Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0015509

Physical Location & Seq

Genomic Coordinates Reverse (-)

34939804 .. 34940283

Gene Structure 480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g41620.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGCAGCTTCTTCCTCCTCCACCTTGTTCCTCTCACCCTCCATCACCAGGCCACAACTCTCACCAACCCAAATATCCTTCCAAGGCCTCAGACCGCTCACCAGGTCTGCAGCCCCAAGCACCAAGTTGAGCATCACTGCACCAACCACCAAGAGATCAAGTGGTGTTGTGAGAGCTGAGCTGAGCACACCTTTGGTCATAAGCCTTAGCACAGGGCTCTCCCTTTTCTTGGGTAGGTTTGTGTTCTTCAACTTCCAGAGGGAGAATGTTGCCAAACAAGGCTTGCCTGAGCAGAATGGAGTGACTCATTTTGAGGCTGGTGACACCAGGGCTAAGGAGTATGTGAGCCTCCTTAAGTCAAATGACCCAGTTGGGTTCAACATTGTGGATGTTCTGGCATGGGGCTCAATTGGTCACATAGTGGCTTACTACATCTTGGCAACCTCCAGCAACGGCTATGATCCCAAGTTCTTTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006740 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009507 GO:0009521 GO:0009522 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009767 GO:0009773 GO:0009780 GO:0009941 GO:0009987 GO:0010109 GO:0015979 GO:0016020 GO:0019222 GO:0019362 GO:0019637 GO:0019684 GO:0022900 GO:0030093 GO:0031323 GO:0031647 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034641 GO:0042548 GO:0042550 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0050789 GO:0050794 GO:0050821 GO:0051186 GO:0055035 GO:0055086 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072524 GO:0098796 GO:0098807 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PSI_PSAK

Protein Analysis

160

Amino Acids

17.18

Weight (kDa)

9.63

Isoelectric Point (pI)

44.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSI_PSAK	PF01241	62 - 153	1.9e-22	Photosystem I psaG / psaK

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0015509)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55670
fragaria_vesca	FvH4_3g41620
malus_domestica	MD03G1042800.v1.1
prunus_persica	Prupe.6G035200_v2.0.a1
pyrus_communis	pycom03g03300
rosa_chinensis	RchiOBHm_Chr5g0074661
rosa_laevigata	RLG00000036495
rosa_multiflora	Rmu_sc0000909.1_g000028 Rmu_sc0008028.1_g000002
rosa_roxburghii	Rroxscaffold_1G00006880
rosa_rugosa	Rorug05G0433500
rosa_samantha	Rh5AG490600 Rh5BG511700 Rh5CG535500 Rh5DG524100
rosa_wichuraiana	Rw5G045440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	97
AciI	CCGC	1 cut(s)	95
AclWI	GGATC	1 cut(s)	455
AdeI	CACNNNGTG	1 cut(s)	421
AfiI	CCNNNNNNNGG	2 cut(s)	48, 229
AflII	CTTAAG	1 cut(s)	353
AgsI	TTSAA	2 cut(s)	250, 379
AjnI	CCWGG	3 cut(s)	47, 101, 326
AluBI	AGCT	3 cut(s)	8, 176, 181
AluI	AGCT	3 cut(s)	8, 176, 181
Alw21I	GWGCWC	1 cut(s)	188
AlwI	GGATC	1 cut(s)	455
AoxI	GGCC	2 cut(s)	50, 85
ApeKI	GCWGC	2 cut(s)	5, 110
AsuHPI	GGTGA	5 cut(s)	27, 37, 54, 91, 332
BanII	GRGCYC	2 cut(s)	219, 407
Bbv12I	GWGCWC	1 cut(s)	188
BbvI	GCAGC	2 cut(s)	17, 122
BccI	CCATC	1 cut(s)	50
BceAI	ACGGC	1 cut(s)	469
BciT130I	CCWGG	3 cut(s)	49, 103, 328
BfmI	CTRYAG	1 cut(s)	108
BfrI	CTTAAG	1 cut(s)	353
BisI	GCNGC	2 cut(s)	6, 111
BlpI	GCTNAGC	2 cut(s)	177, 182
BlsI	GCNGC	2 cut(s)	7, 112
Bme1390I	CCNGG	3 cut(s)	49, 103, 328
BmrFI	CCNGG	3 cut(s)	49, 103, 328
BmrI	ACTGGG	1 cut(s)	362
BmsI	GCATC	1 cut(s)	141
BmuI	ACTGGG	1 cut(s)	362
BpmI	CTGGAG	1 cut(s)	430
Bpu10I	CCTNAGC	3 cut(s)	206, 288, 333
Bpu1102I	GCTNAGC	2 cut(s)	177, 182
BsaJI	CCNNGG	2 cut(s)	82, 327
Bsc4I	CCNNNNNNNGG	2 cut(s)	48, 229
Bse1I	ACTGG	1 cut(s)	368
BseBI	CCWGG	3 cut(s)	49, 103, 328
BseDI	CCNNGG	2 cut(s)	82, 327
BseGI	GGATG	1 cut(s)	394
BseLI	CCNNNNNNNGG	2 cut(s)	48, 229
BseMII	CTCAG	4 cut(s)	103, 168, 173, 279
BseNI	ACTGG	1 cut(s)	368
BseRI	GAGGAG	1 cut(s)	7
BseXI	GCAGC	2 cut(s)	17, 122
BsgI	GTGCAG	1 cut(s)	123
BshFI	GGCC	2 cut(s)	52, 87
BsiHKAI	GWGCWC	1 cut(s)	188
BslI	CCNNNNNNNGG	2 cut(s)	48, 229
BsnI	GGCC	2 cut(s)	52, 87
Bsp1286I	GDGCHC	3 cut(s)	188, 219, 407
Bsp143I	GATC	2 cut(s)	155, 460
Bsp1720I	GCTNAGC	2 cut(s)	177, 182
BspACI	CCGC	1 cut(s)	95
BspANI	GGCC	2 cut(s)	52, 87
BspCNI	CTCAG	4 cut(s)	102, 169, 174, 280
BspMAI	CTGCAG	1 cut(s)	112
BspPI	GGATC	1 cut(s)	455
BspTI	CTTAAG	1 cut(s)	353
BsrBI	CCGCTC	1 cut(s)	97
BsrI	ACTGG	1 cut(s)	368
BssECI	CCNNGG	2 cut(s)	82, 327
BssMI	GATC	2 cut(s)	155, 460
BssT1I	CCWWGG	1 cut(s)	82
Bst2UI	CCWGG	3 cut(s)	49, 103, 328
BstAFI	CTTAAG	1 cut(s)	353
BstC8I	GCNNGC	1 cut(s)	284
BstDEI	CTNAG	6 cut(s)	89, 177, 182, 206, 288, 333
BstF5I	GGATG	1 cut(s)	394
BstKTI	GATC	2 cut(s)	158, 463
BstMBI	GATC	2 cut(s)	155, 460
BstNI	CCWGG	3 cut(s)	49, 103, 328
BstSCI	CCNGG	3 cut(s)	47, 101, 326
BstSFI	CTRYAG	1 cut(s)	108
BstV1I	GCAGC	2 cut(s)	17, 122
BsuRI	GGCC	2 cut(s)	52, 87
BtsCI	GGATG	1 cut(s)	394
BtsI	GCAGTG	1 cut(s)	135
BtsIMutI	CAGTG	1 cut(s)	135
Cac8I	GCNNGC	1 cut(s)	284
CsiI	ACCWGGT	1 cut(s)	101
CviAII	CATG	1 cut(s)	399
DdeI	CTNAG	6 cut(s)	89, 177, 182, 206, 288, 333
DpnI	GATC	2 cut(s)	157, 462
DpnII	GATC	2 cut(s)	155, 460
DraIII	CACNNNGTG	1 cut(s)	421
Eco130I	CCWWGG	1 cut(s)	82
Eco147I	AGGCCT	1 cut(s)	87
Eco24I	GRGCYC	2 cut(s)	219, 407
EcoRII	CCWGG	3 cut(s)	47, 101, 326
EcoT14I	CCWWGG	1 cut(s)	82
EcoT38I	GRGCYC	2 cut(s)	219, 407
ErhI	CCWWGG	1 cut(s)	82
FaeI	CATG	1 cut(s)	402
FaiI	YATR	5 cut(s)	200, 342, 400, 419, 459
FatI	CATG	1 cut(s)	398
Fnu4HI	GCNGC	2 cut(s)	6, 111
FokI	GGATG	1 cut(s)	401
FriOI	GRGCYC	2 cut(s)	219, 407
Fsp4HI	GCNGC	2 cut(s)	6, 111
GluI	GCNGC	2 cut(s)	6, 111
GsuI	CTGGAG	1 cut(s)	430
HaeIII	GGCC	2 cut(s)	52, 87
Hin1II	CATG	1 cut(s)	402
HinfI	GANTC	1 cut(s)	304
HphI	GGTGA	5 cut(s)	27, 37, 54, 91, 332
Hpy188I	TCNGA	1 cut(s)	92
Hpy188III	TCNNGA	1 cut(s)	256
HpyAV	CCTTC	1 cut(s)	88
HpyCH4V	TGCA	2 cut(s)	110, 140
HpyF3I	CTNAG	6 cut(s)	89, 177, 182, 206, 288, 333
Hsp92II	CATG	1 cut(s)	402
Kzo9I	GATC	2 cut(s)	155, 460
Lsp1109I	GCAGC	2 cut(s)	17, 122
LweI	GCATC	1 cut(s)	141
MabI	ACCWGGT	1 cut(s)	101
MaeIII	GTNAC	3 cut(s)	301, 320, 413
MalI	GATC	2 cut(s)	157, 462
MbiI	CCGCTC	1 cut(s)	97
MboI	GATC	2 cut(s)	155, 460
MboII	GAAGA	2 cut(s)	3, 238
MfeI	CAATTG	1 cut(s)	408
MhlI	GDGCHC	3 cut(s)	188, 219, 407
MluCI	AATT	1 cut(s)	408
MlyI	GAGTC	1 cut(s)	298
MnlI	CCTC	9 cut(s)	25, 28, 41, 49, 98, 252, 307, 359, 454
MseI	TTAA	1 cut(s)	354
MspCI	CTTAAG	1 cut(s)	353
MspR9I	CCNGG	3 cut(s)	49, 103, 328
MunI	CAATTG	1 cut(s)	408
MvaI	CCWGG	3 cut(s)	49, 103, 328
NdeII	GATC	2 cut(s)	155, 460
NlaIII	CATG	1 cut(s)	402
NmuCI	GTSAC	3 cut(s)	301, 320, 413
PceI	AGGCCT	1 cut(s)	87
PkrI	GCNGC	2 cut(s)	7, 112
PleI	GAGTC	1 cut(s)	298
PpsI	GAGTC	1 cut(s)	298
Psp6I	CCWGG	3 cut(s)	47, 101, 326
PspGI	CCWGG	3 cut(s)	47, 101, 326
PstI	CTGCAG	1 cut(s)	112
SaqAI	TTAA	1 cut(s)	354
SatI	GCNGC	2 cut(s)	6, 111
Sau3AI	GATC	2 cut(s)	155, 460
SchI	GAGTC	1 cut(s)	298
ScrFI	CCNGG	3 cut(s)	49, 103, 328
SduI	GDGCHC	3 cut(s)	188, 219, 407
SetI	ASST	8 cut(s)	10, 26, 107, 178, 183, 193, 239, 446
SexAI	ACCWGGT	1 cut(s)	101
SfaNI	GCATC	1 cut(s)	141
SfcI	CTRYAG	1 cut(s)	108
SmlI	CTYRAG	1 cut(s)	353
SmoI	CTYRAG	1 cut(s)	353
Sse9I	AATT	1 cut(s)	408
SseBI	AGGCCT	1 cut(s)	87
SsiI	CCGC	1 cut(s)	95
StuI	AGGCCT	1 cut(s)	87
StyD4I	CCNGG	3 cut(s)	47, 101, 326
StyI	CCWWGG	1 cut(s)	82
TasI	AATT	1 cut(s)	408
Tru1I	TTAA	1 cut(s)	354
Tru9I	TTAA	1 cut(s)	354
TscAI	CASTG	1 cut(s)	142
TseFI	GTSAC	3 cut(s)	301, 320, 413
TseI	GCWGC	2 cut(s)	5, 110
Tsp45I	GTSAC	3 cut(s)	301, 320, 413
TspRI	CASTG	1 cut(s)	142
Vha464I	CTTAAG	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.