Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040155.1

Orthogroup ID

OG0016098

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1068

Gene Structure 1068 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040155.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

cgggtgaccaaatctgatgtgaagcgattgttacaagacttggaagataggaagaacttccacatcaatttcatcactgtcagaaagctcactagcaaagctgatgcttttgagtatgctgaccaagttttagagaagtggtacccttcagttgaggagggcaacaacaagggcattgttgtccttgtcaccagtcaaaaagaaggagcaatcacaggtggacctgcatttgttcaagctgtgggagaaggtgtccttgatgcaactgtatcagagaaccttcctgtcttggctactgaggagaagtacaatgaagctatttacagtagcgcaaaacggatagtcgctgccattgatggacttccagatcctggtggaccaaagcttaacgaaaacaagcgtgaatccaacttcaaaaccaaggaagagacagaagagaaacgaggacagttcactcttgtagttggaggattgttagtgattgcctttgttgttcccatggcacaatactatgcttatgtctctaggaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009765 GO:0009987 GO:0010206 GO:0015979 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0019684 GO:0030091 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042578 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPM_phosphatase

Protein Analysis

177

Amino Acids

19.61

Weight (kDa)

6.01

Isoelectric Point (pI)

40.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54780
fragaria_vesca	FvH4_6g05320
malus_domestica	MD04G1209400.v1.1 MD12G1224000.v1.1
prunus_persica	Prupe.6G330400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0454061
rosa_laevigata	RLG00000025485
rosa_multiflora	Rmu_sc0040155.1_g000001
rosa_roxburghii	Rroxscaffold_6G00430870
rosa_rugosa	Rorug02G0652900
rosa_samantha	Rh3AG055600 Rh3BG057000 Rh3CG056300 Rh3DG057600
rosa_wichuraiana	Rw3G004260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	232
Acc65I	GGTACC	1 cut(s)	141
AccB1I	GGYRCC	1 cut(s)	141
AccB7I	CCANNNNNTGG	1 cut(s)	371
AclWI	GGATC	1 cut(s)	362
AcuI	CTGAAG	1 cut(s)	132
AfaI	GTAC	2 cut(s)	143, 308
AfiI	CCNNNNNNNGG	1 cut(s)	371
AgsI	TTSAA	2 cut(s)	236, 415
AjnI	CCWGG	1 cut(s)	370
AluBI	AGCT	5 cut(s)	88, 101, 239, 317, 385
AluI	AGCT	5 cut(s)	88, 101, 239, 317, 385
Alw26I	GTCTC	2 cut(s)	422, 526
AlwI	GGATC	1 cut(s)	362
AlwNI	CAGNNNCTG	1 cut(s)	371
ApeKI	GCWGC	1 cut(s)	347
Asp700I	GAANNNNTTC	1 cut(s)	56
Asp718I	GGTACC	1 cut(s)	141
AspLEI	GCGC	1 cut(s)	332
AspS9I	GGNCC	2 cut(s)	221, 377
AsuHPI	GGTGA	2 cut(s)	16, 181
AvaII	GGWCC	2 cut(s)	221, 377
BanI	GGYRCC	1 cut(s)	141
BbvI	GCAGC	1 cut(s)	334
BccI	CCATC	1 cut(s)	350
BciT130I	CCWGG	1 cut(s)	372
BcoDI	GTCTC	2 cut(s)	422, 526
BfaI	CTAG	2 cut(s)	93, 525
BfuAI	ACCTGC	1 cut(s)	232
BisI	GCNGC	1 cut(s)	348
BlsI	GCNGC	1 cut(s)	349
Bme1390I	CCNGG	1 cut(s)	372
Bme18I	GGWCC	2 cut(s)	221, 377
BmgT120I	GGNCC	2 cut(s)	221, 377
BmiI	GGNNCC	1 cut(s)	143
BmrFI	CCNGG	1 cut(s)	372
BmsI	GCATC	2 cut(s)	94, 250
BsaJI	CCNNGG	2 cut(s)	420, 498
BsaXI	ACNNNNNCTCC	2 cut(s)	237, 267
Bsc4I	CCNNNNNNNGG	1 cut(s)	371
Bse1I	ACTGG	1 cut(s)	192
BseBI	CCWGG	1 cut(s)	372
BseDI	CCNNGG	2 cut(s)	420, 498
BseLI	CCNNNNNNNGG	1 cut(s)	371
BseMII	CTCAG	1 cut(s)	288
BseNI	ACTGG	1 cut(s)	192
BseRI	GAGGAG	2 cut(s)	170, 314
BseXI	GCAGC	1 cut(s)	334
BshNI	GGYRCC	1 cut(s)	141
BslI	CCNNNNNNNGG	1 cut(s)	371
BsmAI	GTCTC	2 cut(s)	422, 526
Bsp143I	GATC	1 cut(s)	367
Bsp19I	CCATGG	1 cut(s)	498
BspCNI	CTCAG	1 cut(s)	289
BspLI	GGNNCC	1 cut(s)	143
BspMI	ACCTGC	1 cut(s)	232
BspPI	GGATC	1 cut(s)	362
BspT107I	GGYRCC	1 cut(s)	141
BsrI	ACTGG	1 cut(s)	192
BssECI	CCNNGG	2 cut(s)	420, 498
BssMI	GATC	1 cut(s)	367
BssT1I	CCWWGG	2 cut(s)	420, 498
Bst2UI	CCWGG	1 cut(s)	372
Bst4CI	ACNGT	4 cut(s)	79, 268, 326, 450
Bst6I	CTCTTC	2 cut(s)	420, 429
BstDEI	CTNAG	1 cut(s)	297
BstDSI	CCRYGG	1 cut(s)	498
BstEII	GGTNACC	1 cut(s)	4
BstHHI	GCGC	1 cut(s)	332
BstKTI	GATC	1 cut(s)	370
BstMAI	GTCTC	2 cut(s)	422, 526
BstMBI	GATC	1 cut(s)	367
BstNI	CCWGG	1 cut(s)	372
BstPI	GGTNACC	1 cut(s)	4
BstSCI	CCNGG	1 cut(s)	370
BstV1I	GCAGC	1 cut(s)	334
BstX2I	RGATCY	1 cut(s)	367
BstYI	RGATCY	1 cut(s)	367
BtgI	CCRYGG	1 cut(s)	498
BtsIMutI	CAGTG	1 cut(s)	75
BveI	ACCTGC	1 cut(s)	232
CaiI	CAGNNNCTG	1 cut(s)	371
CfoI	GCGC	1 cut(s)	332
Cfr13I	GGNCC	2 cut(s)	221, 377
Csp6I	GTAC	2 cut(s)	142, 307
CviAII	CATG	1 cut(s)	499
CviJI	RGCY	6 cut(s)	88, 101, 239, 293, 317, 385
CviKI_1	RGCY	6 cut(s)	88, 101, 239, 293, 317, 385
CviQI	GTAC	2 cut(s)	142, 307
DdeI	CTNAG	1 cut(s)	297
DpnI	GATC	1 cut(s)	369
DpnII	GATC	1 cut(s)	367
Eam1104I	CTCTTC	2 cut(s)	420, 429
EarI	CTCTTC	2 cut(s)	420, 429
Eco130I	CCWWGG	2 cut(s)	420, 498
Eco47I	GGWCC	2 cut(s)	221, 377
Eco57I	CTGAAG	1 cut(s)	132
Eco91I	GGTNACC	1 cut(s)	4
EcoO65I	GGTNACC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	370
EcoT14I	CCWWGG	2 cut(s)	420, 498
ErhI	CCWWGG	2 cut(s)	420, 498
FaeI	CATG	1 cut(s)	502
FaiI	YATR	4 cut(s)	117, 500, 513, 519
FalI	AAGNNNNNCTT	2 cut(s)	240, 272
FatI	CATG	1 cut(s)	498
Fnu4HI	GCNGC	1 cut(s)	348
Fsp4HI	GCNGC	1 cut(s)	348
FspBI	CTAG	2 cut(s)	93, 525
GlaI	GCGC	1 cut(s)	331
GluI	GCNGC	1 cut(s)	348
HhaI	GCGC	1 cut(s)	332
Hin1II	CATG	1 cut(s)	502
Hin6I	GCGC	1 cut(s)	330
HinP1I	GCGC	1 cut(s)	330
HindIII	AAGCTT	1 cut(s)	383
HinfI	GANTC	1 cut(s)	404
HphI	GGTGA	2 cut(s)	16, 181
Hpy166II	GTNNAC	3 cut(s)	221, 377, 453
Hpy188I	TCNGA	3 cut(s)	16, 83, 274
Hpy188III	TCNNGA	1 cut(s)	365
Hpy8I	GTNNAC	3 cut(s)	221, 377, 453
HpyAV	CCTTC	4 cut(s)	156, 197, 242, 290
HpyCH4III	ACNGT	4 cut(s)	79, 268, 326, 450
HpyCH4V	TGCA	2 cut(s)	227, 263
HpyF3I	CTNAG	1 cut(s)	297
Hsp92II	CATG	1 cut(s)	502
HspAI	GCGC	1 cut(s)	330
KpnI	GGTACC	1 cut(s)	145
Kzo9I	GATC	1 cut(s)	367
LmnI	GCTCC	1 cut(s)	206
LpnPI	CCDG	7 cut(s)	201, 205, 237, 297, 357, 378, 384
Lsp1109I	GCAGC	1 cut(s)	334
LweI	GCATC	2 cut(s)	94, 250
MaeI	CTAG	2 cut(s)	93, 525
MaeIII	GTNAC	3 cut(s)	4, 30, 187
MalI	GATC	1 cut(s)	369
MboI	GATC	1 cut(s)	367
MboII	GAAGA	4 cut(s)	56, 64, 437, 446
MflI	RGATCY	1 cut(s)	367
MluCI	AATT	1 cut(s)	67
MmeI	TCCRAC	2 cut(s)	432, 445
MnlI	CCTC	5 cut(s)	148, 151, 292, 437, 461
MroXI	GAANNNNTTC	1 cut(s)	56
MseI	TTAA	1 cut(s)	387
MspR9I	CCNGG	1 cut(s)	372
MvaI	CCWGG	1 cut(s)	372
NcoI	CCATGG	1 cut(s)	498
NdeII	GATC	1 cut(s)	367
NlaIII	CATG	1 cut(s)	502
NlaIV	GGNNCC	1 cut(s)	143
NmuCI	GTSAC	2 cut(s)	4, 187
PdmI	GAANNNNTTC	1 cut(s)	56
PfeI	GAWTC	1 cut(s)	404
PflMI	CCANNNNNTGG	1 cut(s)	371
PkrI	GCNGC	1 cut(s)	349
Psp6I	CCWGG	1 cut(s)	370
PspEI	GGTNACC	1 cut(s)	4
PspGI	CCWGG	1 cut(s)	370
PspN4I	GGNNCC	1 cut(s)	143
PspPI	GGNCC	2 cut(s)	221, 377
PstNI	CAGNNNCTG	1 cut(s)	371
PsuI	RGATCY	1 cut(s)	367
RsaI	GTAC	2 cut(s)	143, 308
RsaNI	GTAC	2 cut(s)	142, 307
SaqAI	TTAA	1 cut(s)	387
SatI	GCNGC	1 cut(s)	348
Sau3AI	GATC	1 cut(s)	367
Sau96I	GGNCC	2 cut(s)	221, 377
ScrFI	CCNGG	1 cut(s)	372
SetI	ASST	9 cut(s)	90, 103, 220, 226, 241, 253, 282, 319, 387
SfaNI	GCATC	2 cut(s)	94, 250
SinI	GGWCC	2 cut(s)	221, 377
Sse9I	AATT	1 cut(s)	67
SspMI	CTAG	2 cut(s)	93, 525
StyD4I	CCNGG	1 cut(s)	370
StyI	CCWWGG	2 cut(s)	420, 498
TaaI	ACNGT	4 cut(s)	79, 268, 326, 450
TasI	AATT	1 cut(s)	67
TatI	WGTACW	1 cut(s)	306
TfiI	GAWTC	1 cut(s)	404
Tru1I	TTAA	1 cut(s)	387
Tru9I	TTAA	1 cut(s)	387
TscAI	CASTG	1 cut(s)	82
TseFI	GTSAC	2 cut(s)	4, 187
TseI	GCWGC	1 cut(s)	347
Tsp45I	GTSAC	2 cut(s)	4, 187
TspDTI	ATGAA	2 cut(s)	61, 327
TspGWI	ACGGA	1 cut(s)	352
TspRI	CASTG	1 cut(s)	82
Van91I	CCANNNNNTGG	1 cut(s)	371
VpaK11BI	GGWCC	2 cut(s)	221, 377
XmnI	GAANNNNTTC	1 cut(s)	56
XspI	CTAG	2 cut(s)	93, 525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.