Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015509

Physical Location & Seq

Genomic Coordinates Reverse (-)

80656261 .. 80657331

Gene Structure 1071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34944

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGCAGCTTCTTCCTCCTCCACCTTGTTCCTCTCACCCTCCATCACAAGGCCACAACTCTCACCAACCCAAATCTCCTTCCAAGGCCTCAGACCCCTCACCAGGTCTGCAGCCCCAAGCACCAAGTTGAGCTTCACTGCACCAACCACCAAGAGATCAAGTGGTGTTGTGAGAGCTGAGCTGAGCCCACCTTTGGTCATAAGCCTCAGCACAGGTCTATCACTATTCTTGGGTAGGTTTGTGTTCTTCAACTTCCAGAGGGAGAATGTTGCCAAACAAGGCTTGCCTGAGCAGAATGGAGTGACTCATTTCGAGGCTGGTGACACCAGGGCTAAGGAGTATGTGAGCCTCCTCAAGTCAAATGACCCAGTTGGATTCAACATTGTGGATGTTCTGGCTTGGGGTTCAATTGGTCACATAGTGGCTTACTACATCTTGGCAACCTCCAGCAATGGCTATGATCCCAAGTTCTTTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006740 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009507 GO:0009521 GO:0009522 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009767 GO:0009773 GO:0009780 GO:0009941 GO:0009987 GO:0010109 GO:0015979 GO:0016020 GO:0019222 GO:0019362 GO:0019637 GO:0019684 GO:0022900 GO:0030093 GO:0031323 GO:0031647 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034641 GO:0042548 GO:0042550 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0050789 GO:0050794 GO:0050821 GO:0051186 GO:0055035 GO:0055086 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072524 GO:0098796 GO:0098807 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PSI_PSAK

Protein Analysis

159

Amino Acids

17.21

Weight (kDa)

9.63

Isoelectric Point (pI)

48.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSI_PSAK	PF01241	63 - 153	4.7e-22	Photosystem I psaG / psaK

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015509)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55670
fragaria_vesca	FvH4_3g41620
malus_domestica	MD03G1042800.v1.1
prunus_persica	Prupe.6G035200_v2.0.a1
pyrus_communis	pycom03g03300
rosa_chinensis	RchiOBHm_Chr5g0074661
rosa_laevigata	RLG00000036495
rosa_multiflora	Rmu_sc0000909.1_g000028 Rmu_sc0008028.1_g000002
rosa_roxburghii	Rroxscaffold_1G00006880
rosa_rugosa	Rorug05G0433500
rosa_samantha	Rh5AG490600 Rh5BG511700 Rh5CG535500 Rh5DG524100
rosa_wichuraiana	Rw5G045440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	455
AdeI	CACNNNGTG	1 cut(s)	421
AfiI	CCNNNNNNNGG	3 cut(s)	48, 102, 193
AgsI	TTSAA	3 cut(s)	250, 379, 408
AjnI	CCWGG	2 cut(s)	101, 326
AjuI	GAANNNNNNNTTGG	2 cut(s)	116, 148
AluBI	AGCT	4 cut(s)	8, 132, 176, 181
AluI	AGCT	4 cut(s)	8, 132, 176, 181
AlwI	GGATC	1 cut(s)	455
AoxI	GGCC	2 cut(s)	50, 85
ApeKI	GCWGC	2 cut(s)	5, 110
AsuHPI	GGTGA	4 cut(s)	27, 54, 91, 332
BanII	GRGCYC	1 cut(s)	188
BbvCI	CCTCAGC	1 cut(s)	206
BbvI	GCAGC	2 cut(s)	17, 122
BccI	CCATC	1 cut(s)	50
BciT130I	CCWGG	2 cut(s)	103, 328
BfmI	CTRYAG	1 cut(s)	108
BisI	GCNGC	2 cut(s)	6, 111
BlpI	GCTNAGC	2 cut(s)	177, 182
BlsI	GCNGC	2 cut(s)	7, 112
Bme1390I	CCNGG	2 cut(s)	103, 328
BmrFI	CCNGG	2 cut(s)	103, 328
BmrI	ACTGGG	1 cut(s)	362
BmuI	ACTGGG	1 cut(s)	362
BpmI	CTGGAG	1 cut(s)	430
Bpu10I	CCTNAGC	3 cut(s)	206, 288, 333
Bpu1102I	GCTNAGC	2 cut(s)	177, 182
BpuEI	CTTGAG	1 cut(s)	338
BsaJI	CCNNGG	2 cut(s)	82, 327
Bsc4I	CCNNNNNNNGG	3 cut(s)	48, 102, 193
Bse1I	ACTGG	1 cut(s)	368
Bse3DI	GCAATG	1 cut(s)	457
BseBI	CCWGG	2 cut(s)	103, 328
BseDI	CCNNGG	2 cut(s)	82, 327
BseGI	GGATG	1 cut(s)	394
BseLI	CCNNNNNNNGG	3 cut(s)	48, 102, 193
BseMI	GCAATG	1 cut(s)	457
BseMII	CTCAG	5 cut(s)	103, 168, 173, 220, 279
BseNI	ACTGG	1 cut(s)	368
BseRI	GAGGAG	2 cut(s)	7, 341
BseXI	GCAGC	2 cut(s)	17, 122
BsgI	GTGCAG	1 cut(s)	123
BshFI	GGCC	2 cut(s)	52, 87
BslI	CCNNNNNNNGG	3 cut(s)	48, 102, 193
BsnI	GGCC	2 cut(s)	52, 87
Bsp1286I	GDGCHC	1 cut(s)	188
Bsp143I	GATC	2 cut(s)	155, 460
Bsp1720I	GCTNAGC	2 cut(s)	177, 182
BspANI	GGCC	2 cut(s)	52, 87
BspCNI	CTCAG	5 cut(s)	102, 169, 174, 219, 280
BspMAI	CTGCAG	1 cut(s)	112
BspPI	GGATC	1 cut(s)	455
BsrDI	GCAATG	1 cut(s)	457
BsrI	ACTGG	1 cut(s)	368
BssECI	CCNNGG	2 cut(s)	82, 327
BssMI	GATC	2 cut(s)	155, 460
BssT1I	CCWWGG	1 cut(s)	82
Bst2UI	CCWGG	2 cut(s)	103, 328
BstC8I	GCNNGC	1 cut(s)	284
BstDEI	CTNAG	6 cut(s)	89, 177, 182, 206, 288, 333
BstF5I	GGATG	1 cut(s)	394
BstKTI	GATC	2 cut(s)	158, 463
BstMBI	GATC	2 cut(s)	155, 460
BstNI	CCWGG	2 cut(s)	103, 328
BstSCI	CCNGG	2 cut(s)	101, 326
BstSFI	CTRYAG	1 cut(s)	108
BstV1I	GCAGC	2 cut(s)	17, 122
BsuRI	GGCC	2 cut(s)	52, 87
BtsCI	GGATG	1 cut(s)	394
BtsI	GCAGTG	1 cut(s)	135
BtsIMutI	CAGTG	1 cut(s)	135
Cac8I	GCNNGC	1 cut(s)	284
CsiI	ACCWGGT	1 cut(s)	101
DdeI	CTNAG	6 cut(s)	89, 177, 182, 206, 288, 333
DpnI	GATC	2 cut(s)	157, 462
DpnII	GATC	2 cut(s)	155, 460
DraIII	CACNNNGTG	1 cut(s)	421
Eco130I	CCWWGG	1 cut(s)	82
Eco147I	AGGCCT	1 cut(s)	87
Eco24I	GRGCYC	1 cut(s)	188
EcoRII	CCWGG	2 cut(s)	101, 326
EcoT14I	CCWWGG	1 cut(s)	82
EcoT38I	GRGCYC	1 cut(s)	188
ErhI	CCWWGG	1 cut(s)	82
FaiI	YATR	4 cut(s)	200, 342, 419, 459
FalI	AAGNNNNNCTT	2 cut(s)	116, 148
Fnu4HI	GCNGC	2 cut(s)	6, 111
FokI	GGATG	1 cut(s)	401
FriOI	GRGCYC	1 cut(s)	188
Fsp4HI	GCNGC	2 cut(s)	6, 111
GluI	GCNGC	2 cut(s)	6, 111
GsuI	CTGGAG	1 cut(s)	430
HaeIII	GGCC	2 cut(s)	52, 87
HinfI	GANTC	2 cut(s)	304, 375
HphI	GGTGA	4 cut(s)	27, 54, 91, 332
Hpy188I	TCNGA	1 cut(s)	92
Hpy188III	TCNNGA	1 cut(s)	256
HpyAV	CCTTC	1 cut(s)	88
HpyCH4V	TGCA	2 cut(s)	110, 140
HpyF3I	CTNAG	6 cut(s)	89, 177, 182, 206, 288, 333
Kzo9I	GATC	2 cut(s)	155, 460
Lsp1109I	GCAGC	2 cut(s)	17, 122
MabI	ACCWGGT	1 cut(s)	101
MaeIII	GTNAC	3 cut(s)	301, 320, 413
MalI	GATC	2 cut(s)	157, 462
MboI	GATC	2 cut(s)	155, 460
MboII	GAAGA	2 cut(s)	3, 238
MfeI	CAATTG	1 cut(s)	408
MhlI	GDGCHC	1 cut(s)	188
MluCI	AATT	1 cut(s)	408
MlyI	GAGTC	1 cut(s)	298
MmeI	TCCRAC	1 cut(s)	352
MspR9I	CCNGG	2 cut(s)	103, 328
MunI	CAATTG	1 cut(s)	408
MvaI	CCWGG	2 cut(s)	103, 328
NdeII	GATC	2 cut(s)	155, 460
NmuCI	GTSAC	3 cut(s)	301, 320, 413
PceI	AGGCCT	1 cut(s)	87
PfeI	GAWTC	1 cut(s)	375
PkrI	GCNGC	2 cut(s)	7, 112
PleI	GAGTC	1 cut(s)	298
PpsI	GAGTC	1 cut(s)	298
Psp6I	CCWGG	2 cut(s)	101, 326
PspGI	CCWGG	2 cut(s)	101, 326
PstI	CTGCAG	1 cut(s)	112
SatI	GCNGC	2 cut(s)	6, 111
Sau3AI	GATC	2 cut(s)	155, 460
SchI	GAGTC	1 cut(s)	298
ScrFI	CCNGG	2 cut(s)	103, 328
SduI	GDGCHC	1 cut(s)	188
SexAI	ACCWGGT	1 cut(s)	101
SfcI	CTRYAG	1 cut(s)	108
SmlI	CTYRAG	1 cut(s)	353
SmoI	CTYRAG	1 cut(s)	353
Sse9I	AATT	1 cut(s)	408
SseBI	AGGCCT	1 cut(s)	87
StuI	AGGCCT	1 cut(s)	87
StyD4I	CCNGG	2 cut(s)	101, 326
StyI	CCWWGG	1 cut(s)	82
TaqI	TCGA	1 cut(s)	312
TasI	AATT	1 cut(s)	408
TfiI	GAWTC	1 cut(s)	375
TscAI	CASTG	1 cut(s)	142
TseFI	GTSAC	3 cut(s)	301, 320, 413
TseI	GCWGC	2 cut(s)	5, 110
Tsp45I	GTSAC	3 cut(s)	301, 320, 413
TspRI	CASTG	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.