AT1G59740

POT family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0009913
Physical Location & Seq
Forward (+)
21967986 .. 21972503
4518 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G59740.1

Sequence Viewer

Length: 1776 bp
ATGGCAGAGATAAACAAACAAAGCAACAAATGGGAACAAGAAGAGGTTAGTAATGAAAATAATTGGGAATTGGCTGAAGAAGAAAGTGTTGACTGGAGAGGGAGACCTTCCAACCCTAACAAGCATGGTGGAATGAGAGCTGCTCTCTTTGTTCTTGGACTACAAGCCTTTGAGATAATGGGGATAGCAGCAGTAGGGAACAACCTTATAACTTATGTAATAAACGAAATGCATTTCCCTTTGTCTAAAGCGGCCAATATTGTTACCAACTTTGTCGGTACCATCTTTATCTTTGCCCTTCTCGGCGGCTATCTCTCGGACGCCTTTCTAGGCAGCTTCTGGACCATTATCATATTCGGCTTCGTCGAGCTTTCTGGTTTCATACTACTATCAGTACAAGCACATTTACCCCAACTAAAGCCACCAAAATGTAACCCATTGATAGACCAAACATGTGAAGAAGCCAAAGGTTTCAAGGCAATGATCTTCTTCATGGCACTCTACTTGGTGGCTTTAGGAAGTGGCTGCGTGAAACCAAACATGATAGCTCACGGTGCGGACCAGTTCTCTCAGTCGCATCCTAAACAATCTAAAAGACTGTCATCTTACTTCAATGCTGCCTATTTTGCATTCTCAATGGGCGAGCTTATCGCTCTAACTCTCCTTGTTTGGGTTCAAACTCATTCGGGCATGGACATTGGATTTGGAGTCTCTGCTGCAGCGATGACTATGGGCATCATTAGCTTAGTCTCCGGTACTATGTATTTTCGTAACAAACGTCCACGTCGAAGCATCTTCACTCCCATTGCCCATGTTATTGTGGCTGCCATATTAAAAAGAAAGCTTGCGTCTCCCTCTGACCCAAGAATGCTCCATGGAGACCACCATGTCGCAAACGACGTCGTACCCTCCTCCACTTTACCACACACTCCTCGTTTCAGGTTCTTGGACAAGGCATGCATCAAAATCCAAGACACAAACACAAAGGAGAGTCCATGGAGGCTATGCACAGTAACACAAGTAGAGCAAGTAAAAACCCTAATCTCACTTGTCCCTATCTTTGCAAGCACCATAGTCTTCAACACCATCTTGGCACAGCTCCAAACGTTTTCAGTCCAACAAGGAAGTTCCATGAACACTCGTCTCTCAAATTCCTTCCACATCCCTCCGGCTTCACTCCAGGCCATCCCTTACATAATGCTCATATTCCTTGTCCCTCTCTACGACTCTTTCTTAGTCCCTTTTGCACGTAAGCTCACAGGACATAACTCAGGTATTCCTCCATTGACTCGGATAGGAATTGGACTCTTCCTCTCCACTTTCTCCATGGTTTCAGCTGCCATGCTCGAGAAGAAACGTAGAGACTCTTCGGTTCTTGACGGTAGAATCTTGAGTATCTTCTGGATCACGCCACAGTTCTTGATCTTTGGTATCTCCGAGATGTTTACAGCTGTTGGATTAATCGAGTTTTTTTACAAGCAATCTGCAAAGGGCATGGAATCATTCTTGATGGCATTGACTTATTGTTCCTACTCCTTTGGGTTTTACTTCAGCTCGGTGCTCGTTTCGGTCGTAAACAAGATCACTTCCACGTCAGTCGACTCTAAAGGGTGGCTCGGGGAGAACGACCTAAATAAGGACAGGCTCGATCTATTTTACTGGCTTTTAGCGGTTCTTAGTCTCTTGAACTTTCTTAGCTATCTCTTTTGGTCTCGTTGGAACATTAAGTCTTCGAGACGCAACAACACTAATGTTGTGGGTGATGAGAACATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0016020 GO:0043207 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

591

Amino Acids

66.04

Weight (kDa)

9.1

Isoelectric Point (pI)

43.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 113 - 538 3.9e-91 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009913)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G59740
fragaria_vesca FvH4_5g27820 FvH4_5g27820 FvH4_5g27820
malus_domestica MD08G1248200.v1.1 MD15G1443100.v1.1
prunus_persica Prupe.1G585400_v2.0.a1
pyrus_communis pycom08g21500 pycom15g39080
rosa_chinensis RchiOBHm_Chr7g0219651
rosa_laevigata RLG00000002280
rosa_multiflora Rmu_sc0001828.1_g000003
rosa_roxburghii Rroxscaffold_3G00239960
rosa_rugosa Rorug07G0186700
rosa_samantha Rh1BG165700 Rh1DG196300 Rh7AG330500 Rh7BG320300 Rh7CG347800 Rh7DG325800
rosa_wichuraiana Rw7G027820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 209
AasI GACNNNNNNGTC 1 cut(s) 887
AatII GACGTC 1 cut(s) 903
Acc65I GGTACC 1 cut(s) 278
AccB1I GGYRCC 1 cut(s) 278
AccI GTMKAC 1 cut(s) 1599
AciI CCGC 4 cut(s) 251, 306, 557, 1670
AclI AACGTT 1 cut(s) 1106
AclWI GGATC 1 cut(s) 1412
AcoI YGGCCR 1 cut(s) 252
AcsI RAATTY 1 cut(s) 1150
AcuI CTGAAG 2 cut(s) 96, 1534
AcyI GRCGYC 2 cut(s) 321, 900
AfaI GTAC 4 cut(s) 280, 396, 757, 906
AfiI CCNNNNNNNGG 2 cut(s) 670, 1636
AflIII ACRYGT 1 cut(s) 452
AgsI TTSAA 5 cut(s) 475, 613, 677, 1081, 1687
AjiI CACGTC 2 cut(s) 785, 1593
AjnI CCWGG 1 cut(s) 1179
Alw21I GWGCWC 1 cut(s) 1563
AlwI GGATC 1 cut(s) 1412
AlwNI CAGNNNCTG 1 cut(s) 339
Ama87I CYCGRG 2 cut(s) 1346, 1616
AoxI GGCC 2 cut(s) 252, 1182
ApeKI GCWGC 9 cut(s) 140, 188, 333, 525, 617, 716, 719, 824, 1337
ApoI RAATTY 1 cut(s) 1150
ArsI GACNNNNNNTTYG 2 cut(s) 686, 718
AseI ATTAAT 1 cut(s) 1460
Asp718I GGTACC 1 cut(s) 278
AspS9I GGNCC 2 cut(s) 342, 559
AsuHPI GGTGA 1 cut(s) 1772
AvaI CYCGRG 2 cut(s) 1346, 1616
AvaII GGWCC 2 cut(s) 342, 559
BanI GGYRCC 1 cut(s) 278
BarI GAAGNNNNNNTAC 2 cut(s) 1351, 1383
BbsI GAAGAC 2 cut(s) 1069, 1722
Bbv12I GWGCWC 1 cut(s) 1563
BbvI GCAGC 9 cut(s) 127, 200, 345, 512, 604, 703, 731, 811, 1324
BccI CCATC 4 cut(s) 290, 1094, 1193, 1504
BciT130I CCWGG 1 cut(s) 1181
BfaI CTAG 1 cut(s) 329
BfmI CTRYAG 1 cut(s) 717
Bme1390I CCNGG 1 cut(s) 1181
Bme18I GGWCC 2 cut(s) 342, 559
BmeT110I CYCGRG 2 cut(s) 1346, 1616
BmgBI CACGTC 2 cut(s) 785, 1593
BmgT120I GGNCC 2 cut(s) 342, 559
BmiI GGNNCC 1 cut(s) 280
BmrFI CCNGG 1 cut(s) 1181
BmsI GCATC 4 cut(s) 586, 744, 801, 969
BpiI GAAGAC 2 cut(s) 1069, 1722
BplI GAGNNNNNCTC 4 cut(s) 127, 159, 129, 161
BpmI CTGGAG 2 cut(s) 115, 1163
BpuEI CTTGAG 1 cut(s) 1411
BsaAI YACGTR 1 cut(s) 1250
BsaHI GRCGYC 2 cut(s) 321, 900
BsaI GGTCTC 3 cut(s) 97, 873, 1716
BsaJI CCNNGG 3 cut(s) 874, 995, 1326
BsaWI WCCGGW 1 cut(s) 752
Bsc4I CCNNNNNNNGG 2 cut(s) 670, 1636
Bse1I ACTGG 3 cut(s) 98, 562, 1664
Bse3DI GCAATG 2 cut(s) 486, 804
BseBI CCWGG 1 cut(s) 1181
BseDI CCNNGG 3 cut(s) 874, 995, 1326
BseGI GGATG 3 cut(s) 577, 1161, 1185
BseLI CCNNNNNNNGG 2 cut(s) 670, 1636
BseMI GCAATG 2 cut(s) 486, 804
BseMII CTCAG 2 cut(s) 584, 1284
BseNI ACTGG 3 cut(s) 98, 562, 1664
BseRI GAGGAG 2 cut(s) 901, 921
BseXI GCAGC 9 cut(s) 127, 200, 345, 512, 604, 703, 731, 811, 1324
Bsh1285I CGRYCG 1 cut(s) 1572
BshFI GGCC 2 cut(s) 254, 1184
BshNI GGYRCC 1 cut(s) 278
BsiEI CGRYCG 1 cut(s) 1572
BsiHKAI GWGCWC 1 cut(s) 1563
BsiHKCI CYCGRG 2 cut(s) 1346, 1616
BsiSI CCGG 2 cut(s) 753, 1169
BslFI GGGAC 3 cut(s) 1037, 1199, 1223
BslI CCNNNNNNNGG 2 cut(s) 670, 1636
BsmBI CGTCTC 3 cut(s) 855, 1148, 1729
BsmFI GGGAC 3 cut(s) 1037, 1199, 1223
BsmI GAATGC 2 cut(s) 629, 873
BsnI GGCC 2 cut(s) 254, 1184
Bso31I GGTCTC 3 cut(s) 97, 873, 1716
BsoBI CYCGRG 2 cut(s) 1346, 1616
Bsp1286I GDGCHC 1 cut(s) 1563
Bsp143I GATC 5 cut(s) 483, 1404, 1422, 1581, 1648
Bsp19I CCATGG 3 cut(s) 874, 995, 1326
BspACI CCGC 4 cut(s) 251, 306, 557, 1670
BspANI GGCC 2 cut(s) 254, 1184
BspCNI CTCAG 2 cut(s) 583, 1283
BspLI GGNNCC 1 cut(s) 280
BspMAI CTGCAG 1 cut(s) 721
BspPI GGATC 1 cut(s) 1412
BspT107I GGYRCC 1 cut(s) 278
BspTNI GGTCTC 3 cut(s) 97, 873, 1716
BsrDI GCAATG 2 cut(s) 486, 804
BsrI ACTGG 3 cut(s) 98, 562, 1664
BssECI CCNNGG 3 cut(s) 874, 995, 1326
BssMI GATC 5 cut(s) 483, 1404, 1422, 1581, 1648
BssNI GRCGYC 2 cut(s) 321, 900
BssT1I CCWWGG 3 cut(s) 874, 995, 1326
Bst2UI CCWGG 1 cut(s) 1181
Bst4CI ACNGT 5 cut(s) 554, 600, 1012, 1382, 1416
Bst6I CTCTTC 3 cut(s) 36, 1313, 1372
BstACI GRCGYC 2 cut(s) 321, 900
BstBAI YACGTR 1 cut(s) 1250
BstC8I GCNNGC 4 cut(s) 644, 846, 958, 1066
BstDEI CTNAG 6 cut(s) 570, 745, 1234, 1270, 1676, 1694
BstDSI CCRYGG 3 cut(s) 874, 995, 1326
BstENI CCTNNNNNAGG 1 cut(s) 1634
BstF5I GGATG 3 cut(s) 577, 1161, 1185
BstKTI GATC 5 cut(s) 486, 1407, 1425, 1584, 1651
BstMBI GATC 5 cut(s) 483, 1404, 1422, 1581, 1648
BstMCI CGRYCG 1 cut(s) 1572
BstMWI GCNNNNNNNGC 3 cut(s) 554, 626, 741
BstNI CCWGG 1 cut(s) 1181
BstNSI RCATGY 2 cut(s) 456, 960
BstSCI CCNGG 1 cut(s) 1179
BstSFI CTRYAG 1 cut(s) 717
BstV1I GCAGC 9 cut(s) 127, 200, 345, 512, 604, 703, 731, 811, 1324
BstV2I GAAGAC 2 cut(s) 1069, 1722
BsuRI GGCC 2 cut(s) 254, 1184
BtgI CCRYGG 3 cut(s) 874, 995, 1326
BtgZI GCGATG 1 cut(s) 737
BtrI CACGTC 2 cut(s) 785, 1593
BtsCI GGATG 3 cut(s) 577, 1161, 1185
Cac8I GCNNGC 4 cut(s) 644, 846, 958, 1066
CaiI CAGNNNCTG 1 cut(s) 339
Cfr13I GGNCC 2 cut(s) 342, 559
CseI GACGC 3 cut(s) 329, 837, 1746
Csp6I GTAC 4 cut(s) 279, 395, 756, 905
CspCI CAANNNNNGTGG 4 cut(s) 109, 144, 1401, 1436
CviQI GTAC 4 cut(s) 279, 395, 756, 905
DdeI CTNAG 6 cut(s) 570, 745, 1234, 1270, 1676, 1694
DpnI GATC 5 cut(s) 485, 1406, 1424, 1583, 1650
DpnII GATC 5 cut(s) 483, 1404, 1422, 1581, 1648
DrdI GACNNNNNNGTC 1 cut(s) 887
DseDI GACNNNNNNGTC 1 cut(s) 887
EaeI YGGCCR 1 cut(s) 252
Eam1104I CTCTTC 3 cut(s) 36, 1313, 1372
EarI CTCTTC 3 cut(s) 36, 1313, 1372
Eco130I CCWWGG 3 cut(s) 874, 995, 1326
Eco31I GGTCTC 3 cut(s) 97, 873, 1716
Eco47I GGWCC 2 cut(s) 342, 559
Eco57I CTGAAG 2 cut(s) 96, 1534
Eco88I CYCGRG 2 cut(s) 1346, 1616
EcoNI CCTNNNNNAGG 1 cut(s) 1634
EcoRII CCWGG 1 cut(s) 1179
EcoT14I CCWWGG 3 cut(s) 874, 995, 1326
EcoT22I ATGCAT 2 cut(s) 234, 962
ErhI CCWWGG 3 cut(s) 874, 995, 1326
Esp3I CGTCTC 3 cut(s) 855, 1148, 1729
FaqI GGGAC 3 cut(s) 1037, 1199, 1223
FblI GTMKAC 1 cut(s) 1599
FokI GGATG 3 cut(s) 564, 1148, 1172
FspBI CTAG 1 cut(s) 329
GsuI CTGGAG 2 cut(s) 115, 1163
HaeIII GGCC 2 cut(s) 254, 1184
HapII CCGG 2 cut(s) 753, 1169
HgaI GACGC 3 cut(s) 329, 837, 1746
Hin1I GRCGYC 2 cut(s) 321, 900
HincII GTYRAC 2 cut(s) 91, 1600
HindII GTYRAC 2 cut(s) 91, 1600
HindIII AAGCTT 1 cut(s) 842
HinfI GANTC 9 cut(s) 708, 991, 1226, 1288, 1305, 1364, 1386, 1499, 1601
HpaII CCGG 2 cut(s) 753, 1169
HphI GGTGA 1 cut(s) 1772
Hpy166II GTNNAC 5 cut(s) 91, 782, 1446, 1576, 1600
Hpy188I TCNGA 4 cut(s) 319, 859, 1293, 1438
Hpy188III TCNNGA 9 cut(s) 340, 1348, 1376, 1390, 1402, 1420, 1507, 1684, 1734
Hpy8I GTNNAC 5 cut(s) 91, 782, 1446, 1576, 1600
Hpy99I CGWCG 4 cut(s) 368, 789, 902, 905
HpyAV CCTTC 3 cut(s) 117, 308, 1165
HpyCH4III ACNGT 5 cut(s) 554, 600, 1012, 1382, 1416
HpyCH4IV ACGT 7 cut(s) 778, 784, 900, 1106, 1249, 1357, 1592
HpyCH4V TGCA 8 cut(s) 232, 629, 719, 960, 1008, 1064, 1247, 1487
HpyF10VI GCNNNNNNNGC 3 cut(s) 554, 626, 741
HpyF3I CTNAG 6 cut(s) 570, 745, 1234, 1270, 1676, 1694
HpySE526I ACGT 7 cut(s) 778, 784, 900, 1106, 1249, 1357, 1592
Hsp92I GRCGYC 2 cut(s) 321, 900
KpnI GGTACC 1 cut(s) 282
Kzo9I GATC 5 cut(s) 483, 1404, 1422, 1581, 1648
LmnI GCTCC 2 cut(s) 876, 1104
Lsp1109I GCAGC 9 cut(s) 127, 200, 345, 512, 604, 703, 731, 811, 1324
LweI GCATC 4 cut(s) 586, 744, 801, 969
MaeI CTAG 1 cut(s) 329
MaeII ACGT 7 cut(s) 778, 784, 900, 1106, 1249, 1357, 1592
MaeIII GTNAC 4 cut(s) 262, 431, 770, 1012
MalI GATC 5 cut(s) 485, 1406, 1424, 1583, 1650
MboI GATC 5 cut(s) 483, 1404, 1422, 1581, 1648
MhlI GDGCHC 1 cut(s) 1563
MluCI AATT 4 cut(s) 61, 68, 1150, 1299
MlyI GAGTC 7 cut(s) 717, 1000, 1220, 1282, 1299, 1358, 1595
MmeI TCCRAC 4 cut(s) 135, 1141, 1435, 1697
Mph1103I ATGCAT 2 cut(s) 234, 962
MseI TTAA 3 cut(s) 833, 1460, 1725
MslI CAYNNNNRTG 1 cut(s) 427
MspA1I CMGCKG 2 cut(s) 1337, 1451
MspI CCGG 2 cut(s) 753, 1169
MspR9I CCNGG 1 cut(s) 1181
Mva1269I GAATGC 2 cut(s) 629, 873
MvaI CCWGG 1 cut(s) 1181
MwoI GCNNNNNNNGC 3 cut(s) 554, 626, 741
NcoI CCATGG 3 cut(s) 874, 995, 1326
NdeII GATC 5 cut(s) 483, 1404, 1422, 1581, 1648
NlaIV GGNNCC 1 cut(s) 280
NmeAIII GCCGAG 1 cut(s) 282
NsiI ATGCAT 2 cut(s) 234, 962
NspI RCATGY 2 cut(s) 456, 960
PaeI GCATGC 1 cut(s) 960
PaeR7I CTCGAG 1 cut(s) 1346
PciI ACATGT 1 cut(s) 452
PcsI WCGNNNNNNNCGW 6 cut(s) 363, 775, 784, 897, 1569, 1623
PctI GAATGC 2 cut(s) 629, 873
PfeI GAWTC 2 cut(s) 1386, 1499
PleI GAGTC 7 cut(s) 716, 999, 1220, 1282, 1299, 1358, 1595
PpsI GAGTC 7 cut(s) 716, 999, 1220, 1282, 1299, 1358, 1595
Ppu21I YACGTR 1 cut(s) 1250
PscI ACATGT 1 cut(s) 452
PshBI ATTAAT 1 cut(s) 1460
PsiI TTATAA 1 cut(s) 209
Psp1406I AACGTT 1 cut(s) 1106
Psp6I CCWGG 1 cut(s) 1179
PspGI CCWGG 1 cut(s) 1179
PspN4I GGNNCC 1 cut(s) 280
PspPI GGNCC 2 cut(s) 342, 559
PstI CTGCAG 1 cut(s) 721
PstNI CAGNNNCTG 1 cut(s) 339
PvuII CAGCTG 2 cut(s) 1337, 1451
RsaI GTAC 4 cut(s) 280, 396, 757, 906
RsaNI GTAC 4 cut(s) 279, 395, 756, 905
RseI CAYNNNNRTG 1 cut(s) 427
SalI GTCGAC 1 cut(s) 1598
SaqAI TTAA 3 cut(s) 833, 1460, 1725
Sau3AI GATC 5 cut(s) 483, 1404, 1422, 1581, 1648
Sau96I GGNCC 2 cut(s) 342, 559
SchI GAGTC 7 cut(s) 717, 1000, 1220, 1282, 1299, 1358, 1595
ScrFI CCNGG 1 cut(s) 1181
SduI GDGCHC 1 cut(s) 1563
SfaNI GCATC 4 cut(s) 586, 744, 801, 969
SfcI CTRYAG 1 cut(s) 717
Sfr274I CTCGAG 1 cut(s) 1346
SinI GGWCC 2 cut(s) 342, 559
SlaI CTCGAG 1 cut(s) 1346
SmiMI CAYNNNNRTG 1 cut(s) 427
SmlI CTYRAG 2 cut(s) 1346, 1390
SmoI CTYRAG 2 cut(s) 1346, 1390
SphI GCATGC 1 cut(s) 960
Sse9I AATT 4 cut(s) 61, 68, 1150, 1299
SsiI CCGC 4 cut(s) 251, 306, 557, 1670
SspI AATATT 1 cut(s) 259
SspMI CTAG 1 cut(s) 329
StyD4I CCNGG 1 cut(s) 1179
StyI CCWWGG 3 cut(s) 874, 995, 1326
TaaI ACNGT 5 cut(s) 554, 600, 1012, 1382, 1416
TaiI ACGT 7 cut(s) 781, 787, 903, 1109, 1252, 1360, 1595
TaqI TCGA 7 cut(s) 366, 787, 1347, 1464, 1599, 1647, 1733
TaqII GACCGA 1 cut(s) 1558
TasI AATT 4 cut(s) 61, 68, 1150, 1299
TatI WGTACW 1 cut(s) 394
TauI GCSGC 2 cut(s) 254, 309
TfiI GAWTC 2 cut(s) 1386, 1499
Tru1I TTAA 3 cut(s) 833, 1460, 1725
Tru9I TTAA 3 cut(s) 833, 1460, 1725
TseI GCWGC 9 cut(s) 140, 188, 333, 525, 617, 716, 719, 824, 1337
TspDTI ATGAA 4 cut(s) 69, 370, 481, 1148
VpaK11BI GGWCC 2 cut(s) 342, 559
VspI ATTAAT 1 cut(s) 1460
XagI CCTNNNNNAGG 1 cut(s) 1634
XapI RAATTY 1 cut(s) 1150
XceI RCATGY 2 cut(s) 456, 960
XcmI CCANNNNNNNNNTGG 1 cut(s) 1324
XhoI CTCGAG 1 cut(s) 1346
XmiI GTMKAC 1 cut(s) 1599
XspI CTAG 1 cut(s) 329
ZraI GACGTC 1 cut(s) 901
Zsp2I ATGCAT 2 cut(s) 234, 962
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.