Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0020216

Physical Location & Seq

Genomic Coordinates Reverse (-)

22215168 .. 22216329

Gene Structure 1162 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G60240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGATGAAGTCAAGACGTGAACAATCAATCGAAGAAGCAATCGTCGCAAATTATTTGAAGATGATGATCGATAACGTAAACGTTTGGCCTCGCCACTTCCTCCGAAGCGAAGACGTGTACTGCAAGAATCCGTGGACGCTTTTCGTTACTAGAGATCCTATAATCCTACACTTCGGACGATACTTCTTCGTTAATCGGAGTGTGAATTCAGGTTTAACCGATGGATGTGAATACGGTTGTTGGAGAATCATCGGTCGTGATAGAGTGATCAAGTCGGTGACGACCGGGAAGATTCTAGGGTTAAAGAAGGTTTATAAGTTCTGTGAAACTGATCGGAAACCGAAATCGGTTTTTAAGTTCTTGGAAAAGGAGAAGAGAAGAGTAAGAGATAGACGAATCTGGGCGATGGAAGAGTATAGGTTTGCAAGTACGTGGAAACAAGATTACGTGATCTGCAAGATTCGACGTCTGTATCCACAACCATTTGACTACATGTTGGCCCAGCACATTCGAGGTTACTATAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009653 GO:0009888 GO:0009889 GO:0009933 GO:0010014 GO:0010199 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0048507 GO:0048532 GO:0048646 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090691 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

175

Amino Acids

21.32

Weight (kDa)

9.87

Isoelectric Point (pI)

47.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	11 - 140	2.3e-11	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0020216)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60240 AT1G60280 AT1G60300 AT1G60340 AT1G60350 AT1G60380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	315
AatII	GACGTC	1 cut(s)	469
AclI	AACGTT	1 cut(s)	81
AclWI	GGATC	1 cut(s)	149
AcsI	RAATTY	1 cut(s)	205
AcyI	GRCGYC	1 cut(s)	466
AfaI	GTAC	2 cut(s)	119, 430
AflIII	ACRYGT	2 cut(s)	114, 492
AgsI	TTSAA	1 cut(s)	58
AjiI	CACGTC	2 cut(s)	17, 115
AlwI	GGATC	1 cut(s)	149
AoxI	GGCC	2 cut(s)	86, 498
ApoI	RAATTY	1 cut(s)	205
AspS9I	GGNCC	1 cut(s)	499
AsuC2I	CCSGG	1 cut(s)	286
AsuHPI	GGTGA	1 cut(s)	289
BaeI	ACNNNNGTAYC	2 cut(s)	455, 488
BbsI	GAAGAC	1 cut(s)	117
BccI	CCATC	2 cut(s)	215, 400
BciVI	GTATCC	1 cut(s)	483
BclI	TGATCA	1 cut(s)	267
BcnI	CCSGG	1 cut(s)	286
BfaI	CTAG	2 cut(s)	150, 296
BfuI	GTATCC	1 cut(s)	483
Bme1390I	CCNGG	1 cut(s)	286
BmgBI	CACGTC	2 cut(s)	17, 115
BmgT120I	GGNCC	1 cut(s)	499
BmrFI	CCNGG	1 cut(s)	286
BpiI	GAAGAC	1 cut(s)	117
BpuMI	CCSGG	1 cut(s)	286
Bsa29I	ATCGAT	1 cut(s)	69
BsaAI	YACGTR	2 cut(s)	432, 448
BsaBI	GATNNNNATC	1 cut(s)	65
BsaHI	GRCGYC	1 cut(s)	466
BsaJI	CCNNGG	1 cut(s)	131
Bse8I	GATNNNNATC	1 cut(s)	65
BseCI	ATCGAT	1 cut(s)	69
BseDI	CCNNGG	1 cut(s)	131
BseGI	GGATG	1 cut(s)	230
BseJI	GATNNNNATC	1 cut(s)	65
BseYI	CCCAGC	1 cut(s)	501
Bsh1285I	CGRYCG	2 cut(s)	256, 285
BshFI	GGCC	2 cut(s)	88, 500
BshVI	ATCGAT	1 cut(s)	69
BsiEI	CGRYCG	2 cut(s)	256, 285
BsiSI	CCGG	1 cut(s)	285
BsnI	GGCC	2 cut(s)	88, 500
Bsp143I	GATC	5 cut(s)	66, 154, 267, 331, 450
BspANI	GGCC	2 cut(s)	88, 500
BspDI	ATCGAT	1 cut(s)	69
BspPI	GGATC	1 cut(s)	149
BssECI	CCNNGG	1 cut(s)	131
BssMI	GATC	5 cut(s)	66, 154, 267, 331, 450
BssNI	GRCGYC	1 cut(s)	466
Bst4CI	ACNGT	1 cut(s)	236
Bst6I	CTCTTC	3 cut(s)	368, 373, 405
BstACI	GRCGYC	1 cut(s)	466
BstBAI	YACGTR	2 cut(s)	432, 448
BstDSI	CCRYGG	1 cut(s)	131
BstF5I	GGATG	1 cut(s)	230
BstKTI	GATC	5 cut(s)	69, 157, 270, 334, 453
BstMBI	GATC	5 cut(s)	66, 154, 267, 331, 450
BstMCI	CGRYCG	2 cut(s)	256, 285
BstMWI	GCNNNNNNNGC	1 cut(s)	44
BstNSI	RCATGY	1 cut(s)	496
BstSCI	CCNGG	1 cut(s)	284
BstV2I	GAAGAC	1 cut(s)	117
BstX2I	RGATCY	1 cut(s)	154
BstYI	RGATCY	1 cut(s)	154
Bsu15I	ATCGAT	1 cut(s)	69
BsuI	GTATCC	1 cut(s)	483
BsuRI	GGCC	2 cut(s)	88, 500
BsuTUI	ATCGAT	1 cut(s)	69
BtgI	CCRYGG	1 cut(s)	131
BtgZI	GCGATG	1 cut(s)	419
BtrI	CACGTC	2 cut(s)	17, 115
BtsCI	GGATG	1 cut(s)	230
Cfr13I	GGNCC	1 cut(s)	499
ClaI	ATCGAT	1 cut(s)	69
CseI	GACGC	1 cut(s)	145
Csp6I	GTAC	2 cut(s)	118, 429
CviAII	CATG	1 cut(s)	493
CviJI	RGCY	2 cut(s)	88, 500
CviKI_1	RGCY	2 cut(s)	88, 500
CviQI	GTAC	2 cut(s)	118, 429
DpnI	GATC	5 cut(s)	68, 156, 269, 333, 452
DpnII	GATC	5 cut(s)	66, 154, 267, 331, 450
Eam1104I	CTCTTC	3 cut(s)	368, 373, 405
EarI	CTCTTC	3 cut(s)	368, 373, 405
EcoRI	GAATTC	1 cut(s)	205
FaeI	CATG	1 cut(s)	496
FaiI	YATR	5 cut(s)	161, 315, 417, 494, 522
FatI	CATG	1 cut(s)	492
FbaI	TGATCA	1 cut(s)	267
FokI	GGATG	1 cut(s)	237
FspBI	CTAG	2 cut(s)	150, 296
GsaI	CCCAGC	1 cut(s)	505
HaeIII	GGCC	2 cut(s)	88, 500
HapII	CCGG	1 cut(s)	285
HgaI	GACGC	1 cut(s)	145
Hin1I	GRCGYC	1 cut(s)	466
Hin1II	CATG	1 cut(s)	496
HinfI	GANTC	5 cut(s)	127, 246, 292, 396, 460
HpaII	CCGG	1 cut(s)	285
HphI	GGTGA	1 cut(s)	289
Hpy166II	GTNNAC	4 cut(s)	20, 79, 118, 135
Hpy188I	TCNGA	4 cut(s)	104, 176, 198, 336
Hpy188III	TCNNGA	2 cut(s)	12, 257
Hpy8I	GTNNAC	4 cut(s)	20, 79, 118, 135
Hpy99I	CGWCG	2 cut(s)	47, 468
HpyAV	CCTTC	1 cut(s)	301
HpyCH4III	ACNGT	1 cut(s)	236
HpyCH4IV	ACGT	7 cut(s)	16, 75, 81, 114, 431, 447, 466
HpyCH4V	TGCA	3 cut(s)	123, 425, 456
HpyF10VI	GCNNNNNNNGC	1 cut(s)	44
HpySE526I	ACGT	7 cut(s)	16, 75, 81, 114, 431, 447, 466
Hsp92I	GRCGYC	1 cut(s)	466
Hsp92II	CATG	1 cut(s)	496
Ksp22I	TGATCA	1 cut(s)	267
Kzo9I	GATC	5 cut(s)	66, 154, 267, 331, 450
LpnPI	CCDG	4 cut(s)	195, 298, 385, 515
MaeI	CTAG	2 cut(s)	150, 296
MaeII	ACGT	7 cut(s)	16, 75, 81, 114, 431, 447, 466
MaeIII	GTNAC	3 cut(s)	145, 277, 515
MalI	GATC	5 cut(s)	68, 156, 269, 333, 452
MboI	GATC	5 cut(s)	66, 154, 267, 331, 450
MboII	GAAGA	8 cut(s)	44, 70, 122, 178, 301, 385, 390, 422
MflI	RGATCY	1 cut(s)	154
MluCI	AATT	2 cut(s)	49, 205
MmeI	TCCRAC	1 cut(s)	221
MnlI	CCTC	3 cut(s)	99, 110, 506
MseI	TTAA	4 cut(s)	192, 215, 302, 354
MspI	CCGG	1 cut(s)	285
MspR9I	CCNGG	1 cut(s)	286
MwoI	GCNNNNNNNGC	1 cut(s)	44
NciI	CCSGG	1 cut(s)	286
NdeII	GATC	5 cut(s)	66, 154, 267, 331, 450
NlaIII	CATG	1 cut(s)	496
NmuCI	GTSAC	1 cut(s)	277
NspI	RCATGY	1 cut(s)	496
PciI	ACATGT	1 cut(s)	492
PfeI	GAWTC	5 cut(s)	127, 246, 292, 396, 460
Ppu21I	YACGTR	2 cut(s)	432, 448
PscI	ACATGT	1 cut(s)	492
PsiI	TTATAA	1 cut(s)	315
Psp1406I	AACGTT	1 cut(s)	81
PspFI	CCCAGC	1 cut(s)	501
PspPI	GGNCC	1 cut(s)	499
PsuI	RGATCY	1 cut(s)	154
RsaI	GTAC	2 cut(s)	119, 430
RsaNI	GTAC	2 cut(s)	118, 429
SaqAI	TTAA	4 cut(s)	192, 215, 302, 354
Sau3AI	GATC	5 cut(s)	66, 154, 267, 331, 450
Sau96I	GGNCC	1 cut(s)	499
ScrFI	CCNGG	1 cut(s)	286
Sse9I	AATT	2 cut(s)	49, 205
SspMI	CTAG	2 cut(s)	150, 296
StyD4I	CCNGG	1 cut(s)	284
TaaI	ACNGT	1 cut(s)	236
TaiI	ACGT	7 cut(s)	19, 78, 84, 117, 434, 450, 469
TaqI	TCGA	4 cut(s)	30, 69, 463, 511
TaqII	GACCGA	1 cut(s)	242
TasI	AATT	2 cut(s)	49, 205
TatI	WGTACW	1 cut(s)	117
TfiI	GAWTC	5 cut(s)	127, 246, 292, 396, 460
Tru1I	TTAA	4 cut(s)	192, 215, 302, 354
Tru9I	TTAA	4 cut(s)	192, 215, 302, 354
TseFI	GTSAC	1 cut(s)	277
Tsp45I	GTSAC	1 cut(s)	277
TspDTI	ATGAA	1 cut(s)	20
TspGWI	ACGGA	1 cut(s)	120
XapI	RAATTY	1 cut(s)	205
XceI	RCATGY	1 cut(s)	496
XspI	CTAG	2 cut(s)	150, 296
ZraI	GACGTC	1 cut(s)	467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.