AT1G55580

Belongs to the GRAS family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
20763844 .. 20765823
1980 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G55580.1

Sequence Viewer

Length: 1338 bp
ATGCTTACTTCCTTCAAATCCTCTAGCTCCTCCTCCGAAGATGCCACCGCTACCACCACCGAGAATCCTCCTCCTTTGTGCATCGCCTCCTCCTCGGCCGCAACCTCCGCCTCACATCACCTCCGTCGTCTTCTTTTCACCGCTGCGAATTTCGTCTCCCAGTCAAACTTCACCGCCGCTCAAAACTTACTCTCAATCCTCTCCCTTAACTCTTCTCCTCACGGCGACTCCACCGAGCGACTTGTACACCTCTTCACTAAAGCCTTGTCCGTACGAATCAACCGTCAGCAACAAGATCAGACGGCTGAAACGGTTGCCACGTGGACGACGAACGAAATGACGATGAGTAACTCCACGGTGTTCACGAGCAGTGTATGCAAAGAACAGTTCTTGTTTCGAACCAAGAACAACAATTCTGACTTCGAGTCTTGTTACTATCTTTGGCTAAACCAACTAACGCCGTTTATTCGGTTCGGTCATTTAACGGCGAACCAAGCTATCCTCGACGCGACGGAGACAAACGATAACGGAGCTCTACATATACTTGATTTAGATATATCACAAGGACTTCAATGGCCTCCATTGATGCAAGCCCTAGCAGAGAGGTCATCAAACCCTAGCAGTCCACCTCCATCTCTCCGCATAACCGGATGCGGTCGAGATGTAACCGGATTAAACCGAACTGGAGACCGGTTAACCCGGTTCGCTGACTCTTTAGGTCTCCAATTCCAGTTTCACACGCTAGTGATCGTAGAAGAAGATCTCGCCGGACTTTTGCTACAGATCCGATTGTTAGCTCTCTCAGCCGTACAAGGAGAGACCATTGCCGTCAATTGTGTTCACTTCCTCCACAAAATATTTAACGACGATGGAGATATGATCGGTCACTTCTTGTCAGCGATCAAGAGCTTAAACTCTAGAATCGTTACAATGGCAGAGAGAGAAGCTAATCATGGAGATCACTCGTTCTTGAATAGATTCTCTGAGGCAGTGGATCATTACATGGCGATCTTTGATTCGTTGGAAGCGACGTTGCCGCCAAATAGCCGAGAGAGACTAACCCTAGAGCAACGGTGGTTCGGTAAGGAGATTTTGGATGTTGTGGCGGCGGAAGAGACGGAGAGAAAGCAAAGACATCGGAGGTTTGAGATTTGGGAAGAGATGATGAAGAGGTTTGGTTTCGTTAACGTTCCTATTGGAAGCTTTGCTTTGTCTCAAGCTAAGCTTCTTCTTAGACTTCATTATCCTTCAGAAGGTTATAATCTTCAGTTCCTTAACAATTCTTTGTTTCTTGGCTGGCAAAATCGTCCCCTCTTCTCCGTTTCGTCGTGGAAATGA

Protein Analysis

445

Amino Acids

50.01

Weight (kDa)

6.11

Isoelectric Point (pI)

49.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAS PF03514 41 - 445 1.8e-122 GRAS domain family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015917)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G55580
fragaria_vesca FvH4_3g41310
malus_domestica MD03G1045700.v1.1 MD11G1047900.v1.1
prunus_persica Prupe.6G037000_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0074111
rosa_laevigata RLG00000036456
rosa_multiflora Rmu_sc0000573.1_g000063
rosa_roxburghii Rroxscaffold_1G00007280
rosa_rugosa Rorug05G0429200
rosa_samantha Rh5AG487000 Rh5BG507300 Rh5CG530900 Rh5DG519700
rosa_wichuraiana Rw5G045210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1260
AccBSI CCGCTC 1 cut(s) 179
AccII CGCG 1 cut(s) 509
AclI AACGTT 1 cut(s) 1188
AclWI GGATC 2 cut(s) 778, 1002
AcoI YGGCCR 1 cut(s) 96
AcsI RAATTY 1 cut(s) 148
AcuI CTGAAG 2 cut(s) 1233, 1250
AcvI CACGTG 1 cut(s) 321
AfaI GTAC 3 cut(s) 246, 273, 810
AfiI CCNNNNNNNGG 1 cut(s) 1253
AgeI ACCGGT 1 cut(s) 690
AgsI TTSAA 3 cut(s) 16, 572, 973
AhdI GACNNNNNGTC 1 cut(s) 424
AjuI GAANNNNNNNTTGG 2 cut(s) 717, 749
AleI CACNNNNGTG 1 cut(s) 743
AluBI AGCT 9 cut(s) 27, 497, 533, 797, 909, 947, 1203, 1220, 1225
AluI AGCT 9 cut(s) 27, 497, 533, 797, 909, 947, 1203, 1220, 1225
Alw21I GWGCWC 1 cut(s) 535
Alw26I GTCTC 8 cut(s) 160, 509, 681, 725, 812, 1048, 1109, 1218
AlwI GGATC 2 cut(s) 778, 1002
AoxI GGCC 2 cut(s) 96, 575
ApeKI GCWGC 1 cut(s) 143
ApoI RAATTY 1 cut(s) 148
ArsI GACNNNNNNTTYG 2 cut(s) 268, 300
AsiGI ACCGGT 1 cut(s) 690
Asp700I GAANNNNTTC 1 cut(s) 977
AsuC2I CCSGG 1 cut(s) 700
AsuHPI GGTGA 3 cut(s) 110, 130, 163
AsuII TTCGAA 1 cut(s) 397
BanII GRGCYC 1 cut(s) 535
BauI CACGAG 1 cut(s) 364
BbrPI CACGTG 1 cut(s) 321
BbsI GAAGAC 1 cut(s) 122
Bbv12I GWGCWC 1 cut(s) 535
BbvI GCAGC 1 cut(s) 130
BccI CCATC 2 cut(s) 640, 863
BceAI ACGGC 6 cut(s) 238, 318, 445, 501, 791, 812
BcgI CGANNNNNNTGC 2 cut(s) 1118, 1152
BcnI CCSGG 1 cut(s) 700
BcoDI GTCTC 8 cut(s) 160, 509, 681, 725, 812, 1048, 1109, 1218
BfaI CTAG 6 cut(s) 24, 596, 618, 743, 918, 1064
BfmI CTRYAG 1 cut(s) 779
BglII AGATCT 1 cut(s) 760
BisI GCNGC 5 cut(s) 99, 144, 177, 1037, 1107
BlpI GCTNAGC 1 cut(s) 1221
BlsI GCNGC 5 cut(s) 100, 145, 178, 1038, 1108
Bme1390I CCNGG 1 cut(s) 700
BmeRI GACNNNNNGTC 1 cut(s) 424
BmrFI CCNGG 1 cut(s) 700
BmrI ACTGGG 1 cut(s) 154
BmsI GCATC 4 cut(s) 31, 90, 576, 641
BmuI ACTGGG 1 cut(s) 154
BpiI GAAGAC 1 cut(s) 122
BpmI CTGGAG 1 cut(s) 705
Bpu1102I GCTNAGC 1 cut(s) 1221
Bpu14I TTCGAA 1 cut(s) 397
BpuEI CTTGAG 1 cut(s) 1200
BpuMI CCSGG 1 cut(s) 700
BsaAI YACGTR 1 cut(s) 321
BsaI GGTCTC 3 cut(s) 681, 725, 812
BsaJI CCNNGG 2 cut(s) 93, 354
BsaWI WCCGGW 3 cut(s) 647, 668, 690
BsaXI ACNNNNNCTCC 4 cut(s) 105, 135, 212, 242
Bsc4I CCNNNNNNNGG 1 cut(s) 1253
Bse118I RCCGGY 1 cut(s) 690
Bse1I ACTGG 3 cut(s) 160, 688, 730
Bse3DI GCAATG 1 cut(s) 822
BseDI CCNNGG 2 cut(s) 93, 354
BseGI GGATG 2 cut(s) 656, 1102
BseLI CCNNNNNNNGG 1 cut(s) 1253
BseMI GCAATG 1 cut(s) 822
BseMII CTCAG 2 cut(s) 816, 975
BseNI ACTGG 3 cut(s) 160, 688, 730
BseRI GAGGAG 6 cut(s) 19, 22, 60, 79, 82, 207
BseX3I CGGCCG 1 cut(s) 96
BseXI GCAGC 1 cut(s) 130
Bsh1236I CGCG 1 cut(s) 509
Bsh1285I CGRYCG 2 cut(s) 99, 658
BshFI GGCC 2 cut(s) 98, 577
BshTI ACCGGT 1 cut(s) 690
BsiEI CGRYCG 2 cut(s) 99, 658
BsiHKAI GWGCWC 1 cut(s) 535
BsiSI CCGG 5 cut(s) 648, 669, 691, 700, 768
BsiWI CGTACG 1 cut(s) 271
BslFI GGGAC 1 cut(s) 1293
BslI CCNNNNNNNGG 1 cut(s) 1253
BsmAI GTCTC 8 cut(s) 160, 509, 681, 725, 812, 1048, 1109, 1218
BsmBI CGTCTC 2 cut(s) 160, 1109
BsmFI GGGAC 1 cut(s) 1293
BsnI GGCC 2 cut(s) 98, 577
Bso31I GGTCTC 3 cut(s) 681, 725, 812
Bsp119I TTCGAA 1 cut(s) 397
Bsp1286I GDGCHC 1 cut(s) 535
Bsp1407I TGTACA 1 cut(s) 244
Bsp143I GATC 9 cut(s) 295, 747, 760, 783, 879, 900, 958, 994, 1008
Bsp1720I GCTNAGC 1 cut(s) 1221
BspANI GGCC 2 cut(s) 98, 577
BspCNI CTCAG 2 cut(s) 815, 976
BspFNI CGCG 1 cut(s) 509
BspPI GGATC 2 cut(s) 778, 1002
BspT104I TTCGAA 1 cut(s) 397
BspTNI GGTCTC 3 cut(s) 681, 725, 812
BsrBI CCGCTC 1 cut(s) 179
BsrDI GCAATG 1 cut(s) 822
BsrFI RCCGGY 1 cut(s) 690
BsrGI TGTACA 1 cut(s) 244
BsrI ACTGG 3 cut(s) 160, 688, 730
BssAI RCCGGY 1 cut(s) 690
BssECI CCNNGG 2 cut(s) 93, 354
BssMI GATC 9 cut(s) 295, 747, 760, 783, 879, 900, 958, 994, 1008
BssSI CACGAG 1 cut(s) 364
Bst2BI CACGAG 1 cut(s) 364
Bst4CI ACNGT 5 cut(s) 284, 313, 358, 387, 1074
Bst6I CTCTTC 6 cut(s) 217, 257, 1107, 1152, 1163, 1319
BstAPI GCANNNNNTGC 1 cut(s) 375
BstAUI TGTACA 1 cut(s) 244
BstBAI YACGTR 1 cut(s) 321
BstBI TTCGAA 1 cut(s) 397
BstC8I GCNNGC 2 cut(s) 591, 1298
BstDEI CTNAG 4 cut(s) 802, 984, 1221, 1232
BstDSI CCRYGG 1 cut(s) 354
BstENI CCTNNNNNAGG 1 cut(s) 1251
BstF5I GGATG 2 cut(s) 656, 1102
BstFNI CGCG 1 cut(s) 509
BstKTI GATC 9 cut(s) 298, 750, 763, 786, 882, 903, 961, 997, 1011
BstMAI GTCTC 8 cut(s) 160, 509, 681, 725, 812, 1048, 1109, 1218
BstMBI GATC 9 cut(s) 295, 747, 760, 783, 879, 900, 958, 994, 1008
BstMCI CGRYCG 2 cut(s) 99, 658
BstMWI GCNNNNNNNGC 4 cut(s) 107, 375, 494, 803
BstSCI CCNGG 1 cut(s) 698
BstSFI CTRYAG 1 cut(s) 779
BstUI CGCG 1 cut(s) 509
BstV1I GCAGC 1 cut(s) 130
BstV2I GAAGAC 1 cut(s) 122
BstX2I RGATCY 2 cut(s) 760, 783
BstYI RGATCY 2 cut(s) 760, 783
BstZI CGGCCG 1 cut(s) 96
BsuRI GGCC 2 cut(s) 98, 577
BtgI CCRYGG 1 cut(s) 354
BtgZI GCGATG 1 cut(s) 67
BtsCI GGATG 2 cut(s) 656, 1102
BtsI GCAGTG 2 cut(s) 376, 996
BtsIMutI CAGTG 2 cut(s) 376, 996
Cac8I GCNNGC 2 cut(s) 591, 1298
Cfr10I RCCGGY 1 cut(s) 690
CseI GACGC 1 cut(s) 515
Csp6I GTAC 3 cut(s) 245, 272, 809
CspAI ACCGGT 1 cut(s) 690
CviAII CATG 2 cut(s) 953, 1003
CviQI GTAC 3 cut(s) 245, 272, 809
DdeI CTNAG 4 cut(s) 802, 984, 1221, 1232
DpnI GATC 9 cut(s) 297, 749, 762, 785, 881, 902, 960, 996, 1010
DpnII GATC 9 cut(s) 295, 747, 760, 783, 879, 900, 958, 994, 1008
DriI GACNNNNNGTC 1 cut(s) 424
EaeI YGGCCR 1 cut(s) 96
EagI CGGCCG 1 cut(s) 96
Eam1104I CTCTTC 6 cut(s) 217, 257, 1107, 1152, 1163, 1319
Eam1105I GACNNNNNGTC 1 cut(s) 424
EarI CTCTTC 6 cut(s) 217, 257, 1107, 1152, 1163, 1319
EciI GGCGGA 2 cut(s) 97, 1124
Ecl136II GAGCTC 1 cut(s) 533
EclXI CGGCCG 1 cut(s) 96
Eco24I GRGCYC 1 cut(s) 535
Eco31I GGTCTC 3 cut(s) 681, 725, 812
Eco52I CGGCCG 1 cut(s) 96
Eco53kI GAGCTC 1 cut(s) 533
Eco57I CTGAAG 2 cut(s) 1233, 1250
Eco72I CACGTG 1 cut(s) 321
EcoICRI GAGCTC 1 cut(s) 533
EcoNI CCTNNNNNAGG 1 cut(s) 1251
EcoT38I GRGCYC 1 cut(s) 535
Esp3I CGTCTC 2 cut(s) 160, 1109
FaeI CATG 2 cut(s) 956, 1006
FaiI YATR 9 cut(s) 376, 540, 542, 557, 644, 878, 954, 1004, 1260
FalI AAGNNNNNCTT 4 cut(s) 1192, 1224, 1209, 1241
FaqI GGGAC 1 cut(s) 1293
FatI CATG 2 cut(s) 952, 1002
Fnu4HI GCNGC 5 cut(s) 99, 144, 177, 1037, 1107
FokI GGATG 2 cut(s) 663, 1109
FriOI GRGCYC 1 cut(s) 535
Fsp4HI GCNGC 5 cut(s) 99, 144, 177, 1037, 1107
FspBI CTAG 6 cut(s) 24, 596, 618, 743, 918, 1064
GluI GCNGC 5 cut(s) 99, 144, 177, 1037, 1107
GsuI CTGGAG 1 cut(s) 705
HaeIII GGCC 2 cut(s) 98, 577
HapII CCGG 5 cut(s) 648, 669, 691, 700, 768
HgaI GACGC 1 cut(s) 515
Hin1II CATG 2 cut(s) 956, 1006
HincII GTYRAC 2 cut(s) 696, 1186
HindII GTYRAC 2 cut(s) 696, 1186
HindIII AAGCTT 2 cut(s) 1201, 1223
HinfI GANTC 8 cut(s) 64, 227, 276, 425, 710, 921, 978, 1016
HpaI GTTAAC 2 cut(s) 696, 1186
HpaII CCGG 5 cut(s) 648, 669, 691, 700, 768
HphI GGTGA 3 cut(s) 110, 130, 163
Hpy166II GTNNAC 7 cut(s) 247, 324, 363, 626, 696, 841, 1186
Hpy188I TCNGA 7 cut(s) 37, 300, 418, 788, 985, 1140, 1252
Hpy188III TCNNGA 5 cut(s) 364, 659, 904, 918, 970
Hpy8I GTNNAC 7 cut(s) 247, 324, 363, 626, 696, 841, 1186
Hpy99I CGWCG 7 cut(s) 129, 331, 509, 514, 869, 1033, 1330
HpyAV CCTTC 3 cut(s) 22, 1247, 1257
HpyCH4III ACNGT 5 cut(s) 284, 313, 358, 387, 1074
HpyCH4IV ACGT 3 cut(s) 320, 1031, 1188
HpyCH4V TGCA 3 cut(s) 81, 378, 589
HpyF10VI GCNNNNNNNGC 4 cut(s) 107, 375, 494, 803
HpyF3I CTNAG 4 cut(s) 802, 984, 1221, 1232
HpySE526I ACGT 3 cut(s) 320, 1031, 1188
Hsp92II CATG 2 cut(s) 956, 1006
KspAI GTTAAC 2 cut(s) 696, 1186
Kzo9I GATC 9 cut(s) 295, 747, 760, 783, 879, 900, 958, 994, 1008
LmnI GCTCC 2 cut(s) 32, 530
LpnPI CCDG 9 cut(s) 173, 661, 669, 682, 704, 713, 743, 781, 1282
Lsp1109I GCAGC 1 cut(s) 130
LweI GCATC 4 cut(s) 31, 90, 576, 641
MaeI CTAG 6 cut(s) 24, 596, 618, 743, 918, 1064
MaeII ACGT 3 cut(s) 320, 1031, 1188
MaeIII GTNAC 5 cut(s) 347, 431, 664, 884, 925
MalI GATC 9 cut(s) 297, 749, 762, 785, 881, 902, 960, 996, 1010
MbiI CCGCTC 1 cut(s) 179
MboI GATC 9 cut(s) 295, 747, 760, 783, 879, 900, 958, 994, 1008
MfeI CAATTG 1 cut(s) 832
MflI RGATCY 2 cut(s) 760, 783
MhlI GDGCHC 1 cut(s) 535
MluCI AATT 5 cut(s) 148, 412, 725, 832, 1279
MlyI GAGTC 3 cut(s) 221, 434, 704
MmeI TCCRAC 1 cut(s) 1002
MroXI GAANNNNTTC 1 cut(s) 977
MseI TTAA 8 cut(s) 207, 482, 674, 695, 861, 911, 1185, 1275
MslI CAYNNNNRTG 1 cut(s) 743
MspA1I CMGCKG 1 cut(s) 143
MspI CCGG 5 cut(s) 648, 669, 691, 700, 768
MspR9I CCNGG 1 cut(s) 700
MunI CAATTG 1 cut(s) 832
MvnI CGCG 1 cut(s) 509
MwoI GCNNNNNNNGC 4 cut(s) 107, 375, 494, 803
NciI CCSGG 1 cut(s) 700
NdeII GATC 9 cut(s) 295, 747, 760, 783, 879, 900, 958, 994, 1008
NlaIII CATG 2 cut(s) 956, 1006
NmeAIII GCCGAG 2 cut(s) 74, 1073
NmuCI GTSAC 1 cut(s) 884
NspV TTCGAA 1 cut(s) 397
OliI CACNNNNGTG 1 cut(s) 743
PcsI WCGNNNNNNNCGW 5 cut(s) 280, 317, 326, 362, 1025
PdmI GAANNNNTTC 1 cut(s) 977
PfeI GAWTC 5 cut(s) 64, 276, 921, 978, 1016
Pfl23II CGTACG 1 cut(s) 271
PinAI ACCGGT 1 cut(s) 690
PkrI GCNGC 5 cut(s) 100, 145, 178, 1038, 1108
PleI GAGTC 3 cut(s) 221, 433, 704
PmaCI CACGTG 1 cut(s) 321
PmlI CACGTG 1 cut(s) 321
PpsI GAGTC 3 cut(s) 221, 433, 704
Ppu21I YACGTR 1 cut(s) 321
PsiI TTATAA 1 cut(s) 1260
Psp124BI GAGCTC 1 cut(s) 535
Psp1406I AACGTT 1 cut(s) 1188
PspCI CACGTG 1 cut(s) 321
PspLI CGTACG 1 cut(s) 271
PsuI RGATCY 2 cut(s) 760, 783
RsaI GTAC 3 cut(s) 246, 273, 810
RsaNI GTAC 3 cut(s) 245, 272, 809
RseI CAYNNNNRTG 1 cut(s) 743
SacI GAGCTC 1 cut(s) 535
SaqAI TTAA 8 cut(s) 207, 482, 674, 695, 861, 911, 1185, 1275
SatI GCNGC 5 cut(s) 99, 144, 177, 1037, 1107
Sau3AI GATC 9 cut(s) 295, 747, 760, 783, 879, 900, 958, 994, 1008
SchI GAGTC 3 cut(s) 221, 434, 704
ScrFI CCNGG 1 cut(s) 700
SduI GDGCHC 1 cut(s) 535
SfaNI GCATC 4 cut(s) 31, 90, 576, 641
SfcI CTRYAG 1 cut(s) 779
SfuI TTCGAA 1 cut(s) 397
SmiMI CAYNNNNRTG 1 cut(s) 743
SmlI CTYRAG 1 cut(s) 1215
SmoI CTYRAG 1 cut(s) 1215
Sse9I AATT 5 cut(s) 148, 412, 725, 832, 1279
SspI AATATT 1 cut(s) 858
SspMI CTAG 6 cut(s) 24, 596, 618, 743, 918, 1064
SstI GAGCTC 1 cut(s) 535
StyD4I CCNGG 1 cut(s) 698
TaaI ACNGT 5 cut(s) 284, 313, 358, 387, 1074
TaiI ACGT 3 cut(s) 323, 1034, 1191
TaqI TCGA 4 cut(s) 397, 423, 504, 658
TaqII GACCGA 2 cut(s) 464, 872
TasI AATT 5 cut(s) 148, 412, 725, 832, 1279
TatI WGTACW 1 cut(s) 244
TauI GCSGC 4 cut(s) 101, 179, 1039, 1109
TfiI GAWTC 5 cut(s) 64, 276, 921, 978, 1016
Tru1I TTAA 8 cut(s) 207, 482, 674, 695, 861, 911, 1185, 1275
Tru9I TTAA 8 cut(s) 207, 482, 674, 695, 861, 911, 1185, 1275
TscAI CASTG 2 cut(s) 376, 996
TseFI GTSAC 1 cut(s) 884
TseI GCWGC 1 cut(s) 143
Tsp45I GTSAC 1 cut(s) 884
TspDTI ATGAA 2 cut(s) 1181, 1229
TspGWI ACGGA 6 cut(s) 113, 259, 527, 543, 1133, 1309
TspRI CASTG 2 cut(s) 376, 996
XagI CCTNNNNNAGG 1 cut(s) 1251
XapI RAATTY 1 cut(s) 148
XbaI TCTAGA 1 cut(s) 917
XmnI GAANNNNTTC 1 cut(s) 977
XspI CTAG 6 cut(s) 24, 596, 618, 743, 918, 1064
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.