Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0015917

Physical Location & Seq

Genomic Coordinates Forward (+)

80500062 .. 80502305

Gene Structure 2244 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG507300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1374 bp

ATGCTCATGGGTTCATTCAATTCTTCCCATCATCAAAGAATAGTACCTCAACAACAAGAAGACCAAGATCCAGAGATTCACCCAGATCTACAACTGTATAACCAGCAGCACCACCAGTACCAGTTTGCTCAGCAGCCATTGTTAATGTCACGCGGATTGACATCCCGGCAACTCCTCATCAGCTGCGCTGAGCTCATTTCTCAGCTCGACTTCTCCTCCGCTCGCCGCCTCATTTCCATTCTATCCTCCTCGAATTCCTCCCCTTACGGAGACTCCACCGAGAGACTAGTCCACCAGTTCGTTCGGGCCCTCTCTCTCCGCCTGCCTGCAGTGGAGGCGGCTCCACGAGAAATCGTGAGTGTTGCCGCCGCCACTGCATCATCCGCCTCCACCTCCACTTCCACCTCCAACACGTTGCTGGAGGTGGAGACGGAAGCAGAAGAGGAGGCGCTTCAGTCGTGCTACCTAACCCTAAACCAGATAACCCCATTCATCAGGTTCAGCCACTTGACGGCGAATCAAGCCATCCTTGAAGCCATAGACTCAACTCACCACGCCATCCACATCCTCGACTTTGACATCAAACACGGCGTCCAATGGCCACCGTTGATGCAGGCCCTCGCGGAGAGATCCTACGGCTCAAGCTCATCTCTTCACCACCCTGCTCCGATGCTCCGCATCACCGCCACCGGTCGCGATCTCACTCTCCTCCGCCGAACCGGCGAGCGCCTCCTCCGGTTCGCCCAGTCTCTCGGCCTCACCTTCCACTTCCGCCCCATCGTTCTCTTAAACGACGTCGCAATGATCGACTACCTCAACCCGGCATCGCTCGGTCTCTTCTCTGACGAAGCCCTCGCCGTCAACTGCGTCCTCTACCTCCACAGACTCCTCACGGACGACGCACGTGAACTCCACCTCTTTCTCGACAAGATCAGAGGCTTGAACCCGAAGATAGTAACAGTAGCCGAGCGAGAAGCCAATCACAATAGCCCCATGTTTCTCAACAGGTTTGTCGAGGCGGTGGACCACTACGGCGCCATTTTTGGCTCCTTGGAAGCTACCCTCCCGCCGAACAGCAGGGAGAGGCTGGCGGTGGAGCAGGTGTGGTTCGGAAGAGAGATTGCTGACGTGGCGGCGGCAGACGATGATCAAAGTAGAAAGCAGTTGAGGCATGAGAGATATGAGAATTGGGAGATGATGATGAGGAGGTCGGGGTTCTCGAATGTTCCGTTGAGTCCCTTCGCTCTTTCACAAGCGAAGCTTCTTCTCCGGCTTCACTACCCTTCCGAGGGTTACCAGCTTCACAGCCTCAAAGACTCGTTCTTCTTAGGTTGGATGAATCGTCCCCTTTTCTCAGTTTCTTCTTGGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001763 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009889 GO:0009933 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048367 GO:0048507 GO:0048532 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090506 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAS

Protein Analysis

457

Amino Acids

51.69

Weight (kDa)

6.08

Isoelectric Point (pI)

50.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GRAS	PF03514	56 - 456	1.1e-111	GRAS domain family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015917)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55580
fragaria_vesca	FvH4_3g41310
malus_domestica	MD03G1045700.v1.1 MD11G1047900.v1.1
prunus_persica	Prupe.6G037000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0074111
rosa_laevigata	RLG00000036456
rosa_multiflora	Rmu_sc0000573.1_g000063
rosa_roxburghii	Rroxscaffold_1G00007280
rosa_rugosa	Rorug05G0429200
rosa_samantha	Rh5AG487000 Rh5BG507300 Rh5CG530900 Rh5DG519700
rosa_wichuraiana	Rw5G045210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1090
AatII	GACGTC	1 cut(s)	798
Acc36I	ACCTGC	1 cut(s)	1090
AccB1I	GGYRCC	1 cut(s)	1034
AccBSI	CCGCTC	1 cut(s)	221
AccII	CGCG	3 cut(s)	153, 623, 696
AclWI	GGATC	2 cut(s)	62, 624
AcoI	YGGCCR	1 cut(s)	599
AcsI	RAATTY	1 cut(s)	253
AcuI	CTGAAG	1 cut(s)	437
AcvI	CACGTG	1 cut(s)	905
AcyI	GRCGYC	3 cut(s)	591, 795, 1035
AfaI	GTAC	2 cut(s)	45, 119
AfiI	CCNNNNNNNGG	4 cut(s)	511, 820, 1288, 1289
AflIII	ACRYGT	1 cut(s)	411
AgeI	ACCGGT	1 cut(s)	689
AgsI	TTSAA	3 cut(s)	19, 533, 943
AhlI	ACTAGT	1 cut(s)	286
AjiI	CACGTC	1 cut(s)	1129
AluBI	AGCT	7 cut(s)	183, 193, 205, 645, 1058, 1261, 1300
AluI	AGCT	7 cut(s)	183, 193, 205, 645, 1058, 1261, 1300
Alw21I	GWGCWC	1 cut(s)	195
Alw26I	GTCTC	5 cut(s)	264, 277, 422, 753, 839
AlwI	GGATC	2 cut(s)	62, 624
AoxI	GGCC	4 cut(s)	306, 599, 615, 754
ApaI	GGGCCC	1 cut(s)	310
ApeKI	GCWGC	3 cut(s)	106, 133, 183
ApoI	RAATTY	1 cut(s)	253
ArsI	GACNNNNNNTTYG	2 cut(s)	576, 608
AsiGI	ACCGGT	1 cut(s)	689
AspLEI	GCGC	4 cut(s)	188, 451, 729, 1037
AspS9I	GGNCC	4 cut(s)	306, 307, 616, 1024
AsuC2I	CCSGG	2 cut(s)	166, 821
AsuHPI	GGTGA	5 cut(s)	71, 542, 647, 673, 751
AvaII	GGWCC	1 cut(s)	1024
BaeGI	GKGCMC	1 cut(s)	310
BalI	TGGCCA	1 cut(s)	601
BanI	GGYRCC	1 cut(s)	1034
BanII	GRGCYC	2 cut(s)	195, 310
BauI	CACGAG	1 cut(s)	345
BbrPI	CACGTG	1 cut(s)	905
BbsI	GAAGAC	1 cut(s)	66
Bbv12I	GWGCWC	1 cut(s)	195
BbvI	GCAGC	3 cut(s)	118, 145, 170
BccI	CCATC	4 cut(s)	36, 533, 566, 785
BceAI	ACGGC	5 cut(s)	528, 604, 652, 842, 1048
BclI	TGATCA	1 cut(s)	1147
BcnI	CCSGG	2 cut(s)	166, 821
BcoDI	GTCTC	5 cut(s)	264, 277, 422, 753, 839
BcuI	ACTAGT	1 cut(s)	286
BfaI	CTAG	1 cut(s)	287
BfmI	CTRYAG	1 cut(s)	327
BfoI	RGCGCY	3 cut(s)	452, 730, 1038
BfuAI	ACCTGC	1 cut(s)	1090
BglI	GCCNNNNNGGC	1 cut(s)	720
BglII	AGATCT	1 cut(s)	85
BisI	GCNGC	9 cut(s)	107, 134, 184, 226, 339, 366, 369, 1134, 1137
BlpI	GCTNAGC	2 cut(s)	129, 189
BlsI	GCNGC	9 cut(s)	108, 135, 185, 227, 340, 367, 370, 1135, 1138
Bme1390I	CCNGG	2 cut(s)	166, 821
Bme18I	GGWCC	1 cut(s)	1024
BmgBI	CACGTC	1 cut(s)	1129
BmgT120I	GGNCC	4 cut(s)	306, 307, 616, 1024
BmiI	GGNNCC	4 cut(s)	308, 342, 1036, 1048
BmrFI	CCNGG	2 cut(s)	166, 821
BmrI	ACTGGG	1 cut(s)	739
BmsI	GCATC	5 cut(s)	386, 600, 660, 687, 833
BmuI	ACTGGG	1 cut(s)	739
BpiI	GAAGAC	1 cut(s)	66
BpmI	CTGGAG	1 cut(s)	440
Bpu1102I	GCTNAGC	2 cut(s)	129, 189
BpuEI	CTTGAG	1 cut(s)	625
BpuMI	CCSGG	2 cut(s)	166, 821
BsaAI	YACGTR	1 cut(s)	905
BsaBI	GATNNNNATC	1 cut(s)	160
BsaHI	GRCGYC	3 cut(s)	591, 795, 1035
BsaI	GGTCTC	1 cut(s)	839
BsaJI	CCNNGG	2 cut(s)	1050, 1287
BsaWI	WCCGGW	2 cut(s)	689, 735
BsaXI	ACNNNNNCTCC	8 cut(s)	200, 230, 257, 287, 894, 924, 1088, 1118
Bsc4I	CCNNNNNNNGG	4 cut(s)	511, 820, 1288, 1289
Bse118I	RCCGGY	2 cut(s)	689, 719
Bse1I	ACTGG	4 cut(s)	115, 121, 295, 745
Bse3DI	GCAATG	1 cut(s)	807
Bse8I	GATNNNNATC	1 cut(s)	160
BseDI	CCNNGG	2 cut(s)	1050, 1287
BseGI	GGATG	6 cut(s)	161, 380, 525, 558, 564, 1341
BseJI	GATNNNNATC	1 cut(s)	160
BseLI	CCNNNNNNNGG	4 cut(s)	511, 820, 1288, 1289
BseMI	GCAATG	1 cut(s)	807
BseMII	CTCAG	4 cut(s)	143, 180, 215, 1368
BseNI	ACTGG	4 cut(s)	115, 121, 295, 745
BseRI	GAGGAG	8 cut(s)	164, 205, 238, 458, 698, 722, 878, 1219
BseSI	GKGCMC	1 cut(s)	310
BseXI	GCAGC	3 cut(s)	118, 145, 170
Bsh1236I	CGCG	3 cut(s)	153, 623, 696
Bsh1285I	CGRYCG	1 cut(s)	694
BshFI	GGCC	4 cut(s)	308, 601, 617, 756
BshNI	GGYRCC	1 cut(s)	1034
BshTI	ACCGGT	1 cut(s)	689
BsiEI	CGRYCG	1 cut(s)	694
BsiHKAI	GWGCWC	1 cut(s)	195
BsiSI	CCGG	6 cut(s)	166, 690, 720, 736, 821, 1270
BslFI	GGGAC	2 cut(s)	1221, 1329
BslI	CCNNNNNNNGG	4 cut(s)	511, 820, 1288, 1289
BsmAI	GTCTC	5 cut(s)	264, 277, 422, 753, 839
BsmBI	CGTCTC	1 cut(s)	422
BsmFI	GGGAC	2 cut(s)	1221, 1329
BsnI	GGCC	4 cut(s)	308, 601, 617, 756
Bso31I	GGTCTC	1 cut(s)	839
Bsp120I	GGGCCC	1 cut(s)	306
Bsp1286I	GDGCHC	2 cut(s)	195, 310
Bsp143I	GATC	7 cut(s)	67, 85, 629, 697, 804, 930, 1147
Bsp1720I	GCTNAGC	2 cut(s)	129, 189
Bsp68I	TCGCGA	1 cut(s)	696
BspANI	GGCC	4 cut(s)	308, 601, 617, 756
BspCNI	CTCAG	4 cut(s)	142, 181, 214, 1367
BspFNI	CGCG	3 cut(s)	153, 623, 696
BspLI	GGNNCC	4 cut(s)	308, 342, 1036, 1048
BspMAI	CTGCAG	1 cut(s)	331
BspMI	ACCTGC	1 cut(s)	1090
BspPI	GGATC	2 cut(s)	62, 624
BspT107I	GGYRCC	1 cut(s)	1034
BspTNI	GGTCTC	1 cut(s)	839
BsrBI	CCGCTC	1 cut(s)	221
BsrDI	GCAATG	1 cut(s)	807
BsrFI	RCCGGY	2 cut(s)	689, 719
BsrI	ACTGG	4 cut(s)	115, 121, 295, 745
BssAI	RCCGGY	2 cut(s)	689, 719
BssECI	CCNNGG	2 cut(s)	1050, 1287
BssMI	GATC	7 cut(s)	67, 85, 629, 697, 804, 930, 1147
BssNI	GRCGYC	3 cut(s)	591, 795, 1035
BssSI	CACGAG	1 cut(s)	345
BssT1I	CCWWGG	1 cut(s)	1050
Bst2BI	CACGAG	1 cut(s)	345
Bst4CI	ACNGT	3 cut(s)	96, 606, 961
Bst6I	CTCTTC	4 cut(s)	435, 657, 842, 1108
BstACI	GRCGYC	3 cut(s)	591, 795, 1035
BstBAI	YACGTR	1 cut(s)	905
BstC8I	GCNNGC	6 cut(s)	223, 323, 327, 615, 725, 1089
BstDEI	CTNAG	5 cut(s)	129, 189, 201, 1327, 1354
BstEII	GGTNACC	1 cut(s)	1292
BstF5I	GGATG	6 cut(s)	161, 380, 525, 558, 564, 1341
BstFNI	CGCG	3 cut(s)	153, 623, 696
BstH2I	RGCGCY	3 cut(s)	452, 730, 1038
BstHHI	GCGC	4 cut(s)	188, 451, 729, 1037
BstKTI	GATC	7 cut(s)	70, 88, 632, 700, 807, 933, 1150
BstMAI	GTCTC	5 cut(s)	264, 277, 422, 753, 839
BstMBI	GATC	7 cut(s)	67, 85, 629, 697, 804, 930, 1147
BstMCI	CGRYCG	1 cut(s)	694
BstMWI	GCNNNNNNNGC	7 cut(s)	335, 374, 383, 521, 720, 1130, 1168
BstPI	GGTNACC	1 cut(s)	1292
BstSCI	CCNGG	2 cut(s)	164, 819
BstSFI	CTRYAG	1 cut(s)	327
BstSLI	GKGCMC	1 cut(s)	310
BstUI	CGCG	3 cut(s)	153, 623, 696
BstV1I	GCAGC	3 cut(s)	118, 145, 170
BstV2I	GAAGAC	1 cut(s)	66
BstX2I	RGATCY	3 cut(s)	67, 85, 629
BstYI	RGATCY	3 cut(s)	67, 85, 629
BsuRI	GGCC	4 cut(s)	308, 601, 617, 756
BtgZI	GCGATG	1 cut(s)	810
BtrI	CACGTC	1 cut(s)	1129
BtsCI	GGATG	6 cut(s)	161, 380, 525, 558, 564, 1341
BtsI	GCAGTG	2 cut(s)	336, 372
BtsIMutI	CAGTG	2 cut(s)	336, 372
BtuMI	TCGCGA	1 cut(s)	696
BveI	ACCTGC	1 cut(s)	1090
Cac8I	GCNNGC	6 cut(s)	223, 323, 327, 615, 725, 1089
CfoI	GCGC	4 cut(s)	188, 451, 729, 1037
Cfr10I	RCCGGY	2 cut(s)	689, 719
Cfr13I	GGNCC	4 cut(s)	306, 307, 616, 1024
CseI	GACGC	3 cut(s)	580, 856, 908
Csp6I	GTAC	2 cut(s)	44, 118
CspAI	ACCGGT	1 cut(s)	689
CviAII	CATG	3 cut(s)	7, 994, 1172
CviQI	GTAC	2 cut(s)	44, 118
DdeI	CTNAG	5 cut(s)	129, 189, 201, 1327, 1354
DinI	GGCGCC	1 cut(s)	1036
DpnI	GATC	7 cut(s)	69, 87, 631, 699, 806, 932, 1149
DpnII	GATC	7 cut(s)	67, 85, 629, 697, 804, 930, 1147
EaeI	YGGCCR	1 cut(s)	599
Eam1104I	CTCTTC	4 cut(s)	435, 657, 842, 1108
EarI	CTCTTC	4 cut(s)	435, 657, 842, 1108
EciI	GGCGGA	4 cut(s)	308, 373, 701, 761
Ecl136II	GAGCTC	1 cut(s)	193
Eco130I	CCWWGG	1 cut(s)	1050
Eco24I	GRGCYC	2 cut(s)	195, 310
Eco31I	GGTCTC	1 cut(s)	839
Eco47I	GGWCC	1 cut(s)	1024
Eco53kI	GAGCTC	1 cut(s)	193
Eco57I	CTGAAG	1 cut(s)	437
Eco72I	CACGTG	1 cut(s)	905
Eco91I	GGTNACC	1 cut(s)	1292
EcoICRI	GAGCTC	1 cut(s)	193
EcoO109I	RGGNCCY	2 cut(s)	307, 616
EcoO65I	GGTNACC	1 cut(s)	1292
EcoRI	GAATTC	1 cut(s)	253
EcoT14I	CCWWGG	1 cut(s)	1050
EcoT38I	GRGCYC	2 cut(s)	195, 310
EgeI	GGCGCC	1 cut(s)	1036
EheI	GGCGCC	1 cut(s)	1036
ErhI	CCWWGG	1 cut(s)	1050
Esp3I	CGTCTC	1 cut(s)	422
FaeI	CATG	3 cut(s)	10, 997, 1175
FaiI	YATR	6 cut(s)	8, 99, 539, 995, 1173, 1182
FalI	AAGNNNNNCTT	4 cut(s)	513, 545, 1245, 1277
FaqI	GGGAC	2 cut(s)	1221, 1329
FatI	CATG	3 cut(s)	6, 993, 1171
FauI	CCCGC	1 cut(s)	1074
FbaI	TGATCA	1 cut(s)	1147
Fnu4HI	GCNGC	9 cut(s)	107, 134, 184, 226, 339, 366, 369, 1134, 1137
FokI	GGATG	6 cut(s)	148, 367, 512, 545, 551, 1348
FriOI	GRGCYC	2 cut(s)	195, 310
Fsp4HI	GCNGC	9 cut(s)	107, 134, 184, 226, 339, 366, 369, 1134, 1137
FspBI	CTAG	1 cut(s)	287
GlaI	GCGC	4 cut(s)	187, 450, 728, 1036
GluI	GCNGC	9 cut(s)	107, 134, 184, 226, 339, 366, 369, 1134, 1137
GsuI	CTGGAG	1 cut(s)	440
HaeII	RGCGCY	3 cut(s)	452, 730, 1038
HaeIII	GGCC	4 cut(s)	308, 601, 617, 756
HapII	CCGG	6 cut(s)	166, 690, 720, 736, 821, 1270
HgaI	GACGC	3 cut(s)	580, 856, 908
HhaI	GCGC	4 cut(s)	188, 451, 729, 1037
Hin1I	GRCGYC	3 cut(s)	591, 795, 1035
Hin1II	CATG	3 cut(s)	10, 997, 1175
Hin6I	GCGC	4 cut(s)	186, 449, 727, 1035
HinP1I	GCGC	4 cut(s)	186, 449, 727, 1035
HincII	GTYRAC	1 cut(s)	862
HindII	GTYRAC	1 cut(s)	862
HindIII	AAGCTT	1 cut(s)	1259
HinfI	GANTC	8 cut(s)	76, 272, 517, 542, 885, 1234, 1316, 1339
HpaII	CCGG	6 cut(s)	166, 690, 720, 736, 821, 1270
HphI	GGTGA	5 cut(s)	71, 542, 647, 673, 751
Hpy166II	GTNNAC	4 cut(s)	292, 862, 908, 1024
Hpy188I	TCNGA	5 cut(s)	669, 844, 935, 1112, 1288
Hpy188III	TCNNGA	5 cut(s)	71, 355, 695, 923, 1219
Hpy8I	GTNNAC	4 cut(s)	292, 862, 908, 1024
Hpy99I	CGWCG	3 cut(s)	797, 800, 902
HpyAV	CCTTC	3 cut(s)	772, 1249, 1293
HpyCH4III	ACNGT	3 cut(s)	96, 606, 961
HpyCH4IV	ACGT	4 cut(s)	413, 795, 904, 1128
HpyCH4V	TGCA	3 cut(s)	329, 377, 613
HpyF10VI	GCNNNNNNNGC	7 cut(s)	335, 374, 383, 521, 720, 1130, 1168
HpyF3I	CTNAG	5 cut(s)	129, 189, 201, 1327, 1354
HpySE526I	ACGT	4 cut(s)	413, 795, 904, 1128
Hsp92I	GRCGYC	3 cut(s)	591, 795, 1035
Hsp92II	CATG	3 cut(s)	10, 997, 1175
HspAI	GCGC	4 cut(s)	186, 449, 727, 1035
KasI	GGCGCC	1 cut(s)	1034
Ksp22I	TGATCA	1 cut(s)	1147
Kzo9I	GATC	7 cut(s)	67, 85, 629, 697, 804, 930, 1147
LmnI	GCTCC	5 cut(s)	346, 670, 678, 1052, 1096
Lsp1109I	GCAGC	3 cut(s)	118, 145, 170
LweI	GCATC	5 cut(s)	386, 600, 660, 687, 833
MaeI	CTAG	1 cut(s)	287
MaeII	ACGT	4 cut(s)	413, 795, 904, 1128
MaeIII	GTNAC	3 cut(s)	147, 955, 1292
MalI	GATC	7 cut(s)	69, 87, 631, 699, 806, 932, 1149
MbiI	CCGCTC	1 cut(s)	221
MboI	GATC	7 cut(s)	67, 85, 629, 697, 804, 930, 1147
MflI	RGATCY	3 cut(s)	67, 85, 629
MhlI	GDGCHC	2 cut(s)	195, 310
MlsI	TGGCCA	1 cut(s)	601
MluCI	AATT	3 cut(s)	19, 253, 1186
MluNI	TGGCCA	1 cut(s)	601
Mly113I	GGCGCC	1 cut(s)	1035
MlyI	GAGTC	5 cut(s)	266, 536, 879, 1243, 1310
MmeI	TCCRAC	2 cut(s)	432, 1313
Mox20I	TGGCCA	1 cut(s)	601
MscI	TGGCCA	1 cut(s)	601
MseI	TTAA	2 cut(s)	143, 788
Msp20I	TGGCCA	1 cut(s)	601
MspA1I	CMGCKG	1 cut(s)	183
MspI	CCGG	6 cut(s)	166, 690, 720, 736, 821, 1270
MspR9I	CCNGG	2 cut(s)	166, 821
MvnI	CGCG	3 cut(s)	153, 623, 696
MwoI	GCNNNNNNNGC	7 cut(s)	335, 374, 383, 521, 720, 1130, 1168
NarI	GGCGCC	1 cut(s)	1035
NciI	CCSGG	2 cut(s)	166, 821
NdeII	GATC	7 cut(s)	67, 85, 629, 697, 804, 930, 1147
NlaIII	CATG	3 cut(s)	10, 997, 1175
NlaIV	GGNNCC	4 cut(s)	308, 342, 1036, 1048
NmeAIII	GCCGAG	2 cut(s)	732, 991
NmuCI	GTSAC	1 cut(s)	147
NruI	TCGCGA	1 cut(s)	696
PaqCI	CACCTGC	1 cut(s)	1090
PcsI	WCGNNNNNNNCGW	3 cut(s)	804, 1217, 1226
PfeI	GAWTC	3 cut(s)	76, 517, 1339
PinAI	ACCGGT	1 cut(s)	689
PkrI	GCNGC	9 cut(s)	108, 135, 185, 227, 340, 367, 370, 1135, 1138
PleI	GAGTC	5 cut(s)	266, 536, 879, 1242, 1310
PluTI	GGCGCC	1 cut(s)	1038
PmaCI	CACGTG	1 cut(s)	905
PmlI	CACGTG	1 cut(s)	905
PpsI	GAGTC	5 cut(s)	266, 536, 879, 1242, 1310
Ppu21I	YACGTR	1 cut(s)	905
Psp124BI	GAGCTC	1 cut(s)	195
PspCI	CACGTG	1 cut(s)	905
PspEI	GGTNACC	1 cut(s)	1292
PspN4I	GGNNCC	4 cut(s)	308, 342, 1036, 1048
PspOMI	GGGCCC	1 cut(s)	306
PspPI	GGNCC	4 cut(s)	306, 307, 616, 1024
PstI	CTGCAG	1 cut(s)	331
PsuI	RGATCY	3 cut(s)	67, 85, 629
PvuII	CAGCTG	1 cut(s)	183
RruI	TCGCGA	1 cut(s)	696
RsaI	GTAC	2 cut(s)	45, 119
RsaNI	GTAC	2 cut(s)	44, 118
SacI	GAGCTC	1 cut(s)	195
SaqAI	TTAA	2 cut(s)	143, 788
SatI	GCNGC	9 cut(s)	107, 134, 184, 226, 339, 366, 369, 1134, 1137
Sau3AI	GATC	7 cut(s)	67, 85, 629, 697, 804, 930, 1147
Sau96I	GGNCC	4 cut(s)	306, 307, 616, 1024
SchI	GAGTC	5 cut(s)	266, 536, 879, 1243, 1310
ScrFI	CCNGG	2 cut(s)	166, 821
SduI	GDGCHC	2 cut(s)	195, 310
SfaNI	GCATC	5 cut(s)	386, 600, 660, 687, 833
SfcI	CTRYAG	1 cut(s)	327
SfoI	GGCGCC	1 cut(s)	1036
SinI	GGWCC	1 cut(s)	1024
SmlI	CTYRAG	1 cut(s)	640
SmoI	CTYRAG	1 cut(s)	640
SpeI	ACTAGT	1 cut(s)	286
Sse9I	AATT	3 cut(s)	19, 253, 1186
SspDI	GGCGCC	1 cut(s)	1034
SspMI	CTAG	1 cut(s)	287
SstI	GAGCTC	1 cut(s)	195
StyD4I	CCNGG	2 cut(s)	164, 819
StyI	CCWWGG	1 cut(s)	1050
TaaI	ACNGT	3 cut(s)	96, 606, 961
TaiI	ACGT	4 cut(s)	416, 798, 907, 1131
TaqI	TCGA	7 cut(s)	207, 251, 570, 807, 924, 1014, 1220
TaqII	GACCGA	1 cut(s)	821
TasI	AATT	3 cut(s)	19, 253, 1186
TauI	GCSGC	6 cut(s)	228, 341, 368, 371, 1136, 1139
TfiI	GAWTC	3 cut(s)	76, 517, 1339
Tru1I	TTAA	2 cut(s)	143, 788
Tru9I	TTAA	2 cut(s)	143, 788
TscAI	CASTG	2 cut(s)	336, 379
TseFI	GTSAC	1 cut(s)	147
TseI	GCWGC	3 cut(s)	106, 133, 183
Tsp45I	GTSAC	1 cut(s)	147
TspDTI	ATGAA	2 cut(s)	481, 1352
TspGWI	ACGGA	4 cut(s)	282, 446, 908, 1218
TspRI	CASTG	2 cut(s)	336, 379
VpaK11BI	GGWCC	1 cut(s)	1024
XapI	RAATTY	1 cut(s)	253
XcmI	CCANNNNNNNNNTGG	1 cut(s)	415
XspI	CTAG	1 cut(s)	287
ZraI	GACGTC	1 cut(s)	796

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.