Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0015509

Physical Location & Seq

Genomic Coordinates Forward (+)

3353706 .. 3354197

Gene Structure 492 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1042800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGCAGCCACCTCCTCCGCCTTGTTCTCAGCCCCGTCCATCTCCTCCACAGCCACAAGGCACCACCAGACCCTCTCACCAACCCAAATCTCCTTCCAAGGCCTCAGACCCCTCACCAAGTCCTCCCCTCCCACCAAGCTTGGTTTGCATGCACCCAGCACCAGGAGAAGTTCATGCGTCGTCAAAGCTGAGCTGAACCCATCACTGGTCATCAGCCTGAGCACCGGACTCTCTCTCTTCCTTGGGAGGTTTGTTTTCTTCAACTTCCAGAGAGAGAATGTGGCCAAGCAAGGGTTGCCGGAGCAGAACGGGGTGACACATTTCGAGGCTGGGGACACTAGGGCTAAGGAGTATGTGAGCCTCCTCAAGTCCAATGACCCTGTTGGGTTCAACATTGTGGATGTTTTGGCTTGGGGTTCTATCGGTCACATCGTGGCTTACTACATCTTGGCCACCTCTAGCAATGGCTATGATCCCAAGTTCTTTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006740 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009507 GO:0009521 GO:0009522 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009767 GO:0009773 GO:0009780 GO:0009941 GO:0009987 GO:0010109 GO:0015979 GO:0016020 GO:0019222 GO:0019362 GO:0019637 GO:0019684 GO:0022900 GO:0030093 GO:0031323 GO:0031647 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034641 GO:0042548 GO:0042550 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0050789 GO:0050794 GO:0050821 GO:0051186 GO:0055035 GO:0055086 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072524 GO:0098796 GO:0098807 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PSI_PSAK

Protein Analysis

164

Amino Acids

17.65

Weight (kDa)

9.41

Isoelectric Point (pI)

44.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSI_PSAK	PF01241	66 - 157	3.9e-22	Photosystem I psaG / psaK

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0015509)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55670
fragaria_vesca	FvH4_3g41620
malus_domestica	MD03G1042800.v1.1
prunus_persica	Prupe.6G035200_v2.0.a1
pyrus_communis	pycom03g03300
rosa_chinensis	RchiOBHm_Chr5g0074661
rosa_laevigata	RLG00000036495
rosa_multiflora	Rmu_sc0000909.1_g000028 Rmu_sc0008028.1_g000002
rosa_roxburghii	Rroxscaffold_1G00006880
rosa_rugosa	Rorug05G0433500
rosa_samantha	Rh5AG490600 Rh5BG511700 Rh5CG535500 Rh5DG524100
rosa_wichuraiana	Rw5G045440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	60
AciI	CCGC	1 cut(s)	18
AclWI	GGATC	1 cut(s)	467
AcoI	YGGCCR	2 cut(s)	282, 450
AdeI	CACNNNGTG	1 cut(s)	433
AfiI	CCNNNNNNNGG	3 cut(s)	162, 205, 291
AgsI	TTSAA	3 cut(s)	262, 391, 488
AjnI	CCWGG	1 cut(s)	161
AluBI	AGCT	3 cut(s)	139, 188, 193
AluI	AGCT	3 cut(s)	139, 188, 193
Alw21I	GWGCWC	1 cut(s)	224
AlwI	GGATC	1 cut(s)	467
AoxI	GGCC	3 cut(s)	100, 282, 450
ApeKI	GCWGC	1 cut(s)	5
AsuHPI	GGTGA	3 cut(s)	69, 106, 325
BalI	TGGCCA	2 cut(s)	284, 452
BanI	GGYRCC	1 cut(s)	60
Bbv12I	GWGCWC	1 cut(s)	224
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	2 cut(s)	47, 208
BciT130I	CCWGG	1 cut(s)	163
BfaI	CTAG	2 cut(s)	339, 459
BisI	GCNGC	1 cut(s)	6
BlpI	GCTNAGC	1 cut(s)	189
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	1 cut(s)	163
BmiI	GGNNCC	1 cut(s)	62
BmrFI	CCNGG	1 cut(s)	163
Bpu10I	CCTNAGC	2 cut(s)	218, 345
Bpu1102I	GCTNAGC	1 cut(s)	189
BpuEI	CTTGAG	1 cut(s)	350
BsaJI	CCNNGG	2 cut(s)	97, 241
BsaWI	WCCGGW	1 cut(s)	224
Bsc4I	CCNNNNNNNGG	3 cut(s)	162, 205, 291
Bse1I	ACTGG	1 cut(s)	210
Bse3DI	GCAATG	1 cut(s)	469
BseBI	CCWGG	1 cut(s)	163
BseDI	CCNNGG	2 cut(s)	97, 241
BseGI	GGATG	1 cut(s)	406
BseLI	CCNNNNNNNGG	3 cut(s)	162, 205, 291
BseMI	GCAATG	1 cut(s)	469
BseMII	CTCAG	4 cut(s)	42, 118, 180, 209
BseNI	ACTGG	1 cut(s)	210
BseRI	GAGGAG	3 cut(s)	4, 34, 353
BseXI	GCAGC	1 cut(s)	17
BseYI	CCCAGC	2 cut(s)	155, 329
BshFI	GGCC	3 cut(s)	102, 284, 452
BshNI	GGYRCC	1 cut(s)	60
BsiHKAI	GWGCWC	1 cut(s)	224
BsiSI	CCGG	2 cut(s)	225, 299
BslFI	GGGAC	1 cut(s)	347
BslI	CCNNNNNNNGG	3 cut(s)	162, 205, 291
BsmFI	GGGAC	1 cut(s)	347
BsnI	GGCC	3 cut(s)	102, 284, 452
Bsp1286I	GDGCHC	1 cut(s)	224
Bsp143I	GATC	1 cut(s)	472
Bsp1720I	GCTNAGC	1 cut(s)	189
BspACI	CCGC	1 cut(s)	18
BspANI	GGCC	3 cut(s)	102, 284, 452
BspCNI	CTCAG	4 cut(s)	41, 117, 181, 210
BspLI	GGNNCC	1 cut(s)	62
BspPI	GGATC	1 cut(s)	467
BspT107I	GGYRCC	1 cut(s)	60
BsrDI	GCAATG	1 cut(s)	469
BsrI	ACTGG	1 cut(s)	210
BssECI	CCNNGG	2 cut(s)	97, 241
BssMI	GATC	1 cut(s)	472
BssT1I	CCWWGG	2 cut(s)	97, 241
Bst2UI	CCWGG	1 cut(s)	163
Bst6I	CTCTTC	1 cut(s)	242
BstAPI	GCANNNNNTGC	1 cut(s)	295
BstC8I	GCNNGC	1 cut(s)	150
BstDEI	CTNAG	5 cut(s)	28, 104, 189, 218, 345
BstF5I	GGATG	1 cut(s)	406
BstKTI	GATC	1 cut(s)	475
BstMBI	GATC	1 cut(s)	472
BstMWI	GCNNNNNNNGC	2 cut(s)	145, 295
BstNI	CCWGG	1 cut(s)	163
BstNSI	RCATGY	1 cut(s)	152
BstSCI	CCNGG	1 cut(s)	161
BstV1I	GCAGC	1 cut(s)	17
BsuRI	GGCC	3 cut(s)	102, 284, 452
BtsCI	GGATG	1 cut(s)	406
BtsIMutI	CAGTG	1 cut(s)	203
Cac8I	GCNNGC	1 cut(s)	150
CseI	GACGC	1 cut(s)	166
CspCI	CAANNNNNGTGG	2 cut(s)	121, 156
CviAII	CATG	2 cut(s)	149, 174
DdeI	CTNAG	5 cut(s)	28, 104, 189, 218, 345
DpnI	GATC	1 cut(s)	474
DpnII	GATC	1 cut(s)	472
DraIII	CACNNNGTG	1 cut(s)	433
EaeI	YGGCCR	2 cut(s)	282, 450
Eam1104I	CTCTTC	1 cut(s)	242
EarI	CTCTTC	1 cut(s)	242
EciI	GGCGGA	1 cut(s)	7
Eco130I	CCWWGG	2 cut(s)	97, 241
Eco147I	AGGCCT	1 cut(s)	102
EcoRII	CCWGG	1 cut(s)	161
EcoT14I	CCWWGG	2 cut(s)	97, 241
ErhI	CCWWGG	2 cut(s)	97, 241
FaeI	CATG	2 cut(s)	152, 177
FaiI	YATR	4 cut(s)	150, 175, 354, 471
FaqI	GGGAC	1 cut(s)	347
FatI	CATG	2 cut(s)	148, 173
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	1 cut(s)	413
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	2 cut(s)	339, 459
GluI	GCNGC	1 cut(s)	6
GsaI	CCCAGC	2 cut(s)	159, 333
HaeIII	GGCC	3 cut(s)	102, 284, 452
HapII	CCGG	2 cut(s)	225, 299
HgaI	GACGC	1 cut(s)	166
Hin1II	CATG	2 cut(s)	152, 177
HindIII	AAGCTT	1 cut(s)	137
HinfI	GANTC	1 cut(s)	228
HpaII	CCGG	2 cut(s)	225, 299
HphI	GGTGA	3 cut(s)	69, 106, 325
Hpy188I	TCNGA	1 cut(s)	107
Hpy188III	TCNNGA	1 cut(s)	268
Hpy99I	CGWCG	1 cut(s)	182
HpyAV	CCTTC	1 cut(s)	103
HpyCH4V	TGCA	2 cut(s)	148, 152
HpyF10VI	GCNNNNNNNGC	2 cut(s)	145, 295
HpyF3I	CTNAG	5 cut(s)	28, 104, 189, 218, 345
Hsp92II	CATG	2 cut(s)	152, 177
Kzo9I	GATC	1 cut(s)	472
LmnI	GCTCC	1 cut(s)	301
Lsp1109I	GCAGC	1 cut(s)	17
MaeI	CTAG	2 cut(s)	339, 459
MaeIII	GTNAC	2 cut(s)	313, 425
MalI	GATC	1 cut(s)	474
MboI	GATC	1 cut(s)	472
MboII	GAAGA	2 cut(s)	229, 250
MhlI	GDGCHC	1 cut(s)	224
MlsI	TGGCCA	2 cut(s)	284, 452
MluNI	TGGCCA	2 cut(s)	284, 452
MlyI	GAGTC	1 cut(s)	222
Mox20I	TGGCCA	2 cut(s)	284, 452
MscI	TGGCCA	2 cut(s)	284, 452
Msp20I	TGGCCA	2 cut(s)	284, 452
MspI	CCGG	2 cut(s)	225, 299
MspR9I	CCNGG	1 cut(s)	163
MvaI	CCWGG	1 cut(s)	163
MwoI	GCNNNNNNNGC	2 cut(s)	145, 295
NdeII	GATC	1 cut(s)	472
NlaIII	CATG	2 cut(s)	152, 177
NlaIV	GGNNCC	1 cut(s)	62
NmuCI	GTSAC	2 cut(s)	313, 425
NspI	RCATGY	1 cut(s)	152
PaeI	GCATGC	1 cut(s)	152
PceI	AGGCCT	1 cut(s)	102
PcsI	WCGNNNNNNNCGW	1 cut(s)	429
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	1 cut(s)	222
PpsI	GAGTC	1 cut(s)	222
Psp6I	CCWGG	1 cut(s)	161
PspFI	CCCAGC	2 cut(s)	155, 329
PspGI	CCWGG	1 cut(s)	161
PspN4I	GGNNCC	1 cut(s)	62
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	1 cut(s)	472
SchI	GAGTC	1 cut(s)	222
ScrFI	CCNGG	1 cut(s)	163
SduI	GDGCHC	1 cut(s)	224
SetI	ASST	6 cut(s)	14, 141, 190, 195, 251, 458
SmlI	CTYRAG	1 cut(s)	365
SmoI	CTYRAG	1 cut(s)	365
SphI	GCATGC	1 cut(s)	152
SseBI	AGGCCT	1 cut(s)	102
SsiI	CCGC	1 cut(s)	18
SspMI	CTAG	2 cut(s)	339, 459
StuI	AGGCCT	1 cut(s)	102
StyD4I	CCNGG	1 cut(s)	161
StyI	CCWWGG	2 cut(s)	97, 241
TaqI	TCGA	1 cut(s)	324
TaqII	GACCGA	1 cut(s)	413
TscAI	CASTG	1 cut(s)	210
TseFI	GTSAC	2 cut(s)	313, 425
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	2 cut(s)	313, 425
TspDTI	ATGAA	1 cut(s)	162
TspRI	CASTG	1 cut(s)	210
XceI	RCATGY	1 cut(s)	152
XspI	CTAG	2 cut(s)	339, 459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.