Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0015509

Physical Location & Seq

Genomic Coordinates Forward (+)

2651193 .. 2652365

Gene Structure 1173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G035200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGCAGCCTCTTCCTCCACCTTGTTCTCTGCCCCAGCCATCTCTTCCACCATCTCAAGGAGCCATACTCACCAACTCTCACCAACCCAAATCTCCTTCCAAGGCCTTAGACCCCTCACCAAGGCTGCCCCAAGCACCAAGCTGAGCTTCAGTGCACCAAACACCAAGAGATCAACTGGTGTTGTGAGAGCAGAGCTGAACCCATCTTTGGTCATAAGCCTGAGCACAGGGCTGTCACTTTTCTTGGGGAGGTTTGTGTTCTTCAACTTCCAGAGAGAGAATGTGGCCAAGCAAGGCTTGCCTGAGCAGAATGGAGTAACCCATTTTGAGGCAGGAGACACCAGAGCCAAGGAGTATGTGAGCCTCCTCAAATCTAATGACCCTGTTGGCTTCAACATTGTAGATGTTCTGGCCTGGGGCTCCATTGGTCACATAGTGGCTTACTACATCTTGGCCACTTCTAGCAATGGCTATGATCCCAAGTTCTTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006740 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009507 GO:0009521 GO:0009522 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009767 GO:0009773 GO:0009780 GO:0009941 GO:0009987 GO:0010109 GO:0015979 GO:0016020 GO:0019222 GO:0019362 GO:0019637 GO:0019684 GO:0022900 GO:0030093 GO:0031323 GO:0031647 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034641 GO:0042548 GO:0042550 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0050789 GO:0050794 GO:0050821 GO:0051186 GO:0055035 GO:0055086 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072524 GO:0098796 GO:0098807 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PSI_PSAK

Protein Analysis

165

Amino Acids

17.73

Weight (kDa)

9.57

Isoelectric Point (pI)

38.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015509)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55670
fragaria_vesca	FvH4_3g41620
malus_domestica	MD03G1042800.v1.1
prunus_persica	Prupe.6G035200_v2.0.a1
pyrus_communis	pycom03g03300
rosa_chinensis	RchiOBHm_Chr5g0074661
rosa_laevigata	RLG00000036495
rosa_multiflora	Rmu_sc0000909.1_g000028 Rmu_sc0008028.1_g000002
rosa_roxburghii	Rroxscaffold_1G00006880
rosa_rugosa	Rorug05G0433500
rosa_samantha	Rh5AG490600 Rh5BG511700 Rh5CG535500 Rh5DG524100
rosa_wichuraiana	Rw5G045440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	470
AcoI	YGGCCR	2 cut(s)	285, 453
AcuI	CTGAAG	1 cut(s)	133
AdeI	CACNNNGTG	1 cut(s)	436
AfiI	CCNNNNNNNGG	4 cut(s)	57, 121, 208, 328
AgsI	TTSAA	3 cut(s)	265, 394, 491
AjnI	CCWGG	1 cut(s)	413
AjuI	GAANNNNNNNTTGG	4 cut(s)	131, 163, 191, 223
AluBI	AGCT	3 cut(s)	142, 147, 196
AluI	AGCT	3 cut(s)	142, 147, 196
Alw21I	GWGCWC	2 cut(s)	157, 227
Alw26I	GTCTC	1 cut(s)	330
Alw44I	GTGCAC	1 cut(s)	153
AlwI	GGATC	1 cut(s)	470
AoxI	GGCC	4 cut(s)	103, 285, 411, 453
ApaLI	GTGCAC	1 cut(s)	153
ApeKI	GCWGC	2 cut(s)	5, 125
AsuHPI	GGTGA	3 cut(s)	62, 72, 109
BaeGI	GKGCMC	1 cut(s)	157
BalI	TGGCCA	2 cut(s)	287, 455
BanII	GRGCYC	1 cut(s)	422
Bbv12I	GWGCWC	2 cut(s)	157, 227
BbvI	GCAGC	2 cut(s)	17, 112
BccI	CCATC	3 cut(s)	47, 59, 211
BciT130I	CCWGG	1 cut(s)	415
BcoDI	GTCTC	1 cut(s)	330
BfaI	CTAG	1 cut(s)	462
BisI	GCNGC	2 cut(s)	6, 126
BlpI	GCTNAGC	1 cut(s)	143
BlsI	GCNGC	2 cut(s)	7, 127
Bme1390I	CCNGG	1 cut(s)	415
BmiI	GGNNCC	2 cut(s)	62, 421
BmrFI	CCNGG	1 cut(s)	415
BplI	GAGNNNNNCTC	2 cut(s)	52, 84
Bpu10I	CCTNAGC	2 cut(s)	221, 303
Bpu1102I	GCTNAGC	1 cut(s)	143
BpuEI	CTTGAG	1 cut(s)	40
BsaJI	CCNNGG	4 cut(s)	100, 120, 348, 414
Bsc4I	CCNNNNNNNGG	4 cut(s)	57, 121, 208, 328
Bse1I	ACTGG	1 cut(s)	181
Bse3DI	GCAATG	1 cut(s)	472
BseBI	CCWGG	1 cut(s)	415
BseDI	CCNNGG	4 cut(s)	100, 120, 348, 414
BseLI	CCNNNNNNNGG	4 cut(s)	57, 121, 208, 328
BseMI	GCAATG	1 cut(s)	472
BseMII	CTCAG	3 cut(s)	134, 212, 294
BseNI	ACTGG	1 cut(s)	181
BseRI	GAGGAG	1 cut(s)	356
BseSI	GKGCMC	1 cut(s)	157
BseXI	GCAGC	2 cut(s)	17, 112
BseYI	CCCAGC	1 cut(s)	34
BshFI	GGCC	4 cut(s)	105, 287, 413, 455
BsiHKAI	GWGCWC	2 cut(s)	157, 227
BslI	CCNNNNNNNGG	4 cut(s)	57, 121, 208, 328
BsmAI	GTCTC	1 cut(s)	330
BsnI	GGCC	4 cut(s)	105, 287, 413, 455
Bsp1286I	GDGCHC	3 cut(s)	157, 227, 422
Bsp143I	GATC	2 cut(s)	170, 475
Bsp1720I	GCTNAGC	1 cut(s)	143
BspANI	GGCC	4 cut(s)	105, 287, 413, 455
BspCNI	CTCAG	3 cut(s)	135, 213, 295
BspLI	GGNNCC	2 cut(s)	62, 421
BspPI	GGATC	1 cut(s)	470
BsrDI	GCAATG	1 cut(s)	472
BsrI	ACTGG	1 cut(s)	181
BssECI	CCNNGG	4 cut(s)	100, 120, 348, 414
BssMI	GATC	2 cut(s)	170, 475
BssT1I	CCWWGG	3 cut(s)	100, 120, 348
Bst2UI	CCWGG	1 cut(s)	415
Bst6I	CTCTTC	2 cut(s)	16, 49
BstAPI	GCANNNNNTGC	1 cut(s)	298
BstC8I	GCNNGC	1 cut(s)	299
BstDEI	CTNAG	4 cut(s)	107, 143, 221, 303
BstENI	CCTNNNNNAGG	1 cut(s)	119
BstKTI	GATC	2 cut(s)	173, 478
BstMAI	GTCTC	1 cut(s)	330
BstMBI	GATC	2 cut(s)	170, 475
BstMWI	GCNNNNNNNGC	1 cut(s)	298
BstNI	CCWGG	1 cut(s)	415
BstSCI	CCNGG	1 cut(s)	413
BstSLI	GKGCMC	1 cut(s)	157
BstV1I	GCAGC	2 cut(s)	17, 112
BsuRI	GGCC	4 cut(s)	105, 287, 413, 455
BtsIMutI	CAGTG	1 cut(s)	157
Cac8I	GCNNGC	1 cut(s)	299
DdeI	CTNAG	4 cut(s)	107, 143, 221, 303
DpnI	GATC	2 cut(s)	172, 477
DpnII	GATC	2 cut(s)	170, 475
DraIII	CACNNNGTG	1 cut(s)	436
EaeI	YGGCCR	2 cut(s)	285, 453
Eam1104I	CTCTTC	2 cut(s)	16, 49
EarI	CTCTTC	2 cut(s)	16, 49
Eco130I	CCWWGG	3 cut(s)	100, 120, 348
Eco147I	AGGCCT	1 cut(s)	105
Eco24I	GRGCYC	1 cut(s)	422
Eco57I	CTGAAG	1 cut(s)	133
EcoNI	CCTNNNNNAGG	1 cut(s)	119
EcoRII	CCWGG	1 cut(s)	413
EcoT14I	CCWWGG	3 cut(s)	100, 120, 348
EcoT38I	GRGCYC	1 cut(s)	422
ErhI	CCWWGG	3 cut(s)	100, 120, 348
FaiI	YATR	5 cut(s)	66, 215, 357, 434, 474
FalI	AAGNNNNNCTT	4 cut(s)	131, 163, 281, 313
Fnu4HI	GCNGC	2 cut(s)	6, 126
FriOI	GRGCYC	1 cut(s)	422
Fsp4HI	GCNGC	2 cut(s)	6, 126
FspBI	CTAG	1 cut(s)	462
GluI	GCNGC	2 cut(s)	6, 126
GsaI	CCCAGC	1 cut(s)	38
HaeIII	GGCC	4 cut(s)	105, 287, 413, 455
HphI	GGTGA	3 cut(s)	62, 72, 109
Hpy166II	GTNNAC	1 cut(s)	155
Hpy188III	TCNNGA	1 cut(s)	271
Hpy8I	GTNNAC	1 cut(s)	155
HpyAV	CCTTC	1 cut(s)	106
HpyCH4V	TGCA	1 cut(s)	155
HpyF10VI	GCNNNNNNNGC	1 cut(s)	298
HpyF3I	CTNAG	4 cut(s)	107, 143, 221, 303
Kzo9I	GATC	2 cut(s)	170, 475
LmnI	GCTCC	2 cut(s)	60, 425
Lsp1109I	GCAGC	2 cut(s)	17, 112
MaeI	CTAG	1 cut(s)	462
MaeIII	GTNAC	3 cut(s)	234, 316, 428
MalI	GATC	2 cut(s)	172, 477
MboI	GATC	2 cut(s)	170, 475
MboII	GAAGA	3 cut(s)	3, 36, 253
MhlI	GDGCHC	3 cut(s)	157, 227, 422
MlsI	TGGCCA	2 cut(s)	287, 455
MluNI	TGGCCA	2 cut(s)	287, 455
MnlI	CCTC	7 cut(s)	19, 25, 125, 243, 322, 374, 377
Mox20I	TGGCCA	2 cut(s)	287, 455
MscI	TGGCCA	2 cut(s)	287, 455
Msp20I	TGGCCA	2 cut(s)	287, 455
MspR9I	CCNGG	1 cut(s)	415
MvaI	CCWGG	1 cut(s)	415
MwoI	GCNNNNNNNGC	1 cut(s)	298
NdeII	GATC	2 cut(s)	170, 475
NlaIV	GGNNCC	2 cut(s)	62, 421
NmuCI	GTSAC	2 cut(s)	234, 428
PceI	AGGCCT	1 cut(s)	105
PkrI	GCNGC	2 cut(s)	7, 127
Psp6I	CCWGG	1 cut(s)	413
PspFI	CCCAGC	1 cut(s)	34
PspGI	CCWGG	1 cut(s)	413
PspN4I	GGNNCC	2 cut(s)	62, 421
SatI	GCNGC	2 cut(s)	6, 126
Sau3AI	GATC	2 cut(s)	170, 475
ScrFI	CCNGG	1 cut(s)	415
SduI	GDGCHC	3 cut(s)	157, 227, 422
SetI	ASST	5 cut(s)	23, 144, 149, 198, 254
SmlI	CTYRAG	1 cut(s)	55
SmoI	CTYRAG	1 cut(s)	55
SseBI	AGGCCT	1 cut(s)	105
SspMI	CTAG	1 cut(s)	462
StuI	AGGCCT	1 cut(s)	105
StyD4I	CCNGG	1 cut(s)	413
StyI	CCWWGG	3 cut(s)	100, 120, 348
TscAI	CASTG	1 cut(s)	157
TseFI	GTSAC	2 cut(s)	234, 428
TseI	GCWGC	2 cut(s)	5, 125
Tsp45I	GTSAC	2 cut(s)	234, 428
TspRI	CASTG	1 cut(s)	157
VneI	GTGCAC	1 cut(s)	153
XagI	CCTNNNNNAGG	1 cut(s)	119
XspI	CTAG	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.