Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0016098

Physical Location & Seq

Genomic Coordinates Reverse (-)

30037435 .. 30039123

Gene Structure 1689 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1224000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGAAACCATGATTTCTTCTCCCTCACTCTCTCCTCTCTTAAACACAAAACCTTCTTCTTTTAAGACCCCTTTGCCCCCCTCCCTCCAACCCAATACCAAACCTCTCCTCATCACTTCAAGCCTAAAAAATCACTCAATCCAATCACCAAAAACATCTCCACCAACACCCACAAATTGGGTTTCTTTTGCTCAGCAAGGACTAGCTGCTCTTGCACTTTCATTGGCACTAAACTTCTGCCCAATATTGCCTGATGGCAATGCACTAGCATCTGAGTTTGATGTGCTCAATGAAGGACCCCCAAAAGAGTCCTATGTTGTTGATGATGCCGGCGTACTCAGCCGCGTGACGAAAGCGGATATAAAGAATTTGATGCAGGAATTGGAGTACAAGAAGAACTTCCGGATCAATTTCATCACTGTTAGAAAGCTCACTAGCAAAGCTGATGCTTTTGAGTATGCTGACCAAGTTTTGGAAAAATGGTACCCTTCTGTTGAAGAGGGCAACAATAAGGGCATTGTTGTGCTTGTCACCAGCCAAAAAGAAGGTGCGGTCACAGGTGGTCCTGCATTTGTTCAAGCTGTTGGAGAAAGTATCCTTGATGCAACTGTATCTGAAAACCTTCCTGTCTTGGCAACAGAAGAAAAGTACAATGAAGCCATTTTCAGCAGTGCCAAACGGCTAGTTGCTGCGATTAACGGACTTCCAGATCCTGGCGGACCCAAAGTTAATGAAAACAAACGCGAATCCAACTTCAAAACCAAGGAGGAGACAGACGAGAAACGCGGGCAGTTCAGTCTTGTAGTTGGAGGATTGCTGGTGATTGCCTTTGTTGTTCCTATGGCACAGTACTATGCTTATGTCTCAAGGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009765 GO:0009987 GO:0010206 GO:0015979 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0019684 GO:0030091 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042578 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPM_phosphatase

Protein Analysis

292

Amino Acids

31.62

Weight (kDa)

6.04

Isoelectric Point (pI)

39.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPM_phosphatase	PF04536	106 - 230	6.3e-20	TPM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54780
fragaria_vesca	FvH4_6g05320
malus_domestica	MD04G1209400.v1.1 MD12G1224000.v1.1
prunus_persica	Prupe.6G330400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0454061
rosa_laevigata	RLG00000025485
rosa_multiflora	Rmu_sc0040155.1_g000001
rosa_roxburghii	Rroxscaffold_6G00430870
rosa_rugosa	Rorug02G0652900
rosa_samantha	Rh3AG055600 Rh3BG057000 Rh3CG056300 Rh3DG057600
rosa_wichuraiana	Rw3G004260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	483
AccB1I	GGYRCC	1 cut(s)	483
AccB7I	CCANNNNNTGG	3 cut(s)	177, 472, 713
AccII	CGCG	3 cut(s)	345, 744, 786
AccIII	TCCGGA	1 cut(s)	402
AciI	CCGC	5 cut(s)	343, 356, 551, 717, 786
AclWI	GGATC	2 cut(s)	413, 704
AcsI	RAATTY	1 cut(s)	367
AfaI	GTAC	5 cut(s)	336, 389, 485, 650, 851
AfiI	CCNNNNNNNGG	3 cut(s)	177, 472, 713
AgsI	TTSAA	4 cut(s)	120, 497, 578, 757
AjnI	CCWGG	1 cut(s)	712
AluBI	AGCT	4 cut(s)	206, 430, 443, 581
AluI	AGCT	4 cut(s)	206, 430, 443, 581
Alw21I	GWGCWC	1 cut(s)	288
Alw26I	GTCTC	2 cut(s)	764, 868
AlwI	GGATC	2 cut(s)	413, 704
AlwNI	CAGNNNCTG	1 cut(s)	713
Aor13HI	TCCGGA	1 cut(s)	402
ApeKI	GCWGC	2 cut(s)	206, 689
ApoI	RAATTY	1 cut(s)	367
Asp700I	GAANNNNTTC	2 cut(s)	398, 621
Asp718I	GGTACC	1 cut(s)	483
AspS9I	GGNCC	3 cut(s)	296, 563, 719
AsuHPI	GGTGA	3 cut(s)	138, 523, 832
AvaII	GGWCC	3 cut(s)	296, 563, 719
BanI	GGYRCC	1 cut(s)	483
Bbv12I	GWGCWC	1 cut(s)	288
BbvI	GCAGC	2 cut(s)	193, 676
BccI	CCATC	1 cut(s)	248
BceAI	ACGGC	1 cut(s)	695
BciT130I	CCWGG	1 cut(s)	714
BciVI	GTATCC	1 cut(s)	605
BcoDI	GTCTC	2 cut(s)	764, 868
BfaI	CTAG	4 cut(s)	203, 266, 435, 683
BfuI	GTATCC	1 cut(s)	605
BisI	GCNGC	3 cut(s)	207, 343, 690
BlpI	GCTNAGC	1 cut(s)	192
BlsI	GCNGC	3 cut(s)	208, 344, 691
BmcAI	AGTACT	1 cut(s)	851
Bme1390I	CCNGG	1 cut(s)	714
Bme18I	GGWCC	3 cut(s)	296, 563, 719
BmgT120I	GGNCC	3 cut(s)	296, 563, 719
BmiI	GGNNCC	3 cut(s)	298, 485, 721
BmrFI	CCNGG	1 cut(s)	714
BmsI	GCATC	5 cut(s)	278, 316, 363, 436, 592
Bpu1102I	GCTNAGC	1 cut(s)	192
BpuEI	CTTGAG	1 cut(s)	850
BsaJI	CCNNGG	1 cut(s)	762
BsaWI	WCCGGW	1 cut(s)	402
Bsc4I	CCNNNNNNNGG	3 cut(s)	177, 472, 713
Bse118I	RCCGGY	1 cut(s)	329
Bse3DI	GCAATG	1 cut(s)	265
BseAI	TCCGGA	1 cut(s)	402
BseBI	CCWGG	1 cut(s)	714
BseDI	CCNNGG	1 cut(s)	762
BseLI	CCNNNNNNNGG	3 cut(s)	177, 472, 713
BseMI	GCAATG	1 cut(s)	265
BseMII	CTCAG	3 cut(s)	206, 264, 352
BseRI	GAGGAG	3 cut(s)	24, 98, 782
BseXI	GCAGC	2 cut(s)	193, 676
Bsh1236I	CGCG	3 cut(s)	345, 744, 786
BshNI	GGYRCC	1 cut(s)	483
BsiHKAI	GWGCWC	1 cut(s)	288
BsiSI	CCGG	2 cut(s)	330, 403
BslI	CCNNNNNNNGG	3 cut(s)	177, 472, 713
BsmAI	GTCTC	2 cut(s)	764, 868
Bsp1286I	GDGCHC	1 cut(s)	288
Bsp13I	TCCGGA	1 cut(s)	402
Bsp143I	GATC	2 cut(s)	405, 709
Bsp1720I	GCTNAGC	1 cut(s)	192
BspACI	CCGC	5 cut(s)	343, 356, 551, 717, 786
BspCNI	CTCAG	3 cut(s)	205, 265, 351
BspEI	TCCGGA	1 cut(s)	402
BspFNI	CGCG	3 cut(s)	345, 744, 786
BspLI	GGNNCC	3 cut(s)	298, 485, 721
BspPI	GGATC	2 cut(s)	413, 704
BspT107I	GGYRCC	1 cut(s)	483
BsrDI	GCAATG	1 cut(s)	265
BsrFI	RCCGGY	1 cut(s)	329
BssAI	RCCGGY	1 cut(s)	329
BssECI	CCNNGG	1 cut(s)	762
BssMI	GATC	2 cut(s)	405, 709
BssT1I	CCWWGG	1 cut(s)	762
Bst2UI	CCWGG	1 cut(s)	714
Bst4CI	ACNGT	3 cut(s)	421, 610, 849
Bst6I	CTCTTC	1 cut(s)	492
BstC8I	GCNNGC	2 cut(s)	331, 788
BstDEI	CTNAG	3 cut(s)	192, 273, 338
BstFNI	CGCG	3 cut(s)	345, 744, 786
BstKTI	GATC	2 cut(s)	408, 712
BstMAI	GTCTC	2 cut(s)	764, 868
BstMBI	GATC	2 cut(s)	405, 709
BstMWI	GCNNNNNNNGC	2 cut(s)	212, 339
BstNI	CCWGG	1 cut(s)	714
BstSCI	CCNGG	1 cut(s)	712
BstUI	CGCG	3 cut(s)	345, 744, 786
BstV1I	GCAGC	2 cut(s)	193, 676
BstX2I	RGATCY	1 cut(s)	709
BstYI	RGATCY	1 cut(s)	709
BsuI	GTATCC	1 cut(s)	605
BtsI	GCAGTG	1 cut(s)	676
BtsIMutI	CAGTG	2 cut(s)	417, 676
Cac8I	GCNNGC	2 cut(s)	331, 788
CaiI	CAGNNNCTG	1 cut(s)	713
Cfr10I	RCCGGY	1 cut(s)	329
Cfr13I	GGNCC	3 cut(s)	296, 563, 719
Csp6I	GTAC	5 cut(s)	335, 388, 484, 649, 850
CviAII	CATG	1 cut(s)	10
CviJI	RGCY	9 cut(s)	123, 206, 342, 430, 443, 537, 581, 659, 682
CviKI_1	RGCY	9 cut(s)	123, 206, 342, 430, 443, 537, 581, 659, 682
CviQI	GTAC	5 cut(s)	335, 388, 484, 649, 850
DdeI	CTNAG	3 cut(s)	192, 273, 338
DpnI	GATC	2 cut(s)	407, 711
DpnII	GATC	2 cut(s)	405, 709
Eam1104I	CTCTTC	1 cut(s)	492
EarI	CTCTTC	1 cut(s)	492
EciI	GGCGGA	1 cut(s)	732
Eco130I	CCWWGG	1 cut(s)	762
Eco47I	GGWCC	3 cut(s)	296, 563, 719
EcoO109I	RGGNCCY	1 cut(s)	296
EcoRII	CCWGG	1 cut(s)	712
EcoT14I	CCWWGG	1 cut(s)	762
ErhI	CCWWGG	1 cut(s)	762
FaeI	CATG	1 cut(s)	13
FaiI	YATR	7 cut(s)	11, 315, 362, 459, 842, 855, 861
FalI	AAGNNNNNCTT	2 cut(s)	383, 415
FatI	CATG	1 cut(s)	9
FauI	CCCGC	1 cut(s)	779
Fnu4HI	GCNGC	3 cut(s)	207, 343, 690
Fsp4HI	GCNGC	3 cut(s)	207, 343, 690
FspBI	CTAG	4 cut(s)	203, 266, 435, 683
GluI	GCNGC	3 cut(s)	207, 343, 690
HapII	CCGG	2 cut(s)	330, 403
Hin1II	CATG	1 cut(s)	13
HinfI	GANTC	2 cut(s)	308, 746
HpaII	CCGG	2 cut(s)	330, 403
HphI	GGTGA	3 cut(s)	138, 523, 832
Hpy188I	TCNGA	2 cut(s)	274, 616
Hpy188III	TCNNGA	2 cut(s)	403, 707
HpyAV	CCTTC	5 cut(s)	63, 287, 498, 539, 632
HpyCH4III	ACNGT	3 cut(s)	421, 610, 849
HpyCH4V	TGCA	5 cut(s)	215, 263, 376, 569, 605
HpyF10VI	GCNNNNNNNGC	2 cut(s)	212, 339
HpyF3I	CTNAG	3 cut(s)	192, 273, 338
Hsp92II	CATG	1 cut(s)	13
Kpn2I	TCCGGA	1 cut(s)	402
KpnI	GGTACC	1 cut(s)	487
KroI	GCCGGC	1 cut(s)	329
KroNI	GCCGGC	1 cut(s)	331
Kzo9I	GATC	2 cut(s)	405, 709
Lsp1109I	GCAGC	2 cut(s)	193, 676
LweI	GCATC	5 cut(s)	278, 316, 363, 436, 592
MaeI	CTAG	4 cut(s)	203, 266, 435, 683
MaeIII	GTNAC	3 cut(s)	346, 529, 553
MalI	GATC	2 cut(s)	407, 711
MboI	GATC	2 cut(s)	405, 709
MboII	GAAGA	5 cut(s)	9, 48, 406, 509, 653
MflI	RGATCY	1 cut(s)	709
MhlI	GDGCHC	1 cut(s)	288
MluCI	AATT	4 cut(s)	175, 367, 380, 409
MlyI	GAGTC	1 cut(s)	317
MmeI	TCCRAC	4 cut(s)	112, 565, 774, 787
MnlI	CCTC	9 cut(s)	34, 45, 91, 95, 114, 119, 493, 760, 803
MroI	TCCGGA	1 cut(s)	402
MroNI	GCCGGC	1 cut(s)	329
MroXI	GAANNNNTTC	2 cut(s)	398, 621
MseI	TTAA	4 cut(s)	41, 63, 696, 729
MslI	CAYNNNNRTG	1 cut(s)	521
MspI	CCGG	2 cut(s)	330, 403
MspR9I	CCNGG	1 cut(s)	714
MvaI	CCWGG	1 cut(s)	714
MvnI	CGCG	3 cut(s)	345, 744, 786
MwoI	GCNNNNNNNGC	2 cut(s)	212, 339
NaeI	GCCGGC	1 cut(s)	331
NdeII	GATC	2 cut(s)	405, 709
NgoMIV	GCCGGC	1 cut(s)	329
NlaIII	CATG	1 cut(s)	13
NlaIV	GGNNCC	3 cut(s)	298, 485, 721
NmuCI	GTSAC	3 cut(s)	346, 529, 553
PdiI	GCCGGC	1 cut(s)	331
PdmI	GAANNNNTTC	2 cut(s)	398, 621
PfeI	GAWTC	1 cut(s)	746
PflMI	CCANNNNNTGG	3 cut(s)	177, 472, 713
PkrI	GCNGC	3 cut(s)	208, 344, 691
PleI	GAGTC	1 cut(s)	316
PpsI	GAGTC	1 cut(s)	316
PpuMI	RGGWCCY	1 cut(s)	296
Psp5II	RGGWCCY	1 cut(s)	296
Psp6I	CCWGG	1 cut(s)	712
PspGI	CCWGG	1 cut(s)	712
PspN4I	GGNNCC	3 cut(s)	298, 485, 721
PspPI	GGNCC	3 cut(s)	296, 563, 719
PspPPI	RGGWCCY	1 cut(s)	296
PstNI	CAGNNNCTG	1 cut(s)	713
PsuI	RGATCY	1 cut(s)	709
RsaI	GTAC	5 cut(s)	336, 389, 485, 650, 851
RsaNI	GTAC	5 cut(s)	335, 388, 484, 649, 850
RseI	CAYNNNNRTG	1 cut(s)	521
SaqAI	TTAA	4 cut(s)	41, 63, 696, 729
SatI	GCNGC	3 cut(s)	207, 343, 690
Sau3AI	GATC	2 cut(s)	405, 709
Sau96I	GGNCC	3 cut(s)	296, 563, 719
ScaI	AGTACT	1 cut(s)	851
SchI	GAGTC	1 cut(s)	317
ScrFI	CCNGG	1 cut(s)	714
SduI	GDGCHC	1 cut(s)	288
SetI	ASST	9 cut(s)	55, 106, 208, 432, 445, 550, 562, 583, 624
SfaNI	GCATC	5 cut(s)	278, 316, 363, 436, 592
SinI	GGWCC	3 cut(s)	296, 563, 719
SmiMI	CAYNNNNRTG	1 cut(s)	521
SmlI	CTYRAG	1 cut(s)	865
SmoI	CTYRAG	1 cut(s)	865
Sse9I	AATT	4 cut(s)	175, 367, 380, 409
SsiI	CCGC	5 cut(s)	343, 356, 551, 717, 786
SspI	AATATT	1 cut(s)	246
SspMI	CTAG	4 cut(s)	203, 266, 435, 683
StyD4I	CCNGG	1 cut(s)	712
StyI	CCWWGG	1 cut(s)	762
TaaI	ACNGT	3 cut(s)	421, 610, 849
TasI	AATT	4 cut(s)	175, 367, 380, 409
TatI	WGTACW	3 cut(s)	387, 648, 849
TauI	GCSGC	1 cut(s)	345
TfiI	GAWTC	1 cut(s)	746
Tru1I	TTAA	4 cut(s)	41, 63, 696, 729
Tru9I	TTAA	4 cut(s)	41, 63, 696, 729
TscAI	CASTG	2 cut(s)	424, 676
TseFI	GTSAC	3 cut(s)	346, 529, 553
TseI	GCWGC	2 cut(s)	206, 689
Tsp45I	GTSAC	3 cut(s)	346, 529, 553
TspDTI	ATGAA	5 cut(s)	210, 306, 403, 669, 747
TspGWI	ACGGA	1 cut(s)	714
TspRI	CASTG	2 cut(s)	424, 676
Van91I	CCANNNNNTGG	3 cut(s)	177, 472, 713
VpaK11BI	GGWCC	3 cut(s)	296, 563, 719
XapI	RAATTY	1 cut(s)	367
XmnI	GAANNNNTTC	2 cut(s)	398, 621
XspI	CTAG	4 cut(s)	203, 266, 435, 683
ZrmI	AGTACT	1 cut(s)	851

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.