AT1G55110

nucleic acid binding transcription factor zinc ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0006445
Physical Location & Seq
Reverse (-)
20560258 .. 20563269
3012 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G55110.3

Sequence Viewer

Length: 1368 bp
ATGATGATGAACAGAGACATATTATTTCATCAACAACAACAGCAACAAATGGAAGAGAACATGTCGAATCTAACATCAGCTTCAGGAGATCAAGCAAGTGTGTCTTCAGGAAACAGAACTGAAACTAGTGGCTCTAACATTAATCAGCATCATCAAGAACAGTGTTTTGTTCCACAATCGTCTCTTAAGAGGAAGAGAAATCAACCAGGAAATCCAGACCCAGAAGCAGAAGTGATGGCCTTATCACCAAAGACACTAATGGCGACAAACAGATTCATATGTGAGGTCTGCAACAAAGGTTTTCAAAGAGACCAAAACTTGCAACTTCACAAGAGAGGACATAATCTACCGTGGAAGCTTAAACAAAGATCAAACAAAGATGTGGTTAGGAAGAAAGTTTATGTTTGTCCAGAGCCAGGCTGTGTCCATCACCATCCATCGAGAGCTCTTGGTGACTTAACCGGAATCAAGAAGCATTTCTTCAGAAAACATGGCGAGAAGAAATGGAAATGTGAAAAGTGTTCCAAGAAATATGCGGTGCAATCAGATTGGAAGGCTCATGCTAAGACTTGTGGCACTAAAGAATACAAATGCGACTGTGGAACTCTCTTTTCTAGGAGGGATAGTTTCATAACTCATAGAGCATTTTGCGATGCATTAGCAGAAGAGAGTGCAAGAGCCATGCCAAACCCTATTATGATCCAAGCTTCAAATTCTCCTCATCATCATCATCATCAAACACAACAAAACATCGGTTTCTCTTCGTCATCCCAAAACATCATCAGCAACAGCAATCTCCATGGTCCTATGAAGCAAGAAGAATCACAGCATCACTATCAAAATATCCCTCCTTGGCTTATCTCATCAAACCCTAACCCTAATGGCAACAATGGTAATTTGTTCCCTCCTGTTGCTTCTTCTGTGAATACCGGGAGGTCCAGCTTTCCCCACCCATCGCCGGCTATGTCAGCCACAGCTTTGCTCCAGAAAGCAGCTCAAATGGGTTCTACGAAGTCAACAACTCCAGAGGAAGAAGAGAGGTCTTCGAGGTCAAGCTATAATAACTTGATCACGACTACAATGGCTGCTATGATGACTTCACCACCAGAACCTGGCTTCGGATTTCAAGACTATTACATGATGAATCATCAACATCACGGTGGAGGAGAAGCTTTCAACGGTGGTTTTGTCCCCGGAGAAGAGAAGAACGACGTCGTGGACGACGGTGGAGGAGAGACGAGAGATTTCTTGGGGCTAAGGTCGTTAATGTCGCATAACGAGATTCTAAGTTTCGCGAATAATCTTGGCAACTGTCTCAACACTTCTGCTACAGAGCAACAACAACAACAACATAGCCACCAAGATTAA

Protein Analysis

455

Amino Acids

50.9

Weight (kDa)

8.52

Isoelectric Point (pI)

64.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2H2-2nd_BIRD-IDD PF22996 130 - 164 5.1e-21 BIRD-IDD transcription factor, second C2H2 zinc finger
C2CH-3rd_BIRD-IDD PF22995 168 - 192 1.7e-14 BIRD-IDD transcription factor, third C2HC zinc finger
C2CH-4th_BIRD-IDD PF22992 195 - 232 8.9e-25 BIRD-IDD transcription factor, fourth C2HC zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1215
AccB7I CCANNNNNTGG 1 cut(s) 1112
AccII CGCG 1 cut(s) 1295
AciI CCGC 1 cut(s) 536
AclWI GGATC 1 cut(s) 694
AcsI RAATTY 1 cut(s) 712
AcuI CTGAAG 3 cut(s) 66, 90, 466
AcyI GRCGYC 1 cut(s) 1212
AfiI CCNNNNNNNGG 4 cut(s) 416, 958, 1112, 1118
AflII CTTAAG 1 cut(s) 185
AflIII ACRYGT 1 cut(s) 60
AgsI TTSAA 4 cut(s) 305, 711, 1127, 1177
AhlI ACTAGT 1 cut(s) 125
AjnI CCWGG 3 cut(s) 205, 415, 1111
AluBI AGCT 9 cut(s) 80, 358, 446, 707, 942, 977, 995, 1056, 1172
AluI AGCT 9 cut(s) 80, 358, 446, 707, 942, 977, 995, 1056, 1172
Alw21I GWGCWC 1 cut(s) 448
Alw26I GTCTC 5 cut(s) 9, 186, 303, 1229, 1319
AlwI GGATC 1 cut(s) 694
AlwNI CAGNNNCTG 1 cut(s) 1112
AoxI GGCC 1 cut(s) 237
ApeKI GCWGC 2 cut(s) 992, 1085
ApoI RAATTY 1 cut(s) 712
AseI ATTAAT 1 cut(s) 141
Asp700I GAANNNNTTC 1 cut(s) 476
AspS9I GGNCC 2 cut(s) 803, 936
AsuC2I CCSGG 2 cut(s) 931, 1194
AsuHPI GGTGA 4 cut(s) 237, 422, 464, 1092
AvaII GGWCC 2 cut(s) 803, 936
BanII GRGCYC 1 cut(s) 448
BbsI GAAGAC 2 cut(s) 96, 1035
Bbv12I GWGCWC 1 cut(s) 448
BbvI GCAGC 2 cut(s) 1004, 1072
BccI CCATC 5 cut(s) 229, 435, 441, 445, 961
BciT130I CCWGG 3 cut(s) 207, 417, 1113
BclI TGATCA 1 cut(s) 1068
BcnI CCSGG 2 cut(s) 931, 1194
BcoDI GTCTC 5 cut(s) 9, 186, 303, 1229, 1319
BcuI ACTAGT 1 cut(s) 125
BfaI CTAG 2 cut(s) 126, 615
BfmI CTRYAG 1 cut(s) 1329
BfrI CTTAAG 1 cut(s) 185
BisI GCNGC 2 cut(s) 993, 1086
BlsI GCNGC 2 cut(s) 994, 1087
Bme1390I CCNGG 5 cut(s) 207, 417, 931, 1113, 1194
Bme18I GGWCC 2 cut(s) 803, 936
BmgT120I GGNCC 2 cut(s) 803, 936
BmrFI CCNGG 5 cut(s) 207, 417, 931, 1113, 1194
BmsI GCATC 3 cut(s) 157, 643, 838
BpiI GAAGAC 2 cut(s) 96, 1035
BpmI CTGGAG 2 cut(s) 968, 1008
Bpu10I CCTNAGC 1 cut(s) 1256
BpuMI CCSGG 2 cut(s) 931, 1194
BsaHI GRCGYC 1 cut(s) 1212
BsaI GGTCTC 1 cut(s) 303
BsaJI CCNNGG 4 cut(s) 350, 799, 851, 1192
BsaWI WCCGGW 1 cut(s) 461
BsaXI ACNNNNNCTCC 2 cut(s) 610, 640
Bsc4I CCNNNNNNNGG 4 cut(s) 416, 958, 1112, 1118
Bse118I RCCGGY 1 cut(s) 958
BseBI CCWGG 3 cut(s) 207, 417, 1113
BseDI CCNNGG 4 cut(s) 350, 799, 851, 1192
BseGI GGATG 2 cut(s) 433, 767
BseLI CCNNNNNNNGG 4 cut(s) 416, 958, 1112, 1118
BseRI GAGGAG 3 cut(s) 708, 1179, 1245
BseXI GCAGC 2 cut(s) 1004, 1072
Bsh1236I CGCG 1 cut(s) 1295
BshFI GGCC 1 cut(s) 239
BsiHKAI GWGCWC 1 cut(s) 448
BsiSI CCGG 4 cut(s) 462, 930, 959, 1194
BslFI GGGAC 1 cut(s) 1175
BslI CCNNNNNNNGG 4 cut(s) 416, 958, 1112, 1118
BsmAI GTCTC 5 cut(s) 9, 186, 303, 1229, 1319
BsmBI CGTCTC 2 cut(s) 186, 1229
BsmFI GGGAC 1 cut(s) 1175
BsnI GGCC 1 cut(s) 239
Bso31I GGTCTC 1 cut(s) 303
Bsp1286I GDGCHC 1 cut(s) 448
Bsp143I GATC 4 cut(s) 88, 368, 699, 1068
Bsp19I CCATGG 1 cut(s) 799
Bsp68I TCGCGA 1 cut(s) 1295
BspACI CCGC 1 cut(s) 536
BspANI GGCC 1 cut(s) 239
BspFNI CGCG 1 cut(s) 1295
BspPI GGATC 1 cut(s) 694
BspTI CTTAAG 1 cut(s) 185
BspTNI GGTCTC 1 cut(s) 303
BsrFI RCCGGY 1 cut(s) 958
BssAI RCCGGY 1 cut(s) 958
BssECI CCNNGG 4 cut(s) 350, 799, 851, 1192
BssMI GATC 4 cut(s) 88, 368, 699, 1068
BssNI GRCGYC 1 cut(s) 1212
BssT1I CCWWGG 2 cut(s) 799, 851
Bst2UI CCWGG 3 cut(s) 207, 417, 1113
Bst4CI ACNGT 7 cut(s) 162, 351, 599, 1160, 1181, 1226, 1313
Bst6I CTCTTC 6 cut(s) 48, 188, 660, 766, 1029, 1194
BstACI GRCGYC 1 cut(s) 1212
BstAFI CTTAAG 1 cut(s) 185
BstC8I GCNNGC 1 cut(s) 960
BstDEI CTNAG 3 cut(s) 564, 1256, 1286
BstDSI CCRYGG 2 cut(s) 350, 799
BstF5I GGATG 2 cut(s) 433, 767
BstFNI CGCG 1 cut(s) 1295
BstKTI GATC 4 cut(s) 91, 371, 702, 1071
BstMAI GTCTC 5 cut(s) 9, 186, 303, 1229, 1319
BstMBI GATC 4 cut(s) 88, 368, 699, 1068
BstMWI GCNNNNNNNGC 1 cut(s) 968
BstNI CCWGG 3 cut(s) 207, 417, 1113
BstNSI RCATGY 1 cut(s) 64
BstSCI CCNGG 5 cut(s) 205, 415, 929, 1111, 1192
BstSFI CTRYAG 1 cut(s) 1329
BstUI CGCG 1 cut(s) 1295
BstV1I GCAGC 2 cut(s) 1004, 1072
BstV2I GAAGAC 2 cut(s) 96, 1035
BsuRI GGCC 1 cut(s) 239
BtgI CCRYGG 2 cut(s) 350, 799
BtgZI GCGATG 2 cut(s) 666, 939
BtsCI GGATG 2 cut(s) 433, 767
BtsIMutI CAGTG 1 cut(s) 167
BtuMI TCGCGA 1 cut(s) 1295
Cac8I GCNNGC 1 cut(s) 960
CaiI CAGNNNCTG 1 cut(s) 1112
Cfr10I RCCGGY 1 cut(s) 958
Cfr13I GGNCC 2 cut(s) 803, 936
CviAII CATG 6 cut(s) 61, 491, 560, 682, 800, 1138
DdeI CTNAG 3 cut(s) 564, 1256, 1286
DpnI GATC 4 cut(s) 90, 370, 701, 1070
DpnII GATC 4 cut(s) 88, 368, 699, 1068
Eam1104I CTCTTC 6 cut(s) 48, 188, 660, 766, 1029, 1194
EarI CTCTTC 6 cut(s) 48, 188, 660, 766, 1029, 1194
Ecl136II GAGCTC 1 cut(s) 446
Eco130I CCWWGG 2 cut(s) 799, 851
Eco24I GRGCYC 1 cut(s) 448
Eco31I GGTCTC 1 cut(s) 303
Eco47I GGWCC 2 cut(s) 803, 936
Eco53kI GAGCTC 1 cut(s) 446
Eco57I CTGAAG 3 cut(s) 66, 90, 466
EcoICRI GAGCTC 1 cut(s) 446
EcoRII CCWGG 3 cut(s) 205, 415, 1111
EcoT14I CCWWGG 2 cut(s) 799, 851
EcoT22I ATGCAT 1 cut(s) 658
EcoT38I GRGCYC 1 cut(s) 448
ErhI CCWWGG 2 cut(s) 799, 851
Esp3I CGTCTC 2 cut(s) 186, 1229
FaeI CATG 6 cut(s) 64, 494, 563, 685, 803, 1141
FalI AAGNNNNNCTT 4 cut(s) 88, 120, 464, 496
FaqI GGGAC 1 cut(s) 1175
FatI CATG 6 cut(s) 60, 490, 559, 681, 799, 1137
FauNDI CATATG 1 cut(s) 278
FbaI TGATCA 1 cut(s) 1068
Fnu4HI GCNGC 2 cut(s) 993, 1086
FokI GGATG 2 cut(s) 420, 754
FriOI GRGCYC 1 cut(s) 448
Fsp4HI GCNGC 2 cut(s) 993, 1086
FspBI CTAG 2 cut(s) 126, 615
GluI GCNGC 2 cut(s) 993, 1086
GsuI CTGGAG 2 cut(s) 968, 1008
HaeIII GGCC 1 cut(s) 239
HapII CCGG 4 cut(s) 462, 930, 959, 1194
Hin1I GRCGYC 1 cut(s) 1212
Hin1II CATG 6 cut(s) 64, 494, 563, 685, 803, 1141
HincII GTYRAC 1 cut(s) 1017
HindII GTYRAC 1 cut(s) 1017
HindIII AAGCTT 3 cut(s) 356, 705, 1170
HinfI GANTC 6 cut(s) 67, 273, 465, 821, 1144, 1282
HpaII CCGG 4 cut(s) 462, 930, 959, 1194
HphI GGTGA 4 cut(s) 237, 422, 464, 1092
Hpy166II GTNNAC 2 cut(s) 1017, 1219
Hpy188I TCNGA 3 cut(s) 485, 547, 1121
Hpy8I GTNNAC 2 cut(s) 1017, 1219
Hpy99I CGWCG 3 cut(s) 1214, 1217, 1226
HpyAV CCTTC 1 cut(s) 547
HpyCH4III ACNGT 7 cut(s) 162, 351, 599, 1160, 1181, 1226, 1313
HpyCH4IV ACGT 1 cut(s) 1212
HpyCH4V TGCA 5 cut(s) 291, 322, 541, 656, 674
HpyF10VI GCNNNNNNNGC 1 cut(s) 968
HpyF3I CTNAG 3 cut(s) 564, 1256, 1286
HpySE526I ACGT 1 cut(s) 1212
Hsp92I GRCGYC 1 cut(s) 1212
Hsp92II CATG 6 cut(s) 64, 494, 563, 685, 803, 1141
KroI GCCGGC 1 cut(s) 958
KroNI GCCGGC 1 cut(s) 960
Ksp22I TGATCA 1 cut(s) 1068
Kzo9I GATC 4 cut(s) 88, 368, 699, 1068
LmnI GCTCC 1 cut(s) 987
Lsp1109I GCAGC 2 cut(s) 1004, 1072
LweI GCATC 3 cut(s) 157, 643, 838
MaeI CTAG 2 cut(s) 126, 615
MaeII ACGT 1 cut(s) 1212
MaeIII GTNAC 1 cut(s) 452
MalI GATC 4 cut(s) 90, 370, 701, 1070
MboI GATC 4 cut(s) 88, 368, 699, 1068
MhlI GDGCHC 1 cut(s) 448
MluCI AATT 2 cut(s) 712, 895
Mph1103I ATGCAT 1 cut(s) 658
MroNI GCCGGC 1 cut(s) 958
MroXI GAANNNNTTC 1 cut(s) 476
MseI TTAA 6 cut(s) 141, 186, 360, 458, 1265, 1366
MslI CAYNNNNRTG 1 cut(s) 1158
MspCI CTTAAG 1 cut(s) 185
MspI CCGG 4 cut(s) 462, 930, 959, 1194
MspR9I CCNGG 5 cut(s) 207, 417, 931, 1113, 1194
MvaI CCWGG 3 cut(s) 207, 417, 1113
MvnI CGCG 1 cut(s) 1295
MwoI GCNNNNNNNGC 1 cut(s) 968
NaeI GCCGGC 1 cut(s) 960
NciI CCSGG 2 cut(s) 931, 1194
NcoI CCATGG 1 cut(s) 799
NdeI CATATG 1 cut(s) 278
NdeII GATC 4 cut(s) 88, 368, 699, 1068
NgoMIV GCCGGC 1 cut(s) 958
NlaIII CATG 6 cut(s) 64, 494, 563, 685, 803, 1141
NmuCI GTSAC 1 cut(s) 452
NruI TCGCGA 1 cut(s) 1295
NsiI ATGCAT 1 cut(s) 658
NspI RCATGY 1 cut(s) 64
PciI ACATGT 1 cut(s) 60
PcsI WCGNNNNNNNCGW 1 cut(s) 1218
PdiI GCCGGC 1 cut(s) 960
PdmI GAANNNNTTC 1 cut(s) 476
PfeI GAWTC 6 cut(s) 67, 273, 465, 821, 1144, 1282
PflMI CCANNNNNTGG 1 cut(s) 1112
PkrI GCNGC 2 cut(s) 994, 1087
PscI ACATGT 1 cut(s) 60
PshBI ATTAAT 1 cut(s) 141
Psp124BI GAGCTC 1 cut(s) 448
Psp6I CCWGG 3 cut(s) 205, 415, 1111
PspGI CCWGG 3 cut(s) 205, 415, 1111
PspPI GGNCC 2 cut(s) 803, 936
PstNI CAGNNNCTG 1 cut(s) 1112
RruI TCGCGA 1 cut(s) 1295
RseI CAYNNNNRTG 1 cut(s) 1158
SacI GAGCTC 1 cut(s) 448
SaqAI TTAA 6 cut(s) 141, 186, 360, 458, 1265, 1366
SatI GCNGC 2 cut(s) 993, 1086
Sau3AI GATC 4 cut(s) 88, 368, 699, 1068
Sau96I GGNCC 2 cut(s) 803, 936
ScrFI CCNGG 5 cut(s) 207, 417, 931, 1113, 1194
SduI GDGCHC 1 cut(s) 448
SfaNI GCATC 3 cut(s) 157, 643, 838
SfcI CTRYAG 1 cut(s) 1329
SinI GGWCC 2 cut(s) 803, 936
SmiMI CAYNNNNRTG 1 cut(s) 1158
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
SpeI ACTAGT 1 cut(s) 125
Sse9I AATT 2 cut(s) 712, 895
SsiI CCGC 1 cut(s) 536
SspMI CTAG 2 cut(s) 126, 615
SstI GAGCTC 1 cut(s) 448
StyD4I CCNGG 5 cut(s) 205, 415, 929, 1111, 1192
StyI CCWWGG 2 cut(s) 799, 851
TaaI ACNGT 7 cut(s) 162, 351, 599, 1160, 1181, 1226, 1313
TaiI ACGT 1 cut(s) 1215
TaqI TCGA 3 cut(s) 65, 440, 1046
TasI AATT 2 cut(s) 712, 895
TfiI GAWTC 6 cut(s) 67, 273, 465, 821, 1144, 1282
Tru1I TTAA 6 cut(s) 141, 186, 360, 458, 1265, 1366
Tru9I TTAA 6 cut(s) 141, 186, 360, 458, 1265, 1366
TscAI CASTG 1 cut(s) 167
TseFI GTSAC 1 cut(s) 452
TseI GCWGC 2 cut(s) 992, 1085
Tsp45I GTSAC 1 cut(s) 452
TspDTI ATGAA 6 cut(s) 17, 23, 265, 619, 824, 1157
TspRI CASTG 1 cut(s) 167
Van91I CCANNNNNTGG 1 cut(s) 1112
Vha464I CTTAAG 1 cut(s) 185
VpaK11BI GGWCC 2 cut(s) 803, 936
VspI ATTAAT 1 cut(s) 141
XapI RAATTY 1 cut(s) 712
XceI RCATGY 1 cut(s) 64
XmnI GAANNNNTTC 1 cut(s) 476
XspI CTAG 2 cut(s) 126, 615
ZraI GACGTC 1 cut(s) 1213
Zsp2I ATGCAT 1 cut(s) 658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.