	1 cut(s)	290
RseI	CAYNNNNRTG	1 cut(s)	732
SacI	GAGCTC	1 cut(s)	132
SapI	GCTCTTC	1 cut(s)	432
SaqAI	TTAA	1 cut(s)	1029
SatI	GCNGC	5 cut(s)	327, 441, 756, 776, 1059
Sau3AI	GATC	8 cut(s)	526, 559, 625, 784, 962, 972, 1083, 1105
Sau96I	GGNCC	2 cut(s)	662, 926
SchI	GAGTC	1 cut(s)	673
SduI	GDGCHC	3 cut(s)	132, 427, 729
SfaNI	GCATC	2 cut(s)	150, 808
SfcI	CTRYAG	1 cut(s)	773
SgrAI	CRCCGGYG	1 cut(s)	122
SinI	GGWCC	2 cut(s)	662, 926
SmiMI	CAYNNNNRTG	1 cut(s)	732
Sse9I	AATT	8 cut(s)	319, 431, 463, 617, 695, 871, 1030, 1041
SsiI	CCGC	2 cut(s)	87, 929
SspI	AATATT	1 cut(s)	812
SspMI	CTAG	3 cut(s)	437, 636, 668
SstI	GAGCTC	1 cut(s)	132
TaaI	ACNGT	2 cut(s)	597, 947
TaiI	ACGT	2 cut(s)	41, 64
TasI	AATT	8 cut(s)	319, 431, 463, 617, 695, 871, 1030, 1041
TfiI	GAWTC	7 cut(s)	13, 107, 256, 284, 411, 482, 565
Tru1I	TTAA	1 cut(s)	1029
Tru9I	TTAA	1 cut(s)	1029
TscAI	CASTG	3 cut(s)	81, 139, 561
TseFI	GTSAC	2 cut(s)	826, 991
TseI	GCWGC	5 cut(s)	326, 440, 755, 775, 1058
Tsp45I	GTSAC	2 cut(s)	826, 991
TspDTI	ATGAA	5 cut(s)	17, 269, 369, 770, 1034
TspGWI	ACGGA	1 cut(s)	744
TspRI	CASTG	3 cut(s)	81, 139, 561
VpaK11BI	GGWCC	2 cut(s)	662, 926
XapI	RAATTY	2 cut(s)	695, 1041
XmnI	GAANNNNTTC	1 cut(s)	1099
XspI	CTAG	3 cut(s)	437, 636, 668

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.