MD08G1248200.v1.1

Protein NRT1 PTR FAMILY 4.3-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Forward (+)
31226687 .. 31231330
4644 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1248200.v1.1.491

Sequence Viewer

Length: 1842 bp
ATGGAACAAAGGAGGCAGAACCACAAAGTTGAGGCCATTGACACATCTGAAATGGCGGAAGAGATGACTGTTGATTGGAGAGGCAGACCTTCCAATCCTACCAAGCATGGTGGCATGAGAGCTGCTGCATTTGTTCTTGGGCTTCAATCATTTGAGATAATGGGAATTGCTGCAGTTGGGAACAACCTCATAACATACGTGATAAATGAGATGCACTTTTCTCTGTCAAATTCGGCCAACGTAGTGACGAACTTTATTGGAACTGTCTTTCTCTTAGCCCTTGTTGGTGGCTACGTCTCCGATTCTTATCTTGGGAGTTTCTGGACCATGCTTATCTTTGGTTTTGTGGAACTTTCGGGTTTCATATTATTGTCAGTCCAAGCTCATGTTCCGCAGCTAAAGCCACCCCCATGCAACGTTAATAACGGAGAGGAGTGTGTAGAGGCAAAAGGGTTCAAGTCACTAATCTTCTTCGTAGCACTTTACTTGGTGGCATTGGGAAGTGGCTGTGTGAAGCCTAACATGATTGCTCACGGGGCTGACCAGTTCAACCCAGATGACCCAAAGCAGTCCAAGAAACTCTCCACCTATTTCAATGCTGCCTACTTTGCCTTTTCCATGGGTGAACTCGTCGCCCTCACTCTTCTCGTGTGGGTCCAAACTCACTCTGGAATGGATGTTGGCTTTGGAGTCTCAGCAGCCGCCATGGCGATGGGGTTGATCAGCTTGGTTTCTGGCACCCTATATTACAGGAACAAACGACCTCAAGGAAGCATACTCACTCCCATTGCTCAAGTTTTTGTGGCTGCAATACTAAAGAGAAAGCAGGTCTGTCCATCTAATCCACAGATGCTTCATGGAAGCCAAAACAATGCGCTAAATGACAATGCTACTTTCTCTTCTGACGCTGGCAGCTTTCTTCACACTGAAAAGTTCAGGTTCTTGGACAAGGCCTGCATTAAAATTCAAGATCGCACTAACTCAAAGGAAAGTCCGTGGAGATTGTGCACCGTTACTCAAGTGAAGCAAGTAAAAATACTTCTTTCAGTCATCCCAATTTTTGCTTCCACCATAATTTTCAACACAATTTTGGCTCAGCTCCAAACTTTCTCGGTCCAACAAGGAAGTATGATGAACACCAAGCTAACCAAATCCTTCCATATCCCTCCAGCTTCACTTCAATCCATCCCTTACATCATTCTTCTCATCCTTGTCCCTCTCTATGACACTTTCTTTGTTCCATTTGCTCGAAAATTCACCGGTCACGATTCCGGTATCTCCCCATTAATGAGAATAGGGTTTGGACTCTTTTTTGCGACGTTTTCGATGATCGCGGCTGCCATCATGGAGGAAAAGAGAAGGGATGCAGCTATACATTCGAACCAAATAATTTCCATTTTTTGGATCACCCCACAATTCTTGATCTTTGGATTATCGGAAATGCTCACTGCCGTAGGCCTCATTGAGTTCTTTTACAAACAATCCTTGAAAGGGATGCAAGCATTTTTAACTGCCTTGACCTATTGCTCCTATTCATTTGGGTTTTACCTGAGCTCCCTGCTCGTCTCTCTGGTGAATAAGATCACAACATCCTCAGGTGGTGGGGTTGGTGGTGGTTGGCTGGGTGACAATAATCTCAACAAAGACAGACTGGACCTTTTCTATTGGTTGCTGGCAGGCCTCAGCTTCCTCAACTTCCTCAACTATCTATTTTGGTCTCACTGGTACTCTCACACCCCGTCATCTTCATCAGCACCAAGTGCACTACCCCAGCTGCATGGTCATGACACTGCTCGCACGGAGGATTATAACCATCATAGACTGGATGATAATATACCATAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

614

Amino Acids

67.84

Weight (kDa)

8.51

Isoelectric Point (pI)

37.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 107 - 531 6.6e-93 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0009913)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1809
Acc36I ACCTGC 1 cut(s) 817
AccB1I GGYRCC 1 cut(s) 737
AccB7I CCANNNNNTGG 1 cut(s) 1401
AccII CGCG 1 cut(s) 1334
AciI CCGC 4 cut(s) 56, 392, 702, 1334
AclI AACGTT 1 cut(s) 417
AclWI GGATC 1 cut(s) 1412
AcoI YGGCCR 1 cut(s) 234
AcsI RAATTY 3 cut(s) 229, 963, 1253
AdeI CACNNNGTG 1 cut(s) 1760
AfaI GTAC 1 cut(s) 1727
AfiI CCNNNNNNNGG 2 cut(s) 1401, 1491
AgeI ACCGGT 1 cut(s) 1259
AgsI TTSAA 8 cut(s) 146, 457, 550, 595, 968, 1081, 1181, 1489
AjuI GAANNNNNNNTTGG 4 cut(s) 372, 404, 1048, 1080
Alw21I GWGCWC 3 cut(s) 1010, 1556, 1765
Alw26I GTCTC 4 cut(s) 301, 697, 1570, 1722
Alw44I GTGCAC 2 cut(s) 1006, 1761
AlwI GGATC 1 cut(s) 1412
AoxI GGCC 5 cut(s) 33, 234, 951, 1456, 1678
ApaLI GTGCAC 2 cut(s) 1006, 1761
ApoI RAATTY 3 cut(s) 229, 963, 1253
ArsI GACNNNNNNTTYG 2 cut(s) 1217, 1249
AseI ATTAAT 1 cut(s) 1286
AsiGI ACCGGT 1 cut(s) 1259
AspLEI GCGC 1 cut(s) 877
AspS9I GGNCC 4 cut(s) 324, 655, 1114, 1654
AsuHPI GGTGA 5 cut(s) 635, 1249, 1399, 1585, 1637
AsuII TTCGAA 1 cut(s) 1379
AvaII GGWCC 4 cut(s) 324, 655, 1114, 1654
AxyI CCTNAGG 1 cut(s) 1594
BaeGI GKGCMC 2 cut(s) 1010, 1765
BanI GGYRCC 1 cut(s) 737
BanII GRGCYC 1 cut(s) 1556
BarI GAAGNNNNNNTAC 2 cut(s) 1023, 1055
BauI CACGAG 1 cut(s) 647
Bbv12I GWGCWC 3 cut(s) 1010, 1556, 1765
BbvCI CCTCAGC 1 cut(s) 1682
BccI CCATC 5 cut(s) 706, 844, 1193, 1349, 1821
BceAI ACGGC 1 cut(s) 1436
BclI TGATCA 1 cut(s) 720
BcoDI GTCTC 4 cut(s) 301, 697, 1570, 1722
BfmI CTRYAG 1 cut(s) 171
BfuAI ACCTGC 1 cut(s) 817
BglI GCCNNNNNGGC 1 cut(s) 707
BlpI GCTNAGC 1 cut(s) 1095
Bme18I GGWCC 4 cut(s) 324, 655, 1114, 1654
BmgT120I GGNCC 4 cut(s) 324, 655, 1114, 1654
BmiI GGNNCC 2 cut(s) 656, 739
BmsI GCATC 4 cut(s) 201, 840, 1354, 1485
BpmI CTGGAG 1 cut(s) 1152
Bpu10I CCTNAGC 2 cut(s) 1550, 1682
Bpu1102I GCTNAGC 1 cut(s) 1095
Bpu14I TTCGAA 1 cut(s) 1379
BpuEI CTTGAG 3 cut(s) 750, 777, 1002
BsaAI YACGTR 1 cut(s) 199
BsaBI GATNNNNATC 1 cut(s) 306
BsaI GGTCTC 1 cut(s) 1722
BsaJI CCNNGG 3 cut(s) 618, 705, 995
BsaWI WCCGGW 2 cut(s) 1259, 1271
BsaXI ACNNNNNCTCC 2 cut(s) 1538, 1568
Bsc4I CCNNNNNNNGG 2 cut(s) 1401, 1491
Bse118I RCCGGY 1 cut(s) 1259
Bse1I ACTGG 4 cut(s) 544, 1656, 1727, 1827
Bse21I CCTNAGG 1 cut(s) 1594
Bse3DI GCAATG 1 cut(s) 786
Bse8I GATNNNNATC 1 cut(s) 306
BseDI CCNNGG 3 cut(s) 618, 705, 995
BseGI GGATG 8 cut(s) 682, 1050, 1185, 1206, 1369, 1500, 1589, 1831
BseJI GATNNNNATC 1 cut(s) 306
BseLI CCNNNNNNNGG 2 cut(s) 1401, 1491
BseMI GCAATG 1 cut(s) 786
BseMII CTCAG 5 cut(s) 708, 1109, 1541, 1608, 1696
BseNI ACTGG 4 cut(s) 544, 1656, 1727, 1827
BseRI GAGGAG 1 cut(s) 446
BseSI GKGCMC 2 cut(s) 1010, 1765
BseYI CCCAGC 2 cut(s) 1621, 1770
Bsh1236I CGCG 1 cut(s) 1334
BshFI GGCC 5 cut(s) 35, 236, 953, 1458, 1680
BshNI GGYRCC 1 cut(s) 737
BshTI ACCGGT 1 cut(s) 1259
BsiHKAI GWGCWC 3 cut(s) 1010, 1556, 1765
BsiSI CCGG 2 cut(s) 1260, 1272
BslFI GGGAC 1 cut(s) 1199
BslI CCNNNNNNNGG 2 cut(s) 1401, 1491
BsmAI GTCTC 4 cut(s) 301, 697, 1570, 1722
BsmBI CGTCTC 2 cut(s) 301, 1570
BsmFI GGGAC 1 cut(s) 1199
BsnI GGCC 5 cut(s) 35, 236, 953, 1458, 1680
Bso31I GGTCTC 1 cut(s) 1722
Bsp119I TTCGAA 1 cut(s) 1379
Bsp1286I GDGCHC 3 cut(s) 1010, 1556, 1765
Bsp143I GATC 6 cut(s) 720, 970, 1329, 1404, 1422, 1581
Bsp1720I GCTNAGC 1 cut(s) 1095
Bsp19I CCATGG 2 cut(s) 618, 705
BspACI CCGC 4 cut(s) 56, 392, 702, 1334
BspANI GGCC 5 cut(s) 35, 236, 953, 1458, 1680
BspCNI CTCAG 5 cut(s) 707, 1108, 1542, 1607, 1695
BspFNI CGCG 1 cut(s) 1334
BspHI TCATGA 1 cut(s) 1783
BspLI GGNNCC 2 cut(s) 656, 739
BspMAI CTGCAG 1 cut(s) 175
BspMI ACCTGC 1 cut(s) 817
BspPI GGATC 1 cut(s) 1412
BspT104I TTCGAA 1 cut(s) 1379
BspT107I GGYRCC 1 cut(s) 737
BspTNI GGTCTC 1 cut(s) 1722
BsrDI GCAATG 1 cut(s) 786
BsrFI RCCGGY 1 cut(s) 1259
BsrI ACTGG 4 cut(s) 544, 1656, 1727, 1827
BssAI RCCGGY 1 cut(s) 1259
BssECI CCNNGG 3 cut(s) 618, 705, 995
BssMI GATC 6 cut(s) 720, 970, 1329, 1404, 1422, 1581
BssSI CACGAG 1 cut(s) 647
BssT1I CCWWGG 2 cut(s) 618, 705
Bst2BI CACGAG 1 cut(s) 647
Bst4CI ACNGT 3 cut(s) 70, 265, 1012
Bst6I CTCTTC 3 cut(s) 54, 648, 904
BstAPI GCANNNNNTGC 1 cut(s) 1760
BstBAI YACGTR 1 cut(s) 199
BstBI TTCGAA 1 cut(s) 1379
BstC8I GCNNGC 6 cut(s) 910, 955, 1500, 1674, 1678, 1795
BstDEI CTNAG 6 cut(s) 274, 694, 1095, 1550, 1594, 1682
BstDSI CCRYGG 3 cut(s) 618, 705, 995
BstF5I GGATG 8 cut(s) 682, 1050, 1185, 1206, 1369, 1500, 1589, 1831
BstFNI CGCG 1 cut(s) 1334
BstHHI GCGC 1 cut(s) 877
BstKTI GATC 6 cut(s) 723, 973, 1332, 1407, 1425, 1584
BstMAI GTCTC 4 cut(s) 301, 697, 1570, 1722
BstMBI GATC 6 cut(s) 720, 970, 1329, 1404, 1422, 1581
BstMWI GCNNNNNNNGC 5 cut(s) 400, 536, 608, 707, 1760
BstSFI CTRYAG 1 cut(s) 171
BstSLI GKGCMC 2 cut(s) 1010, 1765
BstUI CGCG 1 cut(s) 1334
BstXI CCANNNNNNTGG 2 cut(s) 712, 1778
Bsu36I CCTNAGG 1 cut(s) 1594
BsuRI GGCC 5 cut(s) 35, 236, 953, 1458, 1680
BtgI CCRYGG 3 cut(s) 618, 705, 995
BtgZI GCGATG 1 cut(s) 725
BtsCI GGATG 8 cut(s) 682, 1050, 1185, 1206, 1369, 1500, 1589, 1831
BtsI GCAGTG 2 cut(s) 1446, 1788
BtsIMutI CAGTG 4 cut(s) 924, 1446, 1720, 1788
BveI ACCTGC 1 cut(s) 817
Cac8I GCNNGC 6 cut(s) 910, 955, 1500, 1674, 1678, 1795
CciI TCATGA 1 cut(s) 1783
CfoI GCGC 1 cut(s) 877
Cfr10I RCCGGY 1 cut(s) 1259
Cfr13I GGNCC 4 cut(s) 324, 655, 1114, 1654
CseI GACGC 1 cut(s) 914
Csp6I GTAC 1 cut(s) 1726
CspAI ACCGGT 1 cut(s) 1259
CspCI CAANNNNNGTGG 4 cut(s) 91, 126, 1401, 1436
CviQI GTAC 1 cut(s) 1726
DdeI CTNAG 6 cut(s) 274, 694, 1095, 1550, 1594, 1682
DpnI GATC 6 cut(s) 722, 972, 1331, 1406, 1424, 1583
DpnII GATC 6 cut(s) 720, 970, 1329, 1404, 1422, 1581
DraIII CACNNNGTG 1 cut(s) 1760
EaeI YGGCCR 1 cut(s) 234
Eam1104I CTCTTC 3 cut(s) 54, 648, 904
EarI CTCTTC 3 cut(s) 54, 648, 904
EciI GGCGGA 1 cut(s) 71
Ecl136II GAGCTC 1 cut(s) 1554
Eco130I CCWWGG 2 cut(s) 618, 705
Eco147I AGGCCT 3 cut(s) 953, 1458, 1680
Eco24I GRGCYC 1 cut(s) 1556
Eco31I GGTCTC 1 cut(s) 1722
Eco47I GGWCC 4 cut(s) 324, 655, 1114, 1654
Eco53kI GAGCTC 1 cut(s) 1554
Eco81I CCTNAGG 1 cut(s) 1594
EcoICRI GAGCTC 1 cut(s) 1554
EcoT14I CCWWGG 2 cut(s) 618, 705
EcoT38I GRGCYC 1 cut(s) 1556
ErhI CCWWGG 2 cut(s) 618, 705
Esp3I CGTCTC 2 cut(s) 301, 1570
FaqI GGGAC 1 cut(s) 1199
FbaI TGATCA 1 cut(s) 720
FokI GGATG 8 cut(s) 689, 1037, 1172, 1193, 1376, 1507, 1576, 1838
FriOI GRGCYC 1 cut(s) 1556
GlaI GCGC 1 cut(s) 876
GsaI CCCAGC 2 cut(s) 1625, 1774
GsuI CTGGAG 1 cut(s) 1152
HaeIII GGCC 5 cut(s) 35, 236, 953, 1458, 1680
HapII CCGG 2 cut(s) 1260, 1272
HgaI GACGC 1 cut(s) 914
HhaI GCGC 1 cut(s) 877
Hin6I GCGC 1 cut(s) 875
HinP1I GCGC 1 cut(s) 875
HinfI GANTC 4 cut(s) 302, 690, 1268, 1305
HpaII CCGG 2 cut(s) 1260, 1272
HphI GGTGA 5 cut(s) 635, 1249, 1399, 1585, 1637
Hpy166II GTNNAC 3 cut(s) 626, 1008, 1763
Hpy188I TCNGA 4 cut(s) 49, 301, 904, 1438
Hpy188III TCNNGA 6 cut(s) 322, 669, 968, 1265, 1420, 1784
Hpy8I GTNNAC 3 cut(s) 626, 1008, 1763
Hpy99I CGWCG 2 cut(s) 635, 1321
HpyAV CCTTC 3 cut(s) 99, 1165, 1353
HpyCH4III ACNGT 3 cut(s) 70, 265, 1012
HpyCH4IV ACGT 5 cut(s) 198, 240, 294, 417, 1319
HpyF10VI GCNNNNNNNGC 5 cut(s) 400, 536, 608, 707, 1760
HpyF3I CTNAG 6 cut(s) 274, 694, 1095, 1550, 1594, 1682
HpySE526I ACGT 5 cut(s) 198, 240, 294, 417, 1319
HspAI GCGC 1 cut(s) 875
Ksp22I TGATCA 1 cut(s) 720
Kzo9I GATC 6 cut(s) 720, 970, 1329, 1404, 1422, 1581
LmnI GCTCC 3 cut(s) 1104, 1532, 1559
LweI GCATC 4 cut(s) 201, 840, 1354, 1485
MaeII ACGT 5 cut(s) 198, 240, 294, 417, 1319
MaeIII GTNAC 5 cut(s) 244, 459, 1012, 1262, 1625
MalI GATC 6 cut(s) 722, 972, 1331, 1406, 1424, 1583
MboI GATC 6 cut(s) 720, 970, 1329, 1404, 1422, 1581
MboII GAAGA 8 cut(s) 71, 460, 463, 635, 891, 911, 1193, 1737
MhlI GDGCHC 3 cut(s) 1010, 1556, 1765
MluCI AATT 9 cut(s) 165, 229, 963, 1056, 1074, 1086, 1253, 1389, 1415
MlyI GAGTC 2 cut(s) 699, 1299
MmeI TCCRAC 1 cut(s) 1141
MseI TTAA 4 cut(s) 420, 960, 1286, 1508
MslI CAYNNNNRTG 3 cut(s) 409, 710, 1782
MspA1I CMGCKG 1 cut(s) 1774
MspI CCGG 2 cut(s) 1260, 1272
MvnI CGCG 1 cut(s) 1334
MwoI GCNNNNNNNGC 5 cut(s) 400, 536, 608, 707, 1760
NcoI CCATGG 2 cut(s) 618, 705
NdeII GATC 6 cut(s) 720, 970, 1329, 1404, 1422, 1581
NlaIV GGNNCC 2 cut(s) 656, 739
NmuCI GTSAC 4 cut(s) 244, 459, 1262, 1625
NspV TTCGAA 1 cut(s) 1379
PagI TCATGA 1 cut(s) 1783
PceI AGGCCT 3 cut(s) 953, 1458, 1680
PfeI GAWTC 2 cut(s) 302, 1268
PflMI CCANNNNNTGG 1 cut(s) 1401
PinAI ACCGGT 1 cut(s) 1259
PleI GAGTC 2 cut(s) 698, 1299
PpsI GAGTC 2 cut(s) 698, 1299
Ppu21I YACGTR 1 cut(s) 199
PshBI ATTAAT 1 cut(s) 1286
PsiI TTATAA 1 cut(s) 1809
Psp124BI GAGCTC 1 cut(s) 1556
Psp1406I AACGTT 1 cut(s) 417
PspFI CCCAGC 2 cut(s) 1621, 1770
PspN4I GGNNCC 2 cut(s) 656, 739
PspPI GGNCC 4 cut(s) 324, 655, 1114, 1654
PstI CTGCAG 1 cut(s) 175
PvuII CAGCTG 1 cut(s) 1774
RsaI GTAC 1 cut(s) 1727
RsaNI GTAC 1 cut(s) 1726
RseI CAYNNNNRTG 3 cut(s) 409, 710, 1782
SacI GAGCTC 1 cut(s) 1556
SaqAI TTAA 4 cut(s) 420, 960, 1286, 1508
Sau3AI GATC 6 cut(s) 720, 970, 1329, 1404, 1422, 1581
Sau96I GGNCC 4 cut(s) 324, 655, 1114, 1654
SchI GAGTC 2 cut(s) 699, 1299
SduI GDGCHC 3 cut(s) 1010, 1556, 1765
SfaNI GCATC 4 cut(s) 201, 840, 1354, 1485
SfcI CTRYAG 1 cut(s) 171
SfuI TTCGAA 1 cut(s) 1379
SinI GGWCC 4 cut(s) 324, 655, 1114, 1654
SmiMI CAYNNNNRTG 3 cut(s) 409, 710, 1782
SmlI CTYRAG 3 cut(s) 765, 792, 1017
SmoI CTYRAG 3 cut(s) 765, 792, 1017
Sse9I AATT 9 cut(s) 165, 229, 963, 1056, 1074, 1086, 1253, 1389, 1415
SseBI AGGCCT 3 cut(s) 953, 1458, 1680
SsiI CCGC 4 cut(s) 56, 392, 702, 1334
SstI GAGCTC 1 cut(s) 1556
StuI AGGCCT 3 cut(s) 953, 1458, 1680
StyI CCWWGG 2 cut(s) 618, 705
TaaI ACNGT 3 cut(s) 70, 265, 1012
TaiI ACGT 5 cut(s) 201, 243, 297, 420, 1322
TaqI TCGA 3 cut(s) 1249, 1325, 1379
TaqII GACCGA 1 cut(s) 1102
TasI AATT 9 cut(s) 165, 229, 963, 1056, 1074, 1086, 1253, 1389, 1415
TauI GCSGC 2 cut(s) 704, 1337
TfiI GAWTC 2 cut(s) 302, 1268
Tru1I TTAA 4 cut(s) 420, 960, 1286, 1508
Tru9I TTAA 4 cut(s) 420, 960, 1286, 1508
TscAI CASTG 4 cut(s) 931, 1453, 1727, 1795
TseFI GTSAC 4 cut(s) 244, 459, 1262, 1625
Tsp45I GTSAC 4 cut(s) 244, 459, 1262, 1625
TspDTI ATGAA 5 cut(s) 352, 845, 1148, 1524, 1737
TspGWI ACGGA 3 cut(s) 441, 984, 1814
TspRI CASTG 4 cut(s) 931, 1453, 1727, 1795
Van91I CCANNNNNTGG 1 cut(s) 1401
VneI GTGCAC 2 cut(s) 1006, 1761
VpaK11BI GGWCC 4 cut(s) 324, 655, 1114, 1654
VspI ATTAAT 1 cut(s) 1286
XapI RAATTY 3 cut(s) 229, 963, 1253
XcmI CCANNNNNNNNNTGG 1 cut(s) 665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.