Rorug02G0381700

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0006445
Physical Location & Seq
Reverse (-)
48759721 .. 48762509
2789 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0381700.1

Sequence Viewer

Length: 363 bp
ATGGCCAAGAGAAGCGCCTCTCCTGAGTGGTTCCATTGCAACCCATTTACTGACATTCAGGGGATTCGACGTTCGATAAAATTCAAAAAACATCTTTGCAAGCAGTCTGCTGCTTCTATGGCAGGAATGACTTTAGGCTTTAGGTACATTCAAAGGCTGGTGGACCAATTCCCTCCTGTAAAAGCGTTTCATTTTGTCCTTGACCACACTGAGTGTGGATTAGAGAAGCTTGGTGGAGCAGAACAAGGTGAATTTCATCCACCCACGTCGCGAATGACCAATTATGTTGTGTTTAAATTCGGAGAGCTTACTAGGTCTTACAATGTCTTACTATCTTGGCTATCTGGGCTTCACTTCAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2_jaz zf-met

Protein Analysis

120

Amino Acids

13.74

Weight (kDa)

9.51

Isoelectric Point (pI)

44.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 271
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 80, 251, 296
AcuI CTGAAG 1 cut(s) 340
AdeI CACNNNGTG 1 cut(s) 213
AfaI GTAC 1 cut(s) 146
AgsI TTSAA 2 cut(s) 85, 152
AjiI CACGTC 1 cut(s) 267
AloI GAACNNNNNNTCC 2 cut(s) 55, 87
AluBI AGCT 3 cut(s) 229, 307, 360
AluI AGCT 3 cut(s) 229, 307, 360
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 110
ApoI RAATTY 3 cut(s) 80, 251, 296
AspLEI GCGC 1 cut(s) 17
AspS9I GGNCC 1 cut(s) 163
AsuHPI GGTGA 1 cut(s) 260
AvaII GGWCC 1 cut(s) 163
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 1 cut(s) 97
BfaI CTAG 2 cut(s) 312, 361
BfoI RGCGCY 1 cut(s) 18
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
Bme18I GGWCC 1 cut(s) 163
BmgBI CACGTC 1 cut(s) 267
BmgT120I GGNCC 1 cut(s) 163
BmiI GGNNCC 1 cut(s) 32
Bse3DI GCAATG 1 cut(s) 34
BseGI GGATG 1 cut(s) 256
BseMI GCAATG 1 cut(s) 34
BseMII CTCAG 2 cut(s) 15, 201
BseXI GCAGC 1 cut(s) 97
Bsh1236I CGCG 1 cut(s) 271
BshFI GGCC 1 cut(s) 5
BsnI GGCC 1 cut(s) 5
Bsp68I TCGCGA 1 cut(s) 271
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 16, 202
BspFNI CGCG 1 cut(s) 271
BspLI GGNNCC 1 cut(s) 32
BsrDI GCAATG 1 cut(s) 34
BstC8I GCNNGC 1 cut(s) 101
BstDEI CTNAG 2 cut(s) 24, 210
BstF5I GGATG 1 cut(s) 256
BstFNI CGCG 1 cut(s) 271
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 1 cut(s) 17
BstMWI GCNNNNNNNGC 2 cut(s) 119, 346
BstUI CGCG 1 cut(s) 271
BstV1I GCAGC 1 cut(s) 97
BsuRI GGCC 1 cut(s) 5
BtrI CACGTC 1 cut(s) 267
BtsCI GGATG 1 cut(s) 256
BtsIMutI CAGTG 1 cut(s) 207
BtuMI TCGCGA 1 cut(s) 271
Cac8I GCNNGC 1 cut(s) 101
CfoI GCGC 1 cut(s) 17
Cfr13I GGNCC 1 cut(s) 163
Csp6I GTAC 1 cut(s) 145
CviJI RGCY 8 cut(s) 5, 138, 157, 229, 307, 340, 349, 360
CviKI_1 RGCY 8 cut(s) 5, 138, 157, 229, 307, 340, 349, 360
CviQI GTAC 1 cut(s) 145
DdeI CTNAG 2 cut(s) 24, 210
DraI TTTAAA 1 cut(s) 295
DraIII CACNNNGTG 1 cut(s) 213
EaeI YGGCCR 1 cut(s) 3
Eco47I GGWCC 1 cut(s) 163
Eco57I CTGAAG 1 cut(s) 340
FaiI YATR 2 cut(s) 119, 285
Fnu4HI GCNGC 1 cut(s) 111
FokI GGATG 1 cut(s) 243
Fsp4HI GCNGC 1 cut(s) 111
FspBI CTAG 2 cut(s) 312, 361
GlaI GCGC 1 cut(s) 16
GluI GCNGC 1 cut(s) 111
HaeII RGCGCY 1 cut(s) 18
HaeIII GGCC 1 cut(s) 5
HhaI GCGC 1 cut(s) 17
Hin6I GCGC 1 cut(s) 15
HinP1I GCGC 1 cut(s) 15
HindIII AAGCTT 1 cut(s) 227
HinfI GANTC 1 cut(s) 64
HphI GGTGA 1 cut(s) 260
Hpy166II GTNNAC 1 cut(s) 163
Hpy188I TCNGA 1 cut(s) 302
Hpy188III TCNNGA 2 cut(s) 23, 270
Hpy8I GTNNAC 1 cut(s) 163
Hpy99I CGWCG 2 cut(s) 72, 271
HpyCH4IV ACGT 2 cut(s) 70, 266
HpyCH4V TGCA 2 cut(s) 39, 99
HpyF10VI GCNNNNNNNGC 2 cut(s) 119, 346
HpyF3I CTNAG 2 cut(s) 24, 210
HpySE526I ACGT 2 cut(s) 70, 266
HspAI GCGC 1 cut(s) 15
LmnI GCTCC 1 cut(s) 236
LpnPI CCDG 6 cut(s) 36, 44, 108, 143, 189, 330
Lsp1109I GCAGC 1 cut(s) 97
MaeI CTAG 2 cut(s) 312, 361
MaeII ACGT 2 cut(s) 70, 266
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 5 cut(s) 80, 167, 251, 280, 296
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 2 cut(s) 28, 183
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 294
Msp20I TGGCCA 1 cut(s) 5
MvnI CGCG 1 cut(s) 271
MwoI GCNNNNNNNGC 2 cut(s) 119, 346
NlaIV GGNNCC 1 cut(s) 32
NruI TCGCGA 1 cut(s) 271
PfeI GAWTC 1 cut(s) 64
PkrI GCNGC 1 cut(s) 112
PspN4I GGNNCC 1 cut(s) 32
PspPI GGNCC 1 cut(s) 163
RruI TCGCGA 1 cut(s) 271
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
SaqAI TTAA 1 cut(s) 294
SatI GCNGC 1 cut(s) 111
Sau96I GGNCC 1 cut(s) 163
SetI ASST 8 cut(s) 73, 146, 231, 250, 269, 309, 317, 362
SinI GGWCC 1 cut(s) 163
Sse9I AATT 5 cut(s) 80, 167, 251, 280, 296
SspMI CTAG 2 cut(s) 312, 361
TaiI ACGT 2 cut(s) 73, 269
TaqI TCGA 2 cut(s) 67, 74
TasI AATT 5 cut(s) 80, 167, 251, 280, 296
TfiI GAWTC 1 cut(s) 64
Tru1I TTAA 1 cut(s) 294
Tru9I TTAA 1 cut(s) 294
TscAI CASTG 1 cut(s) 214
TseI GCWGC 1 cut(s) 110
TspDTI ATGAA 2 cut(s) 179, 245
TspRI CASTG 1 cut(s) 214
VpaK11BI GGWCC 1 cut(s) 163
XapI RAATTY 3 cut(s) 80, 251, 296
XcmI CCANNNNNNNNNTGG 1 cut(s) 212
XspI CTAG 2 cut(s) 312, 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.