FvH4_5g27820

Protein NRT1 PTR FAMILY 4.3-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
19026433 .. 19030704
4272 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g27820.t1

Sequence Viewer

Length: 1920 bp
ATGGCAGAAGATAGGAGACTGCAGCAGGGTAATAATCTCATAATGAGTAAGGTTGGGAGCCTGGAGAGCAGCATGAACGATCATCATCGTCATCATCATCATGAGTTAATGGGTGGTGAAGAGGTAGTCGTCACTGTGGATTGGAGAGGCAGACCTTCTAATGCCGCCAAGCATGGTGGAATGAAAGCTGCTTCATTTCTTCTTGGGCTTCAATCATTTGAGATAATGGCAATAGCGGCCGTTGGGAACAACCTGATAACATATGTGATAAATGAGATGCATTTCTCATTATCCAAGTCTGCAAACATAGTGACAAACTTCATTGGTACCGTCTTCCTCTTGGCCCTTGTTGGTGGCTACCTCTCTGATTCTTATCTTGGCAGCTTCTGGACCATGCTTATCTTTGGCTTTGTTGAACTTTCGGGTTTCATATTATTGTCAGTCCAAGCTCATCTTCCGCAGCTAAAGCCACCACCTTGCAACAACAGCACAGCTGTTGGAGAAGACTACTGTGAAGAAGCAAAAGGGTTCAAAGCATTGATCTTCTTCGCGGCTCTCTACTTGGTAGCATTAGGGAGTGGGTGTGTTAAACCAAACATGATTGCTCATGGAGCAGACCAGTTCAACCCTGCAGATAACCCTAAACAATCCAAGAAACTCTCCACCTACTTCAATGCTGCTTATTTCGCCTTCTCCGTCGGAGAACTCATCGCCCTCACGCTTCTCGTTTGGGTCCAAACTCACTCCGGAATGGATGTTGGCTTCGGTGTCTCTGCGGCTGTCATGGCTATGGGACTCATCTGCTTGGTCTCCGGTACCCTCTATTACAGAAACAAGCCACCTCAACGAAGCATTTTCACCCCTATTGCTCAAGTTTTTGTGGCTGCAATACTAAAGAGAAAGCAAGTTTGTCCATCCAATCCTCACTTGCTTCACGGAAGCCAGAACAATGACAATGCTTTCTCTTCTGATATTGACCCCTTTAATCACTCTCAAAAATTCAGGTTCTTGGACAAGGCGTGCATTAAGATTGAAGATGGCAGTAACACAAAGGAGAGTCCATGGAGATTGTGCACAGTTACACAAGTGAACCAAGTGAAAGTACTTCTCTCCGTGATTCCAATCTTTGCTTCCACAATAGTTTTCAACACCATTTTGGCTCAGCTACAAACATTCTCAGTCCAACAAGGAAGTGCCATGGACACCCAACTCACCAAATCTTTCCATATCCCTCCAGCCTCACTCCAGTCCATTCCTTACATCATCCTCATCTTCCTTGTCCCTCTCTACGACGCTTTCTTTGTCCCTTTCACAAGAAAGCTTACCGGAAACGAATCAGGAATCTCCCCATTACAAAGAATAGGGGCCGGCCTCTTCTTTGCCACGTTTTCCATGATCTCAGCTGCTGTAATGGAGCAGAAGCGAAGGGAAGCTGCCGTCACGTCCAACAAGACATTGTCGATTTTCTGGATCACACCGCAGTTCTTGATCTTCGGGTTATCGGAGATGTTGACGGCAGTCGGCCTGATTGAGTTCTTCTACAAGCAATCCTTGAAAGGCCGGATGCAAGCATTTTTGACTGCAGTGACATACTGCTCGTATTCATTCGGGTTTTATCTAAGCTCACTGTTGGTCTCTCTGGTGAACAAGATCACTAGCTCTTCATCTTCATCAACTGGTAGTCATGGTGGTTGGCTTAGTGACAATGATCTCAACAAGGACAGGTTGGACCTTTTCTATTGGTTGTTGGCAGGGCTTAGCTTCCTCAACTTCCTCAACTATCTGTTCTGGTCTAAGTGGTACTCTCACAGTCCATCTTCATCATCATCATCATCATCATCAAGGGCACAACAACAAGACCATTATAGATATAGCACTGCTGCCGCTGCTGCTACTTCTGCGGATCATAATCTACCATAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

640

Amino Acids

70.38

Weight (kDa)

8.71

Isoelectric Point (pI)

41.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 129 - 554 6.2e-87 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0009913)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 326, 815
AccB1I GGYRCC 2 cut(s) 326, 815
AccII CGCG 1 cut(s) 551
AccIII TCCGGA 1 cut(s) 746
AciI CCGC 8 cut(s) 165, 236, 458, 551, 776, 1478, 1884, 1901
AclWI GGATC 2 cut(s) 1478, 1911
AcoI YGGCCR 1 cut(s) 237
AcsI RAATTY 1 cut(s) 998
AfaI GTAC 4 cut(s) 328, 817, 1104, 1802
AgsI TTSAA 8 cut(s) 212, 416, 532, 625, 673, 1034, 1147, 1555
AjiI CACGTC 1 cut(s) 1443
AjnI CCWGG 1 cut(s) 60
AjuI GAANNNNNNNTTGG 4 cut(s) 438, 470, 1114, 1146
Alw21I GWGCWC 1 cut(s) 1076
Alw26I GTCTC 4 cut(s) 10, 775, 814, 1639
Alw44I GTGCAC 1 cut(s) 1072
AlwI GGATC 2 cut(s) 1478, 1911
AlwNI CAGNNNCTG 2 cut(s) 387, 1406
Aor13HI TCCGGA 1 cut(s) 746
AoxI GGCC 6 cut(s) 237, 342, 1365, 1369, 1522, 1558
ApaLI GTGCAC 1 cut(s) 1072
ApoI RAATTY 1 cut(s) 998
ArsI GACNNNNNNTTYG 2 cut(s) 1283, 1315
Asp718I GGTACC 2 cut(s) 326, 815
AspS9I GGNCC 5 cut(s) 343, 390, 733, 1365, 1729
AsuHPI GGTGA 4 cut(s) 128, 850, 1204, 1654
AvaII GGWCC 3 cut(s) 390, 733, 1729
BaeGI GKGCMC 2 cut(s) 1076, 1849
BanI GGYRCC 2 cut(s) 326, 815
BbsI GAAGAC 2 cut(s) 325, 510
Bbv12I GWGCWC 1 cut(s) 1076
BccI CCATC 3 cut(s) 922, 1031, 1822
BceAI ACGGC 3 cut(s) 224, 1421, 1530
BciT130I CCWGG 1 cut(s) 62
BcoDI GTCTC 4 cut(s) 10, 775, 814, 1639
BfaI CTAG 1 cut(s) 1656
BfmI CTRYAG 3 cut(s) 20, 630, 1581
BlpI GCTNAGC 2 cut(s) 1161, 1757
BmcAI AGTACT 1 cut(s) 1104
Bme1390I CCNGG 1 cut(s) 62
Bme18I GGWCC 3 cut(s) 390, 733, 1729
BmgBI CACGTC 1 cut(s) 1443
BmgT120I GGNCC 5 cut(s) 343, 390, 733, 1365, 1729
BmiI GGNNCC 5 cut(s) 59, 328, 734, 817, 1366
BmrFI CCNGG 1 cut(s) 62
BmsI GCATC 2 cut(s) 267, 1554
BoxI GACNNNNGTC 1 cut(s) 1517
BpiI GAAGAC 2 cut(s) 325, 510
BpmI CTGGAG 3 cut(s) 83, 1218, 1229
Bpu1102I GCTNAGC 2 cut(s) 1161, 1757
BpuEI CTTGAG 1 cut(s) 855
BsaBI GATNNNNATC 4 cut(s) 84, 372, 1121, 1908
BsaI GGTCTC 2 cut(s) 814, 1639
BsaJI CCNNGG 2 cut(s) 1061, 1197
BsaWI WCCGGW 3 cut(s) 746, 812, 1325
BsaXI ACNNNNNCTCC 2 cut(s) 568, 598
Bse118I RCCGGY 1 cut(s) 1367
Bse1I ACTGG 3 cut(s) 619, 1246, 1681
Bse8I GATNNNNATC 4 cut(s) 84, 372, 1121, 1908
BseAI TCCGGA 1 cut(s) 746
BseBI CCWGG 1 cut(s) 62
BseDI CCNNGG 2 cut(s) 1061, 1197
BseGI GGATG 4 cut(s) 760, 914, 1263, 1569
BseJI GATNNNNATC 4 cut(s) 84, 372, 1121, 1908
BseMII CTCAG 3 cut(s) 1175, 1191, 1413
BseNI ACTGG 3 cut(s) 619, 1246, 1681
BseSI GKGCMC 2 cut(s) 1076, 1849
BseX3I CGGCCG 1 cut(s) 237
Bsh1236I CGCG 1 cut(s) 551
Bsh1285I CGRYCG 1 cut(s) 240
BshFI GGCC 6 cut(s) 239, 344, 1367, 1371, 1524, 1560
BshNI GGYRCC 2 cut(s) 326, 815
BsiEI CGRYCG 1 cut(s) 240
BsiHKAI GWGCWC 1 cut(s) 1076
BsiSI CCGG 5 cut(s) 747, 813, 1326, 1368, 1561
BslFI GGGAC 3 cut(s) 807, 1265, 1289
BsmAI GTCTC 4 cut(s) 10, 775, 814, 1639
BsmFI GGGAC 3 cut(s) 807, 1265, 1289
BsnI GGCC 6 cut(s) 239, 344, 1367, 1371, 1524, 1560
Bso31I GGTCTC 2 cut(s) 814, 1639
Bsp1286I GDGCHC 2 cut(s) 1076, 1849
Bsp13I TCCGGA 1 cut(s) 746
Bsp143I GATC 8 cut(s) 79, 540, 1395, 1470, 1488, 1650, 1708, 1903
Bsp1720I GCTNAGC 2 cut(s) 1161, 1757
Bsp19I CCATGG 2 cut(s) 1061, 1197
BspACI CCGC 8 cut(s) 165, 236, 458, 551, 776, 1478, 1884, 1901
BspANI GGCC 6 cut(s) 239, 344, 1367, 1371, 1524, 1560
BspCNI CTCAG 3 cut(s) 1174, 1190, 1412
BspEI TCCGGA 1 cut(s) 746
BspFNI CGCG 1 cut(s) 551
BspHI TCATGA 1 cut(s) 100
BspLI GGNNCC 5 cut(s) 59, 328, 734, 817, 1366
BspMAI CTGCAG 3 cut(s) 24, 634, 1585
BspPI GGATC 2 cut(s) 1478, 1911
BspQI GCTCTTC 1 cut(s) 1666
BspT107I GGYRCC 2 cut(s) 326, 815
BspTNI GGTCTC 2 cut(s) 814, 1639
BsrFI RCCGGY 1 cut(s) 1367
BsrI ACTGG 3 cut(s) 619, 1246, 1681
BssAI RCCGGY 1 cut(s) 1367
BssECI CCNNGG 2 cut(s) 1061, 1197
BssMI GATC 8 cut(s) 79, 540, 1395, 1470, 1488, 1650, 1708, 1903
BssT1I CCWWGG 2 cut(s) 1061, 1197
Bst2UI CCWGG 1 cut(s) 62
Bst4CI ACNGT 6 cut(s) 136, 331, 512, 1078, 1629, 1811
Bst6I CTCTTC 4 cut(s) 114, 970, 1379, 1666
BstC8I GCNNGC 3 cut(s) 1021, 1369, 1569
BstDEI CTNAG 7 cut(s) 1161, 1177, 1399, 1619, 1697, 1757, 1794
BstDSI CCRYGG 2 cut(s) 1061, 1197
BstF5I GGATG 4 cut(s) 760, 914, 1263, 1569
BstFNI CGCG 1 cut(s) 551
BstKTI GATC 8 cut(s) 82, 543, 1398, 1473, 1491, 1653, 1711, 1906
BstMAI GTCTC 4 cut(s) 10, 775, 814, 1639
BstMBI GATC 8 cut(s) 79, 540, 1395, 1470, 1488, 1650, 1708, 1903
BstMCI CGRYCG 1 cut(s) 240
BstNI CCWGG 1 cut(s) 62
BstPAI GACNNNNGTC 1 cut(s) 1517
BstSCI CCNGG 1 cut(s) 60
BstSFI CTRYAG 3 cut(s) 20, 630, 1581
BstSLI GKGCMC 2 cut(s) 1076, 1849
BstUI CGCG 1 cut(s) 551
BstV2I GAAGAC 2 cut(s) 325, 510
BstZI CGGCCG 1 cut(s) 237
BsuRI GGCC 6 cut(s) 239, 344, 1367, 1371, 1524, 1560
BtgI CCRYGG 2 cut(s) 1061, 1197
BtgZI GCGATG 1 cut(s) 694
BtrI CACGTC 1 cut(s) 1443
BtsCI GGATG 4 cut(s) 760, 914, 1263, 1569
BtsI GCAGTG 2 cut(s) 1590, 1875
BtsIMutI CAGTG 4 cut(s) 132, 1590, 1625, 1875
Cac8I GCNNGC 3 cut(s) 1021, 1369, 1569
CaiI CAGNNNCTG 2 cut(s) 387, 1406
CciI TCATGA 1 cut(s) 100
Cfr10I RCCGGY 1 cut(s) 1367
Cfr13I GGNCC 5 cut(s) 343, 390, 733, 1365, 1729
CseI GACGC 1 cut(s) 1301
Csp6I GTAC 4 cut(s) 327, 816, 1103, 1801
CspCI CAANNNNNGTGG 2 cut(s) 157, 192
CviQI GTAC 4 cut(s) 327, 816, 1103, 1801
DdeI CTNAG 7 cut(s) 1161, 1177, 1399, 1619, 1697, 1757, 1794
DpnI GATC 8 cut(s) 81, 542, 1397, 1472, 1490, 1652, 1710, 1905
DpnII GATC 8 cut(s) 79, 540, 1395, 1470, 1488, 1650, 1708, 1903
EaeI YGGCCR 1 cut(s) 237
EagI CGGCCG 1 cut(s) 237
Eam1104I CTCTTC 4 cut(s) 114, 970, 1379, 1666
EarI CTCTTC 4 cut(s) 114, 970, 1379, 1666
EclXI CGGCCG 1 cut(s) 237
Eco130I CCWWGG 2 cut(s) 1061, 1197
Eco31I GGTCTC 2 cut(s) 814, 1639
Eco47I GGWCC 3 cut(s) 390, 733, 1729
Eco52I CGGCCG 1 cut(s) 237
EcoRII CCWGG 1 cut(s) 60
EcoT14I CCWWGG 2 cut(s) 1061, 1197
EcoT22I ATGCAT 1 cut(s) 282
ErhI CCWWGG 2 cut(s) 1061, 1197
FalI AAGNNNNNCTT 4 cut(s) 438, 470, 1535, 1567
FaqI GGGAC 3 cut(s) 807, 1265, 1289
FauNDI CATATG 1 cut(s) 262
FokI GGATG 4 cut(s) 767, 901, 1250, 1576
FseI GGCCGGCC 1 cut(s) 1371
FspBI CTAG 1 cut(s) 1656
GsuI CTGGAG 3 cut(s) 83, 1218, 1229
HaeIII GGCC 6 cut(s) 239, 344, 1367, 1371, 1524, 1560
HapII CCGG 5 cut(s) 747, 813, 1326, 1368, 1561
HgaI GACGC 1 cut(s) 1301
HincII GTYRAC 1 cut(s) 1512
HindII GTYRAC 1 cut(s) 1512
HindIII AAGCTT 1 cut(s) 1319
HinfI GANTC 6 cut(s) 368, 795, 1057, 1117, 1334, 1341
HpaII CCGG 5 cut(s) 747, 813, 1326, 1368, 1561
HphI GGTGA 4 cut(s) 128, 850, 1204, 1654
Hpy166II GTNNAC 4 cut(s) 1074, 1090, 1512, 1645
Hpy188I TCNGA 4 cut(s) 367, 701, 970, 1504
Hpy188III TCNNGA 6 cut(s) 101, 388, 747, 1338, 1468, 1486
Hpy8I GTNNAC 4 cut(s) 1074, 1090, 1512, 1645
Hpy99I CGWCG 2 cut(s) 701, 1295
HpyAV CCTTC 3 cut(s) 165, 700, 1419
HpyCH4III ACNGT 6 cut(s) 136, 331, 512, 1078, 1629, 1811
HpyCH4IV ACGT 2 cut(s) 1385, 1442
HpyF3I CTNAG 7 cut(s) 1161, 1177, 1399, 1619, 1697, 1757, 1794
HpySE526I ACGT 2 cut(s) 1385, 1442
Kpn2I TCCGGA 1 cut(s) 746
KpnI GGTACC 2 cut(s) 330, 819
KroI GCCGGC 1 cut(s) 1367
KroNI GCCGGC 1 cut(s) 1369
Kzo9I GATC 8 cut(s) 79, 540, 1395, 1470, 1488, 1650, 1708, 1903
LguI GCTCTTC 1 cut(s) 1666
LmnI GCTCC 3 cut(s) 57, 611, 1414
LweI GCATC 2 cut(s) 267, 1554
MaeI CTAG 1 cut(s) 1656
MaeII ACGT 2 cut(s) 1385, 1442
MaeIII GTNAC 7 cut(s) 130, 310, 1043, 1078, 1438, 1585, 1700
MalI GATC 8 cut(s) 81, 542, 1397, 1472, 1490, 1652, 1710, 1905
MboI GATC 8 cut(s) 79, 540, 1395, 1470, 1488, 1650, 1708, 1903
MhlI GDGCHC 2 cut(s) 1076, 1849
MluCI AATT 1 cut(s) 998
MlyI GAGTC 2 cut(s) 789, 1066
MmeI TCCRAC 5 cut(s) 478, 679, 1207, 1470, 1707
Mph1103I ATGCAT 1 cut(s) 282
MroI TCCGGA 1 cut(s) 746
MroNI GCCGGC 1 cut(s) 1367
MseI TTAA 4 cut(s) 107, 588, 984, 1026
MslI CAYNNNNRTG 2 cut(s) 99, 788
MspA1I CMGCKG 3 cut(s) 494, 1403, 1886
MspI CCGG 5 cut(s) 747, 813, 1326, 1368, 1561
MspR9I CCNGG 1 cut(s) 62
MvaI CCWGG 1 cut(s) 62
MvnI CGCG 1 cut(s) 551
NaeI GCCGGC 1 cut(s) 1369
NcoI CCATGG 2 cut(s) 1061, 1197
NdeI CATATG 1 cut(s) 262
NdeII GATC 8 cut(s) 79, 540, 1395, 1470, 1488, 1650, 1708, 1903
NgoMIV GCCGGC 1 cut(s) 1367
NlaIV GGNNCC 5 cut(s) 59, 328, 734, 817, 1366
NmuCI GTSAC 5 cut(s) 130, 310, 1438, 1585, 1700
NsiI ATGCAT 1 cut(s) 282
PagI TCATGA 1 cut(s) 100
PciSI GCTCTTC 1 cut(s) 1666
PcsI WCGNNNNNNNCGW 1 cut(s) 693
PdiI GCCGGC 1 cut(s) 1369
PfeI GAWTC 4 cut(s) 368, 1117, 1334, 1341
PflFI GACNNNGTC 1 cut(s) 1456
PleI GAGTC 2 cut(s) 789, 1065
PpsI GAGTC 2 cut(s) 789, 1065
PshAI GACNNNNGTC 1 cut(s) 1517
Psp6I CCWGG 1 cut(s) 60
PspGI CCWGG 1 cut(s) 60
PspN4I GGNNCC 5 cut(s) 59, 328, 734, 817, 1366
PspPI GGNCC 5 cut(s) 343, 390, 733, 1365, 1729
PstI CTGCAG 3 cut(s) 24, 634, 1585
PstNI CAGNNNCTG 2 cut(s) 387, 1406
PsyI GACNNNGTC 1 cut(s) 1456
PvuII CAGCTG 2 cut(s) 494, 1403
RigI GGCCGGCC 1 cut(s) 1371
RsaI GTAC 4 cut(s) 328, 817, 1104, 1802
RsaNI GTAC 4 cut(s) 327, 816, 1103, 1801
RseI CAYNNNNRTG 2 cut(s) 99, 788
SapI GCTCTTC 1 cut(s) 1666
SaqAI TTAA 4 cut(s) 107, 588, 984, 1026
Sau3AI GATC 8 cut(s) 79, 540, 1395, 1470, 1488, 1650, 1708, 1903
Sau96I GGNCC 5 cut(s) 343, 390, 733, 1365, 1729
ScaI AGTACT 1 cut(s) 1104
SchI GAGTC 2 cut(s) 789, 1066
ScrFI CCNGG 1 cut(s) 62
SduI GDGCHC 2 cut(s) 1076, 1849
SfaNI GCATC 2 cut(s) 267, 1554
SfcI CTRYAG 3 cut(s) 20, 630, 1581
SinI GGWCC 3 cut(s) 390, 733, 1729
SmiMI CAYNNNNRTG 2 cut(s) 99, 788
SmlI CTYRAG 1 cut(s) 870
SmoI CTYRAG 1 cut(s) 870
Sse9I AATT 1 cut(s) 998
SsiI CCGC 8 cut(s) 165, 236, 458, 551, 776, 1478, 1884, 1901
SspMI CTAG 1 cut(s) 1656
StyD4I CCNGG 1 cut(s) 60
StyI CCWWGG 2 cut(s) 1061, 1197
TaaI ACNGT 6 cut(s) 136, 331, 512, 1078, 1629, 1811
TaiI ACGT 2 cut(s) 1388, 1445
TaqI TCGA 1 cut(s) 1460
TasI AATT 1 cut(s) 998
TatI WGTACW 1 cut(s) 1102
TauI GCSGC 5 cut(s) 167, 239, 554, 779, 1886
TfiI GAWTC 4 cut(s) 368, 1117, 1334, 1341
Tru1I TTAA 4 cut(s) 107, 588, 984, 1026
Tru9I TTAA 4 cut(s) 107, 588, 984, 1026
TscAI CASTG 4 cut(s) 139, 1590, 1632, 1882
TseFI GTSAC 5 cut(s) 130, 310, 1438, 1585, 1700
Tsp45I GTSAC 5 cut(s) 130, 310, 1438, 1585, 1700
TspDTI ATGAA 9 cut(s) 89, 183, 197, 310, 418, 1593, 1653, 1659, 1809
TspGWI ACGGA 3 cut(s) 685, 951, 1102
TspRI CASTG 4 cut(s) 139, 1590, 1632, 1882
Tth111I GACNNNGTC 1 cut(s) 1456
VneI GTGCAC 1 cut(s) 1072
VpaK11BI GGWCC 3 cut(s) 390, 733, 1729
XapI RAATTY 1 cut(s) 998
XspI CTAG 1 cut(s) 1656
ZrmI AGTACT 1 cut(s) 1104
Zsp2I ATGCAT 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.