Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015509

Physical Location & Seq

Genomic Coordinates Reverse (-)

20802670 .. 20803449

Gene Structure 780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G55670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGCCACAAGCGCATCAGCTTTGCTCTCACCAACCACATTCTCCACTGCAATCTCCCACAAAAACCCTAACTCCATCTCATTCCATGGCCTTCGTCCCCTCCGTCTAGGTGGCTCCTCCTCCGCCCTACCCAAACTATCAACCACCGGGAGAAAATCCTCCTCCGCTGTCGTGAGAGCTGAGCTAAGCCCTTCCATCGTCATAAGTCTCAGCACAGGTCTCTCCCTCTTCCTCGGCCGTTTCGTCTTCTTCAACTTCCAGAGAGAGAACGTAGCAAAACAGGGCTTACCGGAGCAGAACGGAAAAACCCATTTCGAAGCTGGAGATGATCGTGCTAAGGAGTACGTCAGTCTCTTGAAATCGAACGATCCAATTGGATTCAACATTGTTGATGTTCTTGCTTGGGGTTCTATTGGACACATCGTTGCTTACTACATCTTGGCTACTTCCAGCAATGGATACGACCCAAGCTTCTTTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006740 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009507 GO:0009521 GO:0009522 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009767 GO:0009773 GO:0009780 GO:0009941 GO:0009987 GO:0010109 GO:0015979 GO:0016020 GO:0019222 GO:0019362 GO:0019637 GO:0019684 GO:0022900 GO:0030093 GO:0031323 GO:0031647 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034641 GO:0042548 GO:0042550 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0050789 GO:0050794 GO:0050821 GO:0051186 GO:0055035 GO:0055086 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072524 GO:0098796 GO:0098807 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PSI_PSAK

Protein Analysis

160

Amino Acids

17.09

Weight (kDa)

9.57

Isoelectric Point (pI)

35.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSI_PSAK	PF01241	63 - 154	6.7e-22	Photosystem I psaG / psaK

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015509)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55670
fragaria_vesca	FvH4_3g41620
malus_domestica	MD03G1042800.v1.1
prunus_persica	Prupe.6G035200_v2.0.a1
pyrus_communis	pycom03g03300
rosa_chinensis	RchiOBHm_Chr5g0074661
rosa_laevigata	RLG00000036495
rosa_multiflora	Rmu_sc0000909.1_g000028 Rmu_sc0008028.1_g000002
rosa_roxburghii	Rroxscaffold_1G00006880
rosa_rugosa	Rorug05G0433500
rosa_samantha	Rh5AG490600 Rh5BG511700 Rh5CG535500 Rh5DG524100
rosa_wichuraiana	Rw5G045440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	123, 165
AclWI	GGATC	1 cut(s)	362
AcoI	YGGCCR	2 cut(s)	3, 235
AfaI	GTAC	1 cut(s)	344
AgsI	TTSAA	3 cut(s)	253, 358, 382
AluBI	AGCT	5 cut(s)	20, 179, 184, 320, 471
AluI	AGCT	5 cut(s)	20, 179, 184, 320, 471
Alw26I	GTCTC	3 cut(s)	212, 224, 356
AlwI	GGATC	1 cut(s)	362
AoxI	GGCC	3 cut(s)	3, 88, 235
AspLEI	GCGC	1 cut(s)	14
AsuC2I	CCSGG	1 cut(s)	148
AsuHPI	GGTGA	1 cut(s)	21
AsuII	TTCGAA	1 cut(s)	315
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	238
BccI	CCATC	2 cut(s)	83, 203
BceAI	ACGGC	1 cut(s)	222
BciVI	GTATCC	1 cut(s)	452
BcnI	CCSGG	1 cut(s)	148
BcoDI	GTCTC	3 cut(s)	212, 224, 356
BfaI	CTAG	1 cut(s)	107
BfuI	GTATCC	1 cut(s)	452
BlpI	GCTNAGC	2 cut(s)	180, 185
Bme1390I	CCNGG	1 cut(s)	148
BmiI	GGNNCC	1 cut(s)	115
BmrFI	CCNGG	1 cut(s)	148
BmsI	GCATC	1 cut(s)	23
BpiI	GAAGAC	1 cut(s)	238
BpmI	CTGGAG	1 cut(s)	342
Bpu10I	CCTNAGC	1 cut(s)	336
Bpu1102I	GCTNAGC	2 cut(s)	180, 185
Bpu14I	TTCGAA	1 cut(s)	315
BpuMI	CCSGG	1 cut(s)	148
BsaI	GGTCTC	1 cut(s)	224
BsaJI	CCNNGG	2 cut(s)	85, 232
BsaWI	WCCGGW	1 cut(s)	289
BsaXI	ACNNNNNCTCC	2 cut(s)	56, 86
Bse3DI	GCAATG	1 cut(s)	460
BseDI	CCNNGG	2 cut(s)	85, 232
BseMI	GCAATG	1 cut(s)	460
BseMII	CTCAG	2 cut(s)	171, 223
BseRI	GAGGAG	3 cut(s)	106, 109, 151
BseX3I	CGGCCG	1 cut(s)	235
Bsh1285I	CGRYCG	1 cut(s)	238
BshFI	GGCC	3 cut(s)	5, 90, 237
BsiEI	CGRYCG	1 cut(s)	238
BsiSI	CCGG	2 cut(s)	147, 290
BslFI	GGGAC	1 cut(s)	81
BsmAI	GTCTC	3 cut(s)	212, 224, 356
BsmFI	GGGAC	1 cut(s)	81
BsnI	GGCC	3 cut(s)	5, 90, 237
Bso31I	GGTCTC	1 cut(s)	224
Bsp119I	TTCGAA	1 cut(s)	315
Bsp143I	GATC	2 cut(s)	328, 367
Bsp1720I	GCTNAGC	2 cut(s)	180, 185
Bsp19I	CCATGG	1 cut(s)	85
BspACI	CCGC	2 cut(s)	123, 165
BspANI	GGCC	3 cut(s)	5, 90, 237
BspCNI	CTCAG	2 cut(s)	172, 222
BspLI	GGNNCC	1 cut(s)	115
BspPI	GGATC	1 cut(s)	362
BspT104I	TTCGAA	1 cut(s)	315
BspTNI	GGTCTC	1 cut(s)	224
BsrDI	GCAATG	1 cut(s)	460
BssECI	CCNNGG	2 cut(s)	85, 232
BssMI	GATC	2 cut(s)	328, 367
BssT1I	CCWWGG	1 cut(s)	85
Bst6I	CTCTTC	1 cut(s)	233
BstBI	TTCGAA	1 cut(s)	315
BstDEI	CTNAG	4 cut(s)	180, 185, 209, 336
BstDSI	CCRYGG	1 cut(s)	85
BstHHI	GCGC	1 cut(s)	14
BstKTI	GATC	2 cut(s)	331, 370
BstMAI	GTCTC	3 cut(s)	212, 224, 356
BstMBI	GATC	2 cut(s)	328, 367
BstMCI	CGRYCG	1 cut(s)	238
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstSCI	CCNGG	1 cut(s)	146
BstV2I	GAAGAC	1 cut(s)	238
BstZI	CGGCCG	1 cut(s)	235
BsuI	GTATCC	1 cut(s)	452
BsuRI	GGCC	3 cut(s)	5, 90, 237
BtgI	CCRYGG	1 cut(s)	85
BtsI	GCAGTG	1 cut(s)	45
BtsIMutI	CAGTG	1 cut(s)	45
CfoI	GCGC	1 cut(s)	14
Csp6I	GTAC	1 cut(s)	343
CviAII	CATG	1 cut(s)	86
CviQI	GTAC	1 cut(s)	343
DdeI	CTNAG	4 cut(s)	180, 185, 209, 336
DpnI	GATC	2 cut(s)	330, 369
DpnII	GATC	2 cut(s)	328, 367
EaeI	YGGCCR	2 cut(s)	3, 235
EagI	CGGCCG	1 cut(s)	235
Eam1104I	CTCTTC	1 cut(s)	233
EarI	CTCTTC	1 cut(s)	233
EciI	GGCGGA	1 cut(s)	112
EclXI	CGGCCG	1 cut(s)	235
Eco130I	CCWWGG	1 cut(s)	85
Eco31I	GGTCTC	1 cut(s)	224
Eco52I	CGGCCG	1 cut(s)	235
EcoT14I	CCWWGG	1 cut(s)	85
ErhI	CCWWGG	1 cut(s)	85
FaeI	CATG	1 cut(s)	89
FaiI	YATR	2 cut(s)	87, 203
FaqI	GGGAC	1 cut(s)	81
FatI	CATG	1 cut(s)	85
FspBI	CTAG	1 cut(s)	107
GlaI	GCGC	1 cut(s)	13
GsuI	CTGGAG	1 cut(s)	342
HaeIII	GGCC	3 cut(s)	5, 90, 237
HapII	CCGG	2 cut(s)	147, 290
HhaI	GCGC	1 cut(s)	14
Hin1II	CATG	1 cut(s)	89
Hin6I	GCGC	1 cut(s)	12
HinP1I	GCGC	1 cut(s)	12
HindIII	AAGCTT	1 cut(s)	469
HinfI	GANTC	1 cut(s)	378
HpaII	CCGG	2 cut(s)	147, 290
HphI	GGTGA	1 cut(s)	21
Hpy188III	TCNNGA	3 cut(s)	172, 259, 355
HpyAV	CCTTC	2 cut(s)	101, 201
HpyCH4IV	ACGT	2 cut(s)	270, 345
HpyCH4V	TGCA	1 cut(s)	50
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	4 cut(s)	180, 185, 209, 336
HpySE526I	ACGT	2 cut(s)	270, 345
Hsp92II	CATG	1 cut(s)	89
HspAI	GCGC	1 cut(s)	12
Kzo9I	GATC	2 cut(s)	328, 367
LmnI	GCTCC	2 cut(s)	119, 292
LpnPI	CCDG	7 cut(s)	160, 201, 266, 272, 303, 306, 463
LweI	GCATC	1 cut(s)	23
MaeI	CTAG	1 cut(s)	107
MaeII	ACGT	2 cut(s)	270, 345
MalI	GATC	2 cut(s)	330, 369
MboI	GATC	2 cut(s)	328, 367
MboII	GAAGA	3 cut(s)	220, 238, 241
MfeI	CAATTG	1 cut(s)	372
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	372
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	7 cut(s)	110, 127, 130, 169, 172, 236, 242
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	167
MspI	CCGG	2 cut(s)	147, 290
MspR9I	CCNGG	1 cut(s)	148
MunI	CAATTG	1 cut(s)	372
MwoI	GCNNNNNNNGC	1 cut(s)	11
NciI	CCSGG	1 cut(s)	148
NcoI	CCATGG	1 cut(s)	85
NdeII	GATC	2 cut(s)	328, 367
NlaIII	CATG	1 cut(s)	89
NlaIV	GGNNCC	1 cut(s)	115
NmeAIII	GCCGAG	1 cut(s)	213
NspV	TTCGAA	1 cut(s)	315
PcsI	WCGNNNNNNNCGW	2 cut(s)	100, 240
PfeI	GAWTC	1 cut(s)	378
PspN4I	GGNNCC	1 cut(s)	115
RsaI	GTAC	1 cut(s)	344
RsaNI	GTAC	1 cut(s)	343
Sau3AI	GATC	2 cut(s)	328, 367
ScrFI	CCNGG	1 cut(s)	148
SetI	ASST	9 cut(s)	22, 112, 181, 186, 220, 273, 322, 348, 473
SfaNI	GCATC	1 cut(s)	23
SfuI	TTCGAA	1 cut(s)	315
Sse9I	AATT	1 cut(s)	372
SsiI	CCGC	2 cut(s)	123, 165
SspMI	CTAG	1 cut(s)	107
StyD4I	CCNGG	1 cut(s)	146
StyI	CCWWGG	1 cut(s)	85
TaiI	ACGT	2 cut(s)	273, 348
TaqI	TCGA	2 cut(s)	315, 362
TasI	AATT	1 cut(s)	372
TfiI	GAWTC	1 cut(s)	378
TscAI	CASTG	1 cut(s)	52
TspGWI	ACGGA	2 cut(s)	92, 315
TspRI	CASTG	1 cut(s)	52
XcmI	CCANNNNNNNNNTGG	1 cut(s)	317
XspI	CTAG	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.