Rh2DG452700

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0006445
Physical Location & Seq
Reverse (-)
65552943 .. 65556114
3172 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG452700.1

Sequence Viewer

Length: 1137 bp
ATGATGAGCAAAAGAGAGCGTGTGAAAGTCAATACTGCTTCCGTAAAAAGCACTTTGCAGTTTTGTATATGGCATATTAATGGCCTTGTTTGCTTCTGTTTTGTCTCTTTAATTTTGGGGATTTTCATTTTCTTTCACAGAAGGGACAGTTTCATCACCCACAGAGCTTTCTGTGATGCTTTAGCAGAAGAGAGTGCAAGAGCCATAAACCCAACAACACTGCAAACCCTCTCTTCTCCTCCTCCTCTTCAGCCTCAGCCTCAAAATCATATGAACCTCATGGGTGGTGGTCCCCACATTAATTTCAACCCCCATGGCCATGACCTCCATGCATACAGTGCATTCATGAAGAAGGAGCAAAATGATCATCAGCAAATTAGCAGCTTCAGTTCCACCAACAGTCTCTTACCACCTTGGCTTGCTTCTGGCCCACCACCCAGTGCTACCTCTATCTTCTCCGGAAATCAGGATCATCATCACCATCATCATCACGATTTCCAGCAGAACCTGGAGTTGGGTCCAAACCCTAACCCTAGCTTGGGCCCCACTCTCCCTCAATTCCAGGTGCCTGGTGCTGCAGCAGCCTTGTCATCCCCACCTCACATGTCAGCCACTGCATTGCTGCAGAAGGCAGCTCAGATGGGAGCGACAATGAGCAGCAGCAGCACCTCCTCAGGCTCGGTCTCAGTGGCAGCTGGCGTCATGGCGCGGGCCCACCTGTCTGACTTCGGGGGTCAGGTGTCAGCTGCCGGCAACGGCATTGGTGGAGGAGCAGGAGGAGGTAGTGTTCATCATCAACAACAACAGCAGCAGCAAGCCAGCTCTCTTTTGCATGACATGATGAACTCTCTGTCTTCGGGTACTGGGTTTGAAGGGACCTCGTTCGAGGACGCCTTCGGTGGCATTTTGGGGAACTCGAAGAGCAAAGACGGGAGTCGGAGTGGCGGAGCTGACGAAAATGGTGTCGTTGGTGGTGGGGAAGGTTTGACCAGAGATTTCTTGGGGCTAAAAGCAATGTCGCACAGTGACATGATGCTCAATATCGCTGGTCTGGGAAACTGCGTAAGCAACAACAATAGTAGTTCGACCCGTGACTTGCAGAATCAAGTACCACAAAAACCTAATTGGCAGGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2_jaz zf-met

Protein Analysis

378

Amino Acids

39.9

Weight (kDa)

6.73

Isoelectric Point (pI)

47.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2CH-4th_BIRD-IDD PF22992 44 - 72 4.7e-14 BIRD-IDD transcription factor, fourth C2HC zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 565
AccII CGCG 1 cut(s) 709
AccIII TCCGGA 1 cut(s) 458
AciI CCGC 2 cut(s) 709, 945
AclWI GGATC 1 cut(s) 477
AcoI YGGCCR 1 cut(s) 316
AcuI CTGAAG 2 cut(s) 233, 370
AcyI GRCGYC 2 cut(s) 699, 891
AdeI CACNNNGTG 1 cut(s) 440
AfaI GTAC 2 cut(s) 862, 1110
AfiI CCNNNNNNNGG 3 cut(s) 514, 538, 539
AflIII ACRYGT 1 cut(s) 603
AgsI TTSAA 2 cut(s) 307, 872
AjnI CCWGG 3 cut(s) 507, 561, 568
AjuI GAANNNNNNNTTGG 2 cut(s) 497, 529
AloI GAACNNNNNNTCC 2 cut(s) 771, 803
AluBI AGCT 8 cut(s) 167, 384, 537, 635, 695, 746, 822, 950
AluI AGCT 8 cut(s) 167, 384, 537, 635, 695, 746, 822, 950
Alw26I GTCTC 3 cut(s) 109, 407, 688
AlwI GGATC 1 cut(s) 477
AlwNI CAGNNNCTG 2 cut(s) 508, 614
Aor13HI TCCGGA 1 cut(s) 458
AoxI GGCC 5 cut(s) 82, 316, 427, 541, 711
ApaI GGGCCC 2 cut(s) 545, 715
ArsI GACNNNNNNTTYG 2 cut(s) 948, 980
AseI ATTAAT 2 cut(s) 78, 300
AspLEI GCGC 1 cut(s) 709
AspS9I GGNCC 8 cut(s) 290, 428, 518, 541, 542, 711, 712, 876
AsuHPI GGTGA 2 cut(s) 148, 470
AvaII GGWCC 3 cut(s) 290, 518, 876
AxyI CCTNAGG 1 cut(s) 673
BaeGI GKGCMC 2 cut(s) 545, 715
BalI TGGCCA 1 cut(s) 318
BanI GGYRCC 1 cut(s) 565
BanII GRGCYC 2 cut(s) 545, 715
BbsI GAAGAC 1 cut(s) 846
BbvCI CCTCAGC 1 cut(s) 255
BccI CCATC 2 cut(s) 489, 634
BceAI ACGGC 1 cut(s) 772
BciT130I CCWGG 3 cut(s) 509, 563, 570
BclI TGATCA 1 cut(s) 364
BcoDI GTCTC 3 cut(s) 109, 407, 688
BfaI CTAG 1 cut(s) 534
BfmI CTRYAG 2 cut(s) 576, 623
Bme1390I CCNGG 3 cut(s) 509, 563, 570
Bme18I GGWCC 3 cut(s) 290, 518, 876
BmgT120I GGNCC 8 cut(s) 290, 428, 518, 541, 542, 711, 712, 876
BmiI GGNNCC 7 cut(s) 292, 519, 543, 544, 567, 713, 877
BmrFI CCNGG 3 cut(s) 509, 563, 570
BmrI ACTGGG 2 cut(s) 432, 873
BmsI GCATC 2 cut(s) 166, 1023
BmuI ACTGGG 2 cut(s) 432, 873
BoxI GACNNNNGTC 1 cut(s) 933
BpiI GAAGAC 1 cut(s) 846
BpmI CTGGAG 1 cut(s) 530
Bpu10I CCTNAGC 1 cut(s) 255
BsaBI GATNNNNATC 1 cut(s) 474
BsaHI GRCGYC 2 cut(s) 699, 891
BsaI GGTCTC 1 cut(s) 688
BsaJI CCNNGG 2 cut(s) 313, 413
BsaWI WCCGGW 1 cut(s) 458
BsaXI ACNNNNNCTCC 4 cut(s) 771, 801, 925, 955
Bsc4I CCNNNNNNNGG 3 cut(s) 514, 538, 539
Bse118I RCCGGY 1 cut(s) 749
Bse1I ACTGG 2 cut(s) 438, 868
Bse21I CCTNAGG 1 cut(s) 673
Bse3DI GCAATG 2 cut(s) 617, 1020
Bse8I GATNNNNATC 1 cut(s) 474
BseAI TCCGGA 1 cut(s) 458
BseBI CCWGG 3 cut(s) 509, 563, 570
BseDI CCNNGG 2 cut(s) 313, 413
BseGI GGATG 1 cut(s) 590
BseJI GATNNNNATC 1 cut(s) 474
BseLI CCNNNNNNNGG 3 cut(s) 514, 538, 539
BseMI GCAATG 2 cut(s) 617, 1020
BseMII CTCAG 4 cut(s) 269, 650, 687, 699
BseNI ACTGG 2 cut(s) 438, 868
BseRI GAGGAG 6 cut(s) 228, 231, 234, 661, 783, 792
BseSI GKGCMC 2 cut(s) 545, 715
Bsh1236I CGCG 1 cut(s) 709
BshFI GGCC 5 cut(s) 84, 318, 429, 543, 713
BshNI GGYRCC 1 cut(s) 565
BsiSI CCGG 2 cut(s) 459, 750
BslFI GGGAC 3 cut(s) 158, 276, 889
BslI CCNNNNNNNGG 3 cut(s) 514, 538, 539
BsmAI GTCTC 3 cut(s) 109, 407, 688
BsmFI GGGAC 3 cut(s) 158, 276, 889
BsmI GAATGC 1 cut(s) 341
BsnI GGCC 5 cut(s) 84, 318, 429, 543, 713
Bso31I GGTCTC 1 cut(s) 688
Bsp120I GGGCCC 2 cut(s) 541, 711
Bsp1286I GDGCHC 2 cut(s) 545, 715
Bsp13I TCCGGA 1 cut(s) 458
Bsp143I GATC 2 cut(s) 364, 469
Bsp19I CCATGG 1 cut(s) 313
BspACI CCGC 2 cut(s) 709, 945
BspANI GGCC 5 cut(s) 84, 318, 429, 543, 713
BspCNI CTCAG 4 cut(s) 268, 649, 686, 698
BspEI TCCGGA 1 cut(s) 458
BspFNI CGCG 1 cut(s) 709
BspHI TCATGA 1 cut(s) 345
BspLI GGNNCC 7 cut(s) 292, 519, 543, 544, 567, 713, 877
BspMAI CTGCAG 2 cut(s) 580, 627
BspPI GGATC 1 cut(s) 477
BspQI GCTCTTC 1 cut(s) 914
BspT107I GGYRCC 1 cut(s) 565
BspTNI GGTCTC 1 cut(s) 688
BsrDI GCAATG 2 cut(s) 617, 1020
BsrFI RCCGGY 1 cut(s) 749
BsrI ACTGG 2 cut(s) 438, 868
BssAI RCCGGY 1 cut(s) 749
BssECI CCNNGG 2 cut(s) 313, 413
BssMI GATC 2 cut(s) 364, 469
BssNI GRCGYC 2 cut(s) 699, 891
BssT1I CCWWGG 2 cut(s) 313, 413
Bst2UI CCWGG 3 cut(s) 509, 563, 570
Bst4CI ACNGT 4 cut(s) 149, 338, 401, 1025
Bst6I CTCTTC 4 cut(s) 183, 238, 252, 914
BstACI GRCGYC 2 cut(s) 699, 891
BstAPI GCANNNNNTGC 1 cut(s) 338
BstC8I GCNNGC 6 cut(s) 420, 697, 711, 751, 816, 820
BstDEI CTNAG 4 cut(s) 255, 636, 673, 685
BstDSI CCRYGG 1 cut(s) 313
BstF5I GGATG 1 cut(s) 590
BstFNI CGCG 1 cut(s) 709
BstHHI GCGC 1 cut(s) 709
BstKTI GATC 2 cut(s) 367, 472
BstMAI GTCTC 3 cut(s) 109, 407, 688
BstMBI GATC 2 cut(s) 364, 469
BstMWI GCNNNNNNNGC 4 cut(s) 90, 338, 581, 663
BstNI CCWGG 3 cut(s) 509, 563, 570
BstNSI RCATGY 1 cut(s) 607
BstPAI GACNNNNGTC 1 cut(s) 933
BstSCI CCNGG 3 cut(s) 507, 561, 568
BstSFI CTRYAG 2 cut(s) 576, 623
BstSLI GKGCMC 2 cut(s) 545, 715
BstUI CGCG 1 cut(s) 709
BstV2I GAAGAC 1 cut(s) 846
BstXI CCANNNNNNTGG 1 cut(s) 569
Bsu36I CCTNAGG 1 cut(s) 673
BsuRI GGCC 5 cut(s) 84, 318, 429, 543, 713
BtgI CCRYGG 1 cut(s) 313
BtsCI GGATG 1 cut(s) 590
BtsI GCAGTG 2 cut(s) 218, 612
BtsIMutI CAGTG 6 cut(s) 218, 343, 445, 612, 693, 1030
Cac8I GCNNGC 6 cut(s) 420, 697, 711, 751, 816, 820
CaiI CAGNNNCTG 2 cut(s) 508, 614
CciI TCATGA 1 cut(s) 345
CfoI GCGC 1 cut(s) 709
Cfr10I RCCGGY 1 cut(s) 749
Cfr13I GGNCC 8 cut(s) 290, 428, 518, 541, 542, 711, 712, 876
CseI GACGC 2 cut(s) 688, 899
Csp6I GTAC 2 cut(s) 861, 1109
CviQI GTAC 2 cut(s) 861, 1109
DdeI CTNAG 4 cut(s) 255, 636, 673, 685
DpnI GATC 2 cut(s) 366, 471
DpnII GATC 2 cut(s) 364, 469
DraIII CACNNNGTG 1 cut(s) 440
EaeI YGGCCR 1 cut(s) 316
Eam1104I CTCTTC 4 cut(s) 183, 238, 252, 914
EarI CTCTTC 4 cut(s) 183, 238, 252, 914
EciI GGCGGA 1 cut(s) 960
Eco130I CCWWGG 2 cut(s) 313, 413
Eco24I GRGCYC 2 cut(s) 545, 715
Eco31I GGTCTC 1 cut(s) 688
Eco47I GGWCC 3 cut(s) 290, 518, 876
Eco57I CTGAAG 2 cut(s) 233, 370
Eco81I CCTNAGG 1 cut(s) 673
EcoO109I RGGNCCY 2 cut(s) 542, 876
EcoRII CCWGG 3 cut(s) 507, 561, 568
EcoT14I CCWWGG 2 cut(s) 313, 413
EcoT22I ATGCAT 1 cut(s) 334
EcoT38I GRGCYC 2 cut(s) 545, 715
ErhI CCWWGG 2 cut(s) 313, 413
FaqI GGGAC 3 cut(s) 158, 276, 889
FauI CCCGC 1 cut(s) 702
FauNDI CATATG 1 cut(s) 270
FbaI TGATCA 1 cut(s) 364
FokI GGATG 1 cut(s) 577
FriOI GRGCYC 2 cut(s) 545, 715
FspBI CTAG 1 cut(s) 534
GlaI GCGC 1 cut(s) 708
GsuI CTGGAG 1 cut(s) 530
HaeIII GGCC 5 cut(s) 84, 318, 429, 543, 713
HapII CCGG 2 cut(s) 459, 750
HgaI GACGC 2 cut(s) 688, 899
HhaI GCGC 1 cut(s) 709
Hin1I GRCGYC 2 cut(s) 699, 891
Hin6I GCGC 1 cut(s) 707
HinP1I GCGC 1 cut(s) 707
HinfI GANTC 2 cut(s) 934, 1102
HpaII CCGG 2 cut(s) 459, 750
HphI GGTGA 2 cut(s) 148, 470
Hpy188I TCNGA 3 cut(s) 639, 724, 939
Hpy188III TCNNGA 4 cut(s) 346, 459, 467, 491
HpyAV CCTTC 6 cut(s) 135, 346, 622, 866, 904, 974
HpyCH4III ACNGT 4 cut(s) 149, 338, 401, 1025
HpyF10VI GCNNNNNNNGC 4 cut(s) 90, 338, 581, 663
HpyF3I CTNAG 4 cut(s) 255, 636, 673, 685
Hsp92I GRCGYC 2 cut(s) 699, 891
HspAI GCGC 1 cut(s) 707
Kpn2I TCCGGA 1 cut(s) 458
KroI GCCGGC 1 cut(s) 749
KroNI GCCGGC 1 cut(s) 751
Ksp22I TGATCA 1 cut(s) 364
Kzo9I GATC 2 cut(s) 364, 469
LguI GCTCTTC 1 cut(s) 914
LmnI GCTCC 4 cut(s) 355, 644, 770, 947
LweI GCATC 2 cut(s) 166, 1023
MaeI CTAG 1 cut(s) 534
MaeIII GTNAC 2 cut(s) 1025, 1091
MalI GATC 2 cut(s) 366, 471
MboI GATC 2 cut(s) 364, 469
MboII GAAGA 7 cut(s) 200, 225, 239, 361, 445, 846, 931
MhlI GDGCHC 2 cut(s) 545, 715
MlsI TGGCCA 1 cut(s) 318
MluCI AATT 5 cut(s) 111, 301, 375, 557, 1123
MluNI TGGCCA 1 cut(s) 318
MlyI GAGTC 1 cut(s) 943
MmeI TCCRAC 1 cut(s) 917
Mox20I TGGCCA 1 cut(s) 318
Mph1103I ATGCAT 1 cut(s) 334
MroI TCCGGA 1 cut(s) 458
MroNI GCCGGC 1 cut(s) 749
MscI TGGCCA 1 cut(s) 318
MseI TTAA 3 cut(s) 78, 110, 300
MslI CAYNNNNRTG 2 cut(s) 78, 318
Msp20I TGGCCA 1 cut(s) 318
MspA1I CMGCKG 2 cut(s) 695, 746
MspI CCGG 2 cut(s) 459, 750
MspR9I CCNGG 3 cut(s) 509, 563, 570
Mva1269I GAATGC 1 cut(s) 341
MvaI CCWGG 3 cut(s) 509, 563, 570
MvnI CGCG 1 cut(s) 709
MwoI GCNNNNNNNGC 4 cut(s) 90, 338, 581, 663
NaeI GCCGGC 1 cut(s) 751
NcoI CCATGG 1 cut(s) 313
NdeI CATATG 1 cut(s) 270
NdeII GATC 2 cut(s) 364, 469
NgoMIV GCCGGC 1 cut(s) 749
NlaIV GGNNCC 7 cut(s) 292, 519, 543, 544, 567, 713, 877
NmuCI GTSAC 2 cut(s) 1025, 1091
NsiI ATGCAT 1 cut(s) 334
NspI RCATGY 1 cut(s) 607
PagI TCATGA 1 cut(s) 345
PciI ACATGT 1 cut(s) 603
PciSI GCTCTTC 1 cut(s) 914
PctI GAATGC 1 cut(s) 341
PdiI GCCGGC 1 cut(s) 751
PfeI GAWTC 1 cut(s) 1102
PleI GAGTC 1 cut(s) 942
PpsI GAGTC 1 cut(s) 942
PpuMI RGGWCCY 1 cut(s) 876
PscI ACATGT 1 cut(s) 603
PshAI GACNNNNGTC 1 cut(s) 933
PshBI ATTAAT 2 cut(s) 78, 300
Psp5II RGGWCCY 1 cut(s) 876
Psp6I CCWGG 3 cut(s) 507, 561, 568
PspGI CCWGG 3 cut(s) 507, 561, 568
PspN4I GGNNCC 7 cut(s) 292, 519, 543, 544, 567, 713, 877
PspOMI GGGCCC 2 cut(s) 541, 711
PspPI GGNCC 8 cut(s) 290, 428, 518, 541, 542, 711, 712, 876
PspPPI RGGWCCY 1 cut(s) 876
PstI CTGCAG 2 cut(s) 580, 627
PstNI CAGNNNCTG 2 cut(s) 508, 614
PvuII CAGCTG 2 cut(s) 695, 746
RsaI GTAC 2 cut(s) 862, 1110
RsaNI GTAC 2 cut(s) 861, 1109
RseI CAYNNNNRTG 2 cut(s) 78, 318
SapI GCTCTTC 1 cut(s) 914
SaqAI TTAA 3 cut(s) 78, 110, 300
Sau3AI GATC 2 cut(s) 364, 469
Sau96I GGNCC 8 cut(s) 290, 428, 518, 541, 542, 711, 712, 876
SchI GAGTC 1 cut(s) 943
ScrFI CCNGG 3 cut(s) 509, 563, 570
SduI GDGCHC 2 cut(s) 545, 715
SfaNI GCATC 2 cut(s) 166, 1023
SfcI CTRYAG 2 cut(s) 576, 623
SinI GGWCC 3 cut(s) 290, 518, 876
SmiMI CAYNNNNRTG 2 cut(s) 78, 318
Sse9I AATT 5 cut(s) 111, 301, 375, 557, 1123
SsiI CCGC 2 cut(s) 709, 945
SspMI CTAG 1 cut(s) 534
StyD4I CCNGG 3 cut(s) 507, 561, 568
StyI CCWWGG 2 cut(s) 313, 413
TaaI ACNGT 4 cut(s) 149, 338, 401, 1025
TaqI TCGA 3 cut(s) 885, 917, 1085
TaqII GACCGA 1 cut(s) 670
TasI AATT 5 cut(s) 111, 301, 375, 557, 1123
TfiI GAWTC 1 cut(s) 1102
Tru1I TTAA 3 cut(s) 78, 110, 300
Tru9I TTAA 3 cut(s) 78, 110, 300
TscAI CASTG 6 cut(s) 225, 343, 445, 619, 693, 1030
TseFI GTSAC 2 cut(s) 1025, 1091
Tsp45I GTSAC 2 cut(s) 1025, 1091
TspDTI ATGAA 7 cut(s) 115, 142, 287, 334, 362, 779, 857
TspGWI ACGGA 1 cut(s) 31
TspRI CASTG 6 cut(s) 225, 343, 445, 619, 693, 1030
VpaK11BI GGWCC 3 cut(s) 290, 518, 876
VspI ATTAAT 2 cut(s) 78, 300
XceI RCATGY 1 cut(s) 607
XcmI CCANNNNNNNNNTGG 1 cut(s) 997
XspI CTAG 1 cut(s) 534
Zsp2I ATGCAT 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.