Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0016098

Physical Location & Seq

Genomic Coordinates Reverse (-)

28848552 .. 28850617

Gene Structure 2066 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G330400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGAAACCATTCTTTCTTCTCCCTCACTCTCTCCTCTCTTCAACCCAAAACCTTCTTCTCCTAAGACGTTTTTGTCCCCCTCTCTCCAACCCAATTCAAAGTCCCTCCTCCTCACAAAACCTATCACCTCAAGCCTCAAAAAGCAATCTGTTCCATCACTCAAAACATCTTTGCCAATACCCAAGGACTGGTTCTCTTATGCCCAGCAAGGACTAGCAGCTCTTGCACTGTCTTTAGCACTAAACTTTTGCCCACTCTTGCCTAGTGGCAATGCACTAGCATCTGAGTTTGATGTTCTTAATGAGGGACCACCCAAAGATTCCTATGTTGTTGATGATGCAGGCGTGCTAAGCCGGGTGACTAAGTCGGATATAAAGAGGTTGATGTCGGAATTGGAATATAAGAAGAACTTCCACATCAATTTCATCACTGTTAGAAAGCTCACTAGCAAAGCTGATGCTTTTGAGTATGCTGACCAAGTTTTGGAGCGCTGGTACCCTTCTGTTGAAGAGGGCAACAATAAGGGCATTGTGGTGCTTGTCACCAGTCAAAAAGAAGGAGCAATCACTGGTGGCCCTGCATTTGTCCAAGCTGTTGGAGAAACTATCCTTGATGCAACTGTATCAGAGAACCTTCCTGTCTTGGCTACAGAAGAAAAGTACAATGAAGCTATTTTCAGCAGTGCCAAACGGCTAGTTGCTGCCATTGATGGGCTTCCAGACCCCGGCGGCCCCAAGCTTAATGACAACAAACGCGAATCCAATTTCAAAACCAAGGAGGAGACGGACGAAAAGCGTGGACAGTTCTCTCTTGTAGTTGGAGGATTGCTGGTGATTGCCTTTGTTGTTCCTATGGCGCAATACTATGCTTATGTCTCAAGGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009765 GO:0009987 GO:0010206 GO:0015979 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0019684 GO:0030091 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042578 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPM_phosphatase

Protein Analysis

296

Amino Acids

32.15

Weight (kDa)

7.68

Isoelectric Point (pI)

50.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54780
fragaria_vesca	FvH4_6g05320
malus_domestica	MD04G1209400.v1.1 MD12G1224000.v1.1
prunus_persica	Prupe.6G330400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0454061
rosa_laevigata	RLG00000025485
rosa_multiflora	Rmu_sc0040155.1_g000001
rosa_roxburghii	Rroxscaffold_6G00430870
rosa_rugosa	Rorug02G0652900
rosa_samantha	Rh3AG055600 Rh3BG057000 Rh3CG056300 Rh3DG057600
rosa_wichuraiana	Rw3G004260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	73
Acc65I	GGTACC	1 cut(s)	495
AccB1I	GGYRCC	1 cut(s)	495
AccB7I	CCANNNNNTGG	2 cut(s)	189, 484
AccII	CGCG	1 cut(s)	756
AciI	CCGC	1 cut(s)	729
AfaI	GTAC	2 cut(s)	497, 662
AfeI	AGCGCT	1 cut(s)	491
AfiI	CCNNNNNNNGG	4 cut(s)	189, 484, 711, 725
AgsI	TTSAA	4 cut(s)	43, 99, 509, 769
AjuI	GAANNNNNNNTTGG	4 cut(s)	40, 72, 176, 208
AluBI	AGCT	6 cut(s)	221, 442, 455, 593, 671, 739
AluI	AGCT	6 cut(s)	221, 442, 455, 593, 671, 739
Alw26I	GTCTC	2 cut(s)	776, 880
Aor51HI	AGCGCT	1 cut(s)	491
AoxI	GGCC	2 cut(s)	574, 730
ApeKI	GCWGC	2 cut(s)	218, 701
Asp700I	GAANNNNTTC	2 cut(s)	9, 410
Asp718I	GGTACC	1 cut(s)	495
AspLEI	GCGC	2 cut(s)	492, 859
AspS9I	GGNCC	3 cut(s)	308, 575, 731
AsuC2I	CCSGG	2 cut(s)	356, 726
AsuHPI	GGTGA	4 cut(s)	118, 370, 535, 844
AvaII	GGWCC	1 cut(s)	308
BanI	GGYRCC	1 cut(s)	495
BbvI	GCAGC	2 cut(s)	230, 688
BccI	CCATC	2 cut(s)	163, 704
BceAI	ACGGC	1 cut(s)	707
BcnI	CCSGG	2 cut(s)	356, 726
BcoDI	GTCTC	2 cut(s)	776, 880
BfaI	CTAG	5 cut(s)	215, 264, 278, 447, 695
BfmI	CTRYAG	1 cut(s)	648
BfoI	RGCGCY	1 cut(s)	493
BisI	GCNGC	3 cut(s)	219, 702, 730
BlpI	GCTNAGC	1 cut(s)	350
BlsI	GCNGC	3 cut(s)	220, 703, 731
Bme1390I	CCNGG	2 cut(s)	356, 726
Bme18I	GGWCC	1 cut(s)	308
BmgT120I	GGNCC	3 cut(s)	308, 575, 731
BmiI	GGNNCC	3 cut(s)	309, 497, 733
BmrFI	CCNGG	2 cut(s)	356, 726
BmsI	GCATC	4 cut(s)	290, 328, 448, 604
Bpu1102I	GCTNAGC	1 cut(s)	350
BpuEI	CTTGAG	2 cut(s)	115, 862
BpuMI	CCSGG	2 cut(s)	356, 726
BsaJI	CCNNGG	3 cut(s)	183, 724, 774
BsaXI	ACNNNNNCTCC	2 cut(s)	479, 509
Bsc4I	CCNNNNNNNGG	4 cut(s)	189, 484, 711, 725
Bse1I	ACTGG	3 cut(s)	194, 546, 574
Bse3DI	GCAATG	1 cut(s)	277
BseDI	CCNNGG	3 cut(s)	183, 724, 774
BseLI	CCNNNNNNNGG	4 cut(s)	189, 484, 711, 725
BseMI	GCAATG	1 cut(s)	277
BseMII	CTCAG	1 cut(s)	276
BseNI	ACTGG	3 cut(s)	194, 546, 574
BseRI	GAGGAG	4 cut(s)	24, 98, 101, 794
BseXI	GCAGC	2 cut(s)	230, 688
BseYI	CCCAGC	1 cut(s)	204
Bsh1236I	CGCG	1 cut(s)	756
BshFI	GGCC	2 cut(s)	576, 732
BshNI	GGYRCC	1 cut(s)	495
BsiSI	CCGG	2 cut(s)	355, 726
BslFI	GGGAC	3 cut(s)	61, 88, 321
BslI	CCNNNNNNNGG	4 cut(s)	189, 484, 711, 725
BsmAI	GTCTC	2 cut(s)	776, 880
BsmBI	CGTCTC	1 cut(s)	776
BsmFI	GGGAC	3 cut(s)	61, 88, 321
BsnI	GGCC	2 cut(s)	576, 732
Bsp1720I	GCTNAGC	1 cut(s)	350
BspACI	CCGC	1 cut(s)	729
BspANI	GGCC	2 cut(s)	576, 732
BspCNI	CTCAG	1 cut(s)	277
BspFNI	CGCG	1 cut(s)	756
BspLI	GGNNCC	3 cut(s)	309, 497, 733
BspT107I	GGYRCC	1 cut(s)	495
BsrDI	GCAATG	1 cut(s)	277
BsrI	ACTGG	3 cut(s)	194, 546, 574
BssECI	CCNNGG	3 cut(s)	183, 724, 774
BssT1I	CCWWGG	2 cut(s)	183, 774
Bst4CI	ACNGT	4 cut(s)	231, 433, 622, 804
Bst6I	CTCTTC	2 cut(s)	44, 504
BstAPI	GCANNNNNTGC	1 cut(s)	224
BstC8I	GCNNGC	2 cut(s)	343, 347
BstDEI	CTNAG	4 cut(s)	63, 285, 350, 363
BstFNI	CGCG	1 cut(s)	756
BstH2I	RGCGCY	1 cut(s)	493
BstHHI	GCGC	2 cut(s)	492, 859
BstMAI	GTCTC	2 cut(s)	776, 880
BstMWI	GCNNNNNNNGC	2 cut(s)	224, 351
BstSCI	CCNGG	2 cut(s)	354, 724
BstSFI	CTRYAG	1 cut(s)	648
BstUI	CGCG	1 cut(s)	756
BstV1I	GCAGC	2 cut(s)	230, 688
BstXI	CCANNNNNNTGG	1 cut(s)	596
BsuRI	GGCC	2 cut(s)	576, 732
BtsI	GCAGTG	1 cut(s)	688
BtsIMutI	CAGTG	4 cut(s)	227, 429, 567, 688
Cac8I	GCNNGC	2 cut(s)	343, 347
CfoI	GCGC	2 cut(s)	492, 859
Cfr13I	GGNCC	3 cut(s)	308, 575, 731
Csp6I	GTAC	2 cut(s)	496, 661
CviQI	GTAC	2 cut(s)	496, 661
DdeI	CTNAG	4 cut(s)	63, 285, 350, 363
DrdI	GACNNNNNNGTC	1 cut(s)	73
DseDI	GACNNNNNNGTC	1 cut(s)	73
Eam1104I	CTCTTC	2 cut(s)	44, 504
EarI	CTCTTC	2 cut(s)	44, 504
Eco130I	CCWWGG	2 cut(s)	183, 774
Eco47I	GGWCC	1 cut(s)	308
Eco47III	AGCGCT	1 cut(s)	491
EcoT14I	CCWWGG	2 cut(s)	183, 774
ErhI	CCWWGG	2 cut(s)	183, 774
Esp3I	CGTCTC	1 cut(s)	776
FaiI	YATR	8 cut(s)	201, 327, 374, 402, 471, 854, 867, 873
FalI	AAGNNNNNCTT	2 cut(s)	395, 427
FaqI	GGGAC	3 cut(s)	61, 88, 321
Fnu4HI	GCNGC	3 cut(s)	219, 702, 730
Fsp4HI	GCNGC	3 cut(s)	219, 702, 730
FspBI	CTAG	5 cut(s)	215, 264, 278, 447, 695
GlaI	GCGC	2 cut(s)	491, 858
GluI	GCNGC	3 cut(s)	219, 702, 730
GsaI	CCCAGC	1 cut(s)	208
HaeII	RGCGCY	1 cut(s)	493
HaeIII	GGCC	2 cut(s)	576, 732
HapII	CCGG	2 cut(s)	355, 726
HhaI	GCGC	2 cut(s)	492, 859
Hin6I	GCGC	2 cut(s)	490, 857
HinP1I	GCGC	2 cut(s)	490, 857
HindIII	AAGCTT	1 cut(s)	737
HinfI	GANTC	2 cut(s)	320, 758
HpaII	CCGG	2 cut(s)	355, 726
HphI	GGTGA	4 cut(s)	118, 370, 535, 844
Hpy166II	GTNNAC	1 cut(s)	800
Hpy188I	TCNGA	4 cut(s)	286, 370, 391, 628
Hpy188III	TCNNGA	1 cut(s)	719
Hpy8I	GTNNAC	1 cut(s)	800
HpyAV	CCTTC	4 cut(s)	63, 510, 551, 644
HpyCH4III	ACNGT	4 cut(s)	231, 433, 622, 804
HpyCH4IV	ACGT	1 cut(s)	68
HpyCH4V	TGCA	5 cut(s)	227, 275, 341, 581, 617
HpyF10VI	GCNNNNNNNGC	2 cut(s)	224, 351
HpyF3I	CTNAG	4 cut(s)	63, 285, 350, 363
HpySE526I	ACGT	1 cut(s)	68
HspAI	GCGC	2 cut(s)	490, 857
KpnI	GGTACC	1 cut(s)	499
LmnI	GCTCC	2 cut(s)	487, 560
Lsp1109I	GCAGC	2 cut(s)	230, 688
LweI	GCATC	4 cut(s)	290, 328, 448, 604
MaeI	CTAG	5 cut(s)	215, 264, 278, 447, 695
MaeII	ACGT	1 cut(s)	68
MaeIII	GTNAC	2 cut(s)	358, 541
MboII	GAAGA	6 cut(s)	9, 31, 48, 418, 521, 665
MluCI	AATT	4 cut(s)	94, 392, 421, 763
MmeI	TCCRAC	5 cut(s)	112, 348, 369, 577, 799
MroXI	GAANNNNTTC	2 cut(s)	9, 410
MseI	TTAA	2 cut(s)	300, 741
MslI	CAYNNNNRTG	1 cut(s)	533
MspI	CCGG	2 cut(s)	355, 726
MspR9I	CCNGG	2 cut(s)	356, 726
MvnI	CGCG	1 cut(s)	756
MwoI	GCNNNNNNNGC	2 cut(s)	224, 351
NciI	CCSGG	2 cut(s)	356, 726
NlaIV	GGNNCC	3 cut(s)	309, 497, 733
NmuCI	GTSAC	2 cut(s)	358, 541
PdmI	GAANNNNTTC	2 cut(s)	9, 410
PfeI	GAWTC	2 cut(s)	320, 758
PflFI	GACNNNGTC	1 cut(s)	364
PflMI	CCANNNNNTGG	2 cut(s)	189, 484
PkrI	GCNGC	3 cut(s)	220, 703, 731
PspFI	CCCAGC	1 cut(s)	204
PspN4I	GGNNCC	3 cut(s)	309, 497, 733
PspPI	GGNCC	3 cut(s)	308, 575, 731
PsyI	GACNNNGTC	1 cut(s)	364
RsaI	GTAC	2 cut(s)	497, 662
RsaNI	GTAC	2 cut(s)	496, 661
RseI	CAYNNNNRTG	1 cut(s)	533
SaqAI	TTAA	2 cut(s)	300, 741
SatI	GCNGC	3 cut(s)	219, 702, 730
Sau96I	GGNCC	3 cut(s)	308, 575, 731
ScrFI	CCNGG	2 cut(s)	356, 726
SfaNI	GCATC	4 cut(s)	290, 328, 448, 604
SfcI	CTRYAG	1 cut(s)	648
SinI	GGWCC	1 cut(s)	308
SmiMI	CAYNNNNRTG	1 cut(s)	533
SmlI	CTYRAG	2 cut(s)	130, 877
SmoI	CTYRAG	2 cut(s)	130, 877
Sse9I	AATT	4 cut(s)	94, 392, 421, 763
SsiI	CCGC	1 cut(s)	729
SspMI	CTAG	5 cut(s)	215, 264, 278, 447, 695
StyD4I	CCNGG	2 cut(s)	354, 724
StyI	CCWWGG	2 cut(s)	183, 774
TaaI	ACNGT	4 cut(s)	231, 433, 622, 804
TaiI	ACGT	1 cut(s)	71
TasI	AATT	4 cut(s)	94, 392, 421, 763
TatI	WGTACW	1 cut(s)	660
TauI	GCSGC	1 cut(s)	732
TfiI	GAWTC	2 cut(s)	320, 758
Tru1I	TTAA	2 cut(s)	300, 741
Tru9I	TTAA	2 cut(s)	300, 741
TscAI	CASTG	4 cut(s)	234, 436, 574, 688
TseFI	GTSAC	2 cut(s)	358, 541
TseI	GCWGC	2 cut(s)	218, 701
Tsp45I	GTSAC	2 cut(s)	358, 541
TspDTI	ATGAA	2 cut(s)	415, 681
TspGWI	ACGGA	1 cut(s)	800
TspRI	CASTG	4 cut(s)	234, 436, 574, 688
Tth111I	GACNNNGTC	1 cut(s)	364
Van91I	CCANNNNNTGG	2 cut(s)	189, 484
VpaK11BI	GGWCC	1 cut(s)	308
XmnI	GAANNNNTTC	2 cut(s)	9, 410
XspI	CTAG	5 cut(s)	215, 264, 278, 447, 695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.