Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0002437

Physical Location & Seq

Genomic Coordinates Forward (+)

29444779 .. 29446363

Gene Structure 1585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1209200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGCTTCAATCACATTGCAGCTTCTCTGTCCTAAGCTTTCATATTTCAACATCCATGGCTGCCAAGAACTACATTATTCTCAGAATGTTCGCCTTGCTGGCAACTGCTTTACCGGCTGCCAGTTCGATAAAGTTCAGCTATCCGGCGGTTTTCAACTTCGGGGATTCAAACTCCGACACCGGGGAGCTTGGTGCTGGGCTTGGTTTCAACCTTCCGCTGCCTTATGGACAGACCTACTTCAATCCTCCGTCATCATCGGGGAGGGCTTCCGATGGCCGTCTGATCGTAGATTTTCTGATCTCTTCATCCATGGCTACCAAAACTTCGACCCTCCAAATTTTCACCTTATTTTCCATTTTTCTACCTTCTTCAAACTCAACCAAGTTCTACTACCCCACCGCTTTCAACTTCGGCGATTCAAACTCCGACACAGCGTGCTTGCTGCCGGCTGATTTCCAGCTCCCACCACCATATGGACAGTCTTTCTTCAAAACTCCATCTGGGAGGTTTTGTCATGGCCGTCTCGTCATAGATTTTCTCAGTAAATTTCTCACAACTCACTTTTGCAATGTTTTTTCTTTACCCCACAACGGTTTATCCCATTTTCACATTTTTATATTACACATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00901 ko01110 map00901 map01110

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

210

Amino Acids

22.97

Weight (kDa)

8.38

Isoelectric Point (pI)

45.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54790 AT1G54790 AT1G54790
fragaria_vesca	FvH4_6g05321 FvH4_6g05321 FvH4_6g05321 FvH4_6g05330 FvH4_6g05330 FvH4_6g05330 FvH4_6g05330
malus_domestica	MD04G1209200.v1.1 MD04G1209300.v1.1 MD12G1223900.v1.1
prunus_persica	Prupe.6G330300_v2.0.a1 Prupe.6G330300_v2.0.a1 Prupe.6G330300_v2.0.a1 Prupe.6G330300_v2.0.a1
pyrus_communis	pycom04g18540 pycom04g18550 pycom12g20930 pycom12g20950
rosa_chinensis	RchiOBHm_Chr3g0454071 RchiOBHm_Chr3g0454091
rosa_laevigata	RLG00000025484
rosa_multiflora	Rmu_sc0020696.1_g000003 Rmu_sc0020696.1_g000004 Rmu_sc0026189.1_g000003 Rmu_sc0026189.1_g000004 Rmu_sc0040155.1_g000002
rosa_roxburghii	Rroxscaffold_6G00430880
rosa_rugosa	Rorug02G0652900
rosa_samantha	Rh3AG055700 Rh3AG055800 Rh3BG057100 Rh3BG057200 Rh3CG056400 Rh3CG056500 Rh3DG057700 Rh3DG057800
rosa_wichuraiana	Rw3G004270 Rw3G004280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	473
AciI	CCGC	3 cut(s)	146, 215, 399
AcoI	YGGCCR	2 cut(s)	274, 517
AcsI	RAATTY	2 cut(s)	336, 545
AdeI	CACNNNGTG	1 cut(s)	435
AfiI	CCNNNNNNNGG	3 cut(s)	180, 473, 590
AflIII	ACRYGT	1 cut(s)	624
AluBI	AGCT	5 cut(s)	21, 36, 138, 187, 460
AluI	AGCT	5 cut(s)	21, 36, 138, 187, 460
Alw26I	GTCTC	1 cut(s)	527
AoxI	GGCC	2 cut(s)	274, 517
ApeKI	GCWGC	5 cut(s)	18, 59, 116, 217, 442
ApoI	RAATTY	2 cut(s)	336, 545
AsuC2I	CCSGG	1 cut(s)	181
AsuHPI	GGTGA	1 cut(s)	334
BbvI	GCAGC	5 cut(s)	30, 46, 103, 204, 429
BccI	CCATC	2 cut(s)	266, 505
BceAI	ACGGC	2 cut(s)	261, 504
BcnI	CCSGG	1 cut(s)	181
BcoDI	GTCTC	1 cut(s)	527
BglI	GCCNNNNNGGC	1 cut(s)	98
BisI	GCNGC	5 cut(s)	19, 60, 117, 218, 443
BlsI	GCNGC	5 cut(s)	20, 61, 118, 219, 444
Bme1390I	CCNGG	1 cut(s)	181
BmrFI	CCNGG	1 cut(s)	181
Bpu10I	CCTNAGC	1 cut(s)	32
BpuMI	CCSGG	1 cut(s)	181
BsaJI	CCNNGG	3 cut(s)	54, 180, 309
BsaXI	ACNNNNNCTCC	2 cut(s)	496, 526
Bsc4I	CCNNNNNNNGG	3 cut(s)	180, 473, 590
Bse118I	RCCGGY	2 cut(s)	112, 445
Bse1I	ACTGG	1 cut(s)	120
Bse3DI	GCAATG	2 cut(s)	13, 574
BseDI	CCNNGG	3 cut(s)	54, 180, 309
BseGI	GGATG	2 cut(s)	50, 305
BseLI	CCNNNNNNNGG	3 cut(s)	180, 473, 590
BseMI	GCAATG	2 cut(s)	13, 574
BseMII	CTCAG	2 cut(s)	94, 553
BseNI	ACTGG	1 cut(s)	120
BseXI	GCAGC	5 cut(s)	30, 46, 103, 204, 429
BseYI	CCCAGC	1 cut(s)	194
BshFI	GGCC	2 cut(s)	276, 519
BsiSI	CCGG	4 cut(s)	113, 143, 180, 446
BslI	CCNNNNNNNGG	3 cut(s)	180, 473, 590
BsmAI	GTCTC	1 cut(s)	527
BsmBI	CGTCTC	1 cut(s)	527
BsnI	GGCC	2 cut(s)	276, 519
Bsp143I	GATC	2 cut(s)	282, 297
Bsp19I	CCATGG	2 cut(s)	54, 309
BspACI	CCGC	3 cut(s)	146, 215, 399
BspANI	GGCC	2 cut(s)	276, 519
BspCNI	CTCAG	2 cut(s)	93, 552
BsrDI	GCAATG	2 cut(s)	13, 574
BsrFI	RCCGGY	2 cut(s)	112, 445
BsrI	ACTGG	1 cut(s)	120
BssAI	RCCGGY	2 cut(s)	112, 445
BssECI	CCNNGG	3 cut(s)	54, 180, 309
BssMI	GATC	2 cut(s)	282, 297
BssT1I	CCWWGG	2 cut(s)	54, 309
Bst4CI	ACNGT	2 cut(s)	480, 593
Bst6I	CTCTTC	1 cut(s)	307
BstC8I	GCNNGC	4 cut(s)	99, 436, 440, 447
BstDEI	CTNAG	3 cut(s)	32, 80, 539
BstDSI	CCRYGG	2 cut(s)	54, 309
BstF5I	GGATG	2 cut(s)	50, 305
BstKTI	GATC	2 cut(s)	285, 300
BstMAI	GTCTC	1 cut(s)	527
BstMBI	GATC	2 cut(s)	282, 297
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 113
BstNSI	RCATGY	1 cut(s)	628
BstSCI	CCNGG	1 cut(s)	179
BstV1I	GCAGC	5 cut(s)	30, 46, 103, 204, 429
BsuRI	GGCC	2 cut(s)	276, 519
BtgI	CCRYGG	2 cut(s)	54, 309
BtsCI	GGATG	2 cut(s)	50, 305
Cac8I	GCNNGC	4 cut(s)	99, 436, 440, 447
Cfr10I	RCCGGY	2 cut(s)	112, 445
CviAII	CATG	4 cut(s)	55, 310, 515, 625
DdeI	CTNAG	3 cut(s)	32, 80, 539
DpnI	GATC	2 cut(s)	284, 299
DpnII	GATC	2 cut(s)	282, 297
DraIII	CACNNNGTG	1 cut(s)	435
EaeI	YGGCCR	2 cut(s)	274, 517
Eam1104I	CTCTTC	1 cut(s)	307
EarI	CTCTTC	1 cut(s)	307
Eco130I	CCWWGG	2 cut(s)	54, 309
EcoT14I	CCWWGG	2 cut(s)	54, 309
ErhI	CCWWGG	2 cut(s)	54, 309
Esp3I	CGTCTC	1 cut(s)	527
FaeI	CATG	4 cut(s)	58, 313, 518, 628
FatI	CATG	4 cut(s)	54, 309, 514, 624
FauNDI	CATATG	1 cut(s)	472
Fnu4HI	GCNGC	5 cut(s)	19, 60, 117, 218, 443
FokI	GGATG	2 cut(s)	37, 292
Fsp4HI	GCNGC	5 cut(s)	19, 60, 117, 218, 443
GluI	GCNGC	5 cut(s)	19, 60, 117, 218, 443
GsaI	CCCAGC	1 cut(s)	198
HaeIII	GGCC	2 cut(s)	276, 519
HapII	CCGG	4 cut(s)	113, 143, 180, 446
Hin1II	CATG	4 cut(s)	58, 313, 518, 628
HindIII	AAGCTT	1 cut(s)	34
HinfI	GANTC	2 cut(s)	164, 416
HpaII	CCGG	4 cut(s)	113, 143, 180, 446
HphI	GGTGA	1 cut(s)	334
Hpy188I	TCNGA	6 cut(s)	83, 175, 271, 282, 297, 427
HpyAV	CCTTC	2 cut(s)	221, 375
HpyCH4III	ACNGT	2 cut(s)	480, 593
HpyCH4V	TGCA	2 cut(s)	18, 567
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 113
HpyF3I	CTNAG	3 cut(s)	32, 80, 539
Hsp92II	CATG	4 cut(s)	58, 313, 518, 628
KroI	GCCGGC	1 cut(s)	445
KroNI	GCCGGC	1 cut(s)	447
Kzo9I	GATC	2 cut(s)	282, 297
LmnI	GCTCC	2 cut(s)	184, 465
LpnPI	CCDG	9 cut(s)	83, 126, 133, 156, 180, 193, 459, 470, 486
Lsp1109I	GCAGC	5 cut(s)	30, 46, 103, 204, 429
MalI	GATC	2 cut(s)	284, 299
MboI	GATC	2 cut(s)	282, 297
MboII	GAAGA	3 cut(s)	294, 360, 478
MluCI	AATT	2 cut(s)	336, 545
MmeI	TCCRAC	2 cut(s)	198, 450
MnlI	CCTC	4 cut(s)	255, 255, 341, 498
MroNI	GCCGGC	1 cut(s)	445
MspA1I	CMGCKG	1 cut(s)	217
MspI	CCGG	4 cut(s)	113, 143, 180, 446
MspR9I	CCNGG	1 cut(s)	181
MwoI	GCNNNNNNNGC	2 cut(s)	98, 113
NaeI	GCCGGC	1 cut(s)	447
NciI	CCSGG	1 cut(s)	181
NcoI	CCATGG	2 cut(s)	54, 309
NdeI	CATATG	1 cut(s)	472
NdeII	GATC	2 cut(s)	282, 297
NgoMIV	GCCGGC	1 cut(s)	445
NlaIII	CATG	4 cut(s)	58, 313, 518, 628
NspI	RCATGY	1 cut(s)	628
PciI	ACATGT	1 cut(s)	624
PdiI	GCCGGC	1 cut(s)	447
PfeI	GAWTC	2 cut(s)	164, 416
PflMI	CCANNNNNTGG	1 cut(s)	473
PkrI	GCNGC	5 cut(s)	20, 61, 118, 219, 444
PscI	ACATGT	1 cut(s)	624
PspFI	CCCAGC	1 cut(s)	194
SatI	GCNGC	5 cut(s)	19, 60, 117, 218, 443
Sau3AI	GATC	2 cut(s)	282, 297
ScrFI	CCNGG	1 cut(s)	181
Sse9I	AATT	2 cut(s)	336, 545
SsiI	CCGC	3 cut(s)	146, 215, 399
StyD4I	CCNGG	1 cut(s)	179
StyI	CCWWGG	2 cut(s)	54, 309
TaaI	ACNGT	2 cut(s)	480, 593
TaqI	TCGA	2 cut(s)	125, 326
TasI	AATT	2 cut(s)	336, 545
TfiI	GAWTC	2 cut(s)	164, 416
TseI	GCWGC	5 cut(s)	18, 59, 116, 217, 442
TspDTI	ATGAA	2 cut(s)	29, 294
TspGWI	ACGGA	1 cut(s)	237
Van91I	CCANNNNNTGG	1 cut(s)	473
XapI	RAATTY	2 cut(s)	336, 545
XceI	RCATGY	1 cut(s)	628

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.