AT1G60350
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0020216
Physical Location & Seq
Reverse (-)
22241273 .. 22242235
963 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G60350.1

Sequence Viewer

Length: 963 bp
ATGGAGGAAGATGCAGCTTTTGATCTACTCAAAGCCGAACTCTTAAACGCAGAAGACGATGCAATAATCTCACGTTATCTGAAGCGTATGGTCGTCAACGGAGACTCATGGCCTGATCACTTCATCGAAGACGCAGACGTGTTCAACAAGAATCCAAATGTGGAGTTCGATGCTGAGAGCCCTAGCTTCGTGATAGTTAAACCTCGAACAGAGGCTTGTGGTAAAACCGATGGATGTGAAACTGGTTGCTGGAGGATCATGGGTCGTGATAAACCGATAAAATCGACGGAGACTGTGAAGATTCAAGGGTTCAAGAAGATTCTCAAGTTCTGCCTAAAGAGGAAACCTAGAGGATACAAGAGAAGTTGGGTAATGGAAGAGTATAGGCTTACCAATAACTTGAACTGGAAGCAAGATCATGTGATTTGCAAGATTCGGTTTATGTTTGAAGCTGAAATCAGTTTCTTGCTAGCCAAGCATTTCTACACTACATCAGAATCACTTCCTCGAAATGAGCTGTTGCCAGCTTACGGATTCCTTTCATCAGATAAGCAATTGGAGGATGTATCTTATCCGGTGACGATAATGACTTCTGAAGGAAACGATTGGCCTAGCTACGTTACCAACAATGTGTATTGTCTGCATCCATTGGAGCTCGTTGATCTTCAAGATCGGATGTTTAATGATTACGGAACCTGCATCTTCGCTAACAAGACTTGTGGTAAAACCGATAGATGCATTAATGGTGGTTACTGGAAAATTTTGCACCGTGATAGGCTGATCAAGTCAAAGTCCGGGATAGTTATTGGTTTCAAGAAGGTGTTTAAGTTTCATGAAACGGAGAAAGAAAGATACTTCTGTGGTGGAGAAGATGTGAAGGTAACTTGGACTCTAGAAGAGTATAGGCTTAGCGTGAAGCAGAATAAATTCTTGTGCGTTATCAAGTTTACTTATGATAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

320

Amino Acids

37.38

Weight (kDa)

7.48

Isoelectric Point (pI)

28.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 18 - 130 1.2e-14 No apical meristem (NAM) protein
NAM PF02365 203 - 303 7.8e-09 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G60240 AT1G60280 AT1G60300 AT1G60340 AT1G60350 AT1G60380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 704
AclWI GGATC 1 cut(s) 263
AcsI RAATTY 2 cut(s) 759, 926
AcuI CTGAAG 2 cut(s) 101, 615
AfiI CCNNNNNNNGG 1 cut(s) 530
AflIII ACRYGT 1 cut(s) 138
AgsI TTSAA 7 cut(s) 145, 305, 313, 403, 449, 668, 814
AjiI CACGTC 1 cut(s) 139
AluBI AGCT 7 cut(s) 17, 186, 452, 517, 527, 615, 655
AluI AGCT 7 cut(s) 17, 186, 452, 517, 527, 615, 655
Alw21I GWGCWC 1 cut(s) 657
Alw26I GTCTC 2 cut(s) 96, 284
AlwI GGATC 1 cut(s) 263
AoxI GGCC 2 cut(s) 110, 608
ApeKI GCWGC 1 cut(s) 14
ApoI RAATTY 2 cut(s) 759, 926
AseI ATTAAT 1 cut(s) 741
Asp700I GAANNNNTTC 2 cut(s) 501, 926
AsuC2I CCSGG 1 cut(s) 796
AsuHPI GGTGA 1 cut(s) 589
AsuNHI GCTAGC 1 cut(s) 469
BaeI ACNNNNGTAYC 2 cut(s) 844, 877
BanII GRGCYC 2 cut(s) 182, 657
BbsI GAAGAC 2 cut(s) 60, 135
Bbv12I GWGCWC 1 cut(s) 657
BbvI GCAGC 1 cut(s) 26
BccI CCATC 1 cut(s) 224
BciVI GTATCC 1 cut(s) 347
BclI TGATCA 2 cut(s) 115, 780
BcnI CCSGG 1 cut(s) 796
BcoDI GTCTC 2 cut(s) 96, 284
BfaI CTAG 5 cut(s) 183, 348, 470, 612, 893
BfuAI ACCTGC 1 cut(s) 704
BfuI GTATCC 1 cut(s) 347
BisI GCNGC 1 cut(s) 15
BlpI GCTNAGC 1 cut(s) 908
BlsI GCNGC 1 cut(s) 16
Bme1390I CCNGG 1 cut(s) 796
BmgBI CACGTC 1 cut(s) 139
BmiI GGNNCC 1 cut(s) 694
BmrFI CCNGG 1 cut(s) 796
BmsI GCATC 5 cut(s) 49, 160, 652, 708, 725
BmtI GCTAGC 1 cut(s) 473
BpiI GAAGAC 2 cut(s) 60, 135
BpmI CTGGAG 1 cut(s) 271
Bpu1102I GCTNAGC 1 cut(s) 908
BpuEI CTTGAG 1 cut(s) 308
BpuMI CCSGG 1 cut(s) 796
BsaWI WCCGGW 1 cut(s) 574
BsaXI ACNNNNNCTCC 2 cut(s) 858, 888
Bsc4I CCNNNNNNNGG 1 cut(s) 530
Bse1I ACTGG 3 cut(s) 247, 410, 758
BseGI GGATG 4 cut(s) 239, 568, 643, 681
BseLI CCNNNNNNNGG 1 cut(s) 530
BseMII CTCAG 1 cut(s) 165
BseNI ACTGG 3 cut(s) 247, 410, 758
BseXI GCAGC 1 cut(s) 26
BshFI GGCC 2 cut(s) 112, 610
BsiHKAI GWGCWC 1 cut(s) 657
BsiSI CCGG 2 cut(s) 575, 795
BslI CCNNNNNNNGG 1 cut(s) 530
BsmAI GTCTC 2 cut(s) 96, 284
BsnI GGCC 2 cut(s) 112, 610
Bsp1286I GDGCHC 2 cut(s) 182, 657
Bsp143I GATC 7 cut(s) 22, 115, 255, 415, 661, 670, 780
Bsp1720I GCTNAGC 1 cut(s) 908
BspANI GGCC 2 cut(s) 112, 610
BspCNI CTCAG 1 cut(s) 166
BspHI TCATGA 1 cut(s) 832
BspLI GGNNCC 1 cut(s) 694
BspMI ACCTGC 1 cut(s) 704
BspOI GCTAGC 1 cut(s) 473
BspPI GGATC 1 cut(s) 263
BsrI ACTGG 3 cut(s) 247, 410, 758
BssMI GATC 7 cut(s) 22, 115, 255, 415, 661, 670, 780
Bst4CI ACNGT 2 cut(s) 295, 770
Bst6I CTCTTC 2 cut(s) 372, 891
BstC8I GCNNGC 2 cut(s) 471, 525
BstDEI CTNAG 2 cut(s) 174, 908
BstF5I GGATG 4 cut(s) 239, 568, 643, 681
BstKTI GATC 7 cut(s) 25, 118, 258, 418, 664, 673, 783
BstMAI GTCTC 2 cut(s) 96, 284
BstMBI GATC 7 cut(s) 22, 115, 255, 415, 661, 670, 780
BstMWI GCNNNNNNNGC 1 cut(s) 475
BstSCI CCNGG 1 cut(s) 794
BstV1I GCAGC 1 cut(s) 26
BstV2I GAAGAC 2 cut(s) 60, 135
BsuI GTATCC 1 cut(s) 347
BsuRI GGCC 2 cut(s) 112, 610
BtrI CACGTC 1 cut(s) 139
BtsCI GGATG 4 cut(s) 239, 568, 643, 681
BveI ACCTGC 1 cut(s) 704
Cac8I GCNNGC 2 cut(s) 471, 525
CciI TCATGA 1 cut(s) 832
CseI GACGC 1 cut(s) 140
CspCI CAANNNNNGTGG 2 cut(s) 700, 735
CviAII CATG 4 cut(s) 108, 259, 419, 833
DdeI CTNAG 2 cut(s) 174, 908
DpnI GATC 7 cut(s) 24, 117, 257, 417, 663, 672, 782
DpnII GATC 7 cut(s) 22, 115, 255, 415, 661, 670, 780
Eam1104I CTCTTC 2 cut(s) 372, 891
EarI CTCTTC 2 cut(s) 372, 891
Ecl136II GAGCTC 1 cut(s) 655
Eco24I GRGCYC 2 cut(s) 182, 657
Eco53kI GAGCTC 1 cut(s) 655
Eco57I CTGAAG 2 cut(s) 101, 615
EcoICRI GAGCTC 1 cut(s) 655
EcoT22I ATGCAT 1 cut(s) 740
EcoT38I GRGCYC 2 cut(s) 182, 657
FaeI CATG 4 cut(s) 111, 262, 422, 836
FaiI YATR 9 cut(s) 89, 109, 260, 384, 420, 443, 834, 903, 954
FatI CATG 4 cut(s) 107, 258, 418, 832
FbaI TGATCA 2 cut(s) 115, 780
Fnu4HI GCNGC 1 cut(s) 15
FokI GGATG 4 cut(s) 246, 575, 630, 688
FriOI GRGCYC 2 cut(s) 182, 657
Fsp4HI GCNGC 1 cut(s) 15
FspBI CTAG 5 cut(s) 183, 348, 470, 612, 893
GluI GCNGC 1 cut(s) 15
GsuI CTGGAG 1 cut(s) 271
HaeIII GGCC 2 cut(s) 112, 610
HapII CCGG 2 cut(s) 575, 795
HgaI GACGC 1 cut(s) 140
Hin1II CATG 4 cut(s) 111, 262, 422, 836
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
HinfI GANTC 8 cut(s) 104, 151, 301, 319, 433, 497, 534, 889
HpaII CCGG 2 cut(s) 575, 795
HphI GGTGA 1 cut(s) 589
Hpy166II GTNNAC 2 cut(s) 97, 948
Hpy188I TCNGA 5 cut(s) 81, 496, 547, 595, 675
Hpy188III TCNNGA 7 cut(s) 190, 266, 313, 668, 814, 833, 893
Hpy8I GTNNAC 2 cut(s) 97, 948
Hpy99I CGWCG 1 cut(s) 289
HpyAV CCTTC 3 cut(s) 590, 811, 871
HpyCH4III ACNGT 2 cut(s) 295, 770
HpyCH4IV ACGT 3 cut(s) 73, 138, 618
HpyCH4V TGCA 7 cut(s) 14, 62, 429, 643, 699, 738, 766
HpyF10VI GCNNNNNNNGC 1 cut(s) 475
HpyF3I CTNAG 2 cut(s) 174, 908
HpySE526I ACGT 3 cut(s) 73, 138, 618
Hsp92II CATG 4 cut(s) 111, 262, 422, 836
Ksp22I TGATCA 2 cut(s) 115, 780
Kzo9I GATC 7 cut(s) 22, 115, 255, 415, 661, 670, 780
LmnI GCTCC 1 cut(s) 652
LpnPI CCDG 9 cut(s) 126, 228, 235, 391, 537, 588, 709, 739, 808
Lsp1109I GCAGC 1 cut(s) 26
LweI GCATC 5 cut(s) 49, 160, 652, 708, 725
MaeI CTAG 5 cut(s) 183, 348, 470, 612, 893
MaeII ACGT 3 cut(s) 73, 138, 618
MaeIII GTNAC 4 cut(s) 577, 619, 749, 880
MalI GATC 7 cut(s) 24, 117, 257, 417, 663, 672, 782
MboI GATC 7 cut(s) 22, 115, 255, 415, 661, 670, 780
MfeI CAATTG 1 cut(s) 554
MhlI GDGCHC 2 cut(s) 182, 657
MluCI AATT 3 cut(s) 554, 759, 926
MlyI GAGTC 2 cut(s) 98, 883
MnlI CCTC 7 cut(s) 205, 213, 246, 333, 344, 516, 553
Mph1103I ATGCAT 1 cut(s) 740
MroXI GAANNNNTTC 2 cut(s) 501, 926
MseI TTAA 5 cut(s) 44, 198, 681, 741, 825
MspI CCGG 2 cut(s) 575, 795
MspR9I CCNGG 1 cut(s) 796
MunI CAATTG 1 cut(s) 554
MwoI GCNNNNNNNGC 1 cut(s) 475
NciI CCSGG 1 cut(s) 796
NdeII GATC 7 cut(s) 22, 115, 255, 415, 661, 670, 780
NheI GCTAGC 1 cut(s) 469
NlaIII CATG 4 cut(s) 111, 262, 422, 836
NlaIV GGNNCC 1 cut(s) 694
NmuCI GTSAC 1 cut(s) 577
NsiI ATGCAT 1 cut(s) 740
PagI TCATGA 1 cut(s) 832
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PdmI GAANNNNTTC 2 cut(s) 501, 926
PfeI GAWTC 6 cut(s) 151, 301, 319, 433, 497, 534
PfoI TCCNGGA 1 cut(s) 794
PkrI GCNGC 1 cut(s) 16
PleI GAGTC 2 cut(s) 98, 883
PpsI GAGTC 2 cut(s) 98, 883
PshBI ATTAAT 1 cut(s) 741
Psp124BI GAGCTC 1 cut(s) 657
PspN4I GGNNCC 1 cut(s) 694
SacI GAGCTC 1 cut(s) 657
SaqAI TTAA 5 cut(s) 44, 198, 681, 741, 825
SatI GCNGC 1 cut(s) 15
Sau3AI GATC 7 cut(s) 22, 115, 255, 415, 661, 670, 780
SchI GAGTC 2 cut(s) 98, 883
ScrFI CCNGG 1 cut(s) 796
SduI GDGCHC 2 cut(s) 182, 657
SfaNI GCATC 5 cut(s) 49, 160, 652, 708, 725
SmlI CTYRAG 1 cut(s) 323
SmoI CTYRAG 1 cut(s) 323
Sse9I AATT 3 cut(s) 554, 759, 926
SspMI CTAG 5 cut(s) 183, 348, 470, 612, 893
SstI GAGCTC 1 cut(s) 657
StyD4I CCNGG 1 cut(s) 794
TaaI ACNGT 2 cut(s) 295, 770
TaiI ACGT 3 cut(s) 76, 141, 621
TaqI TCGA 5 cut(s) 126, 168, 205, 284, 508
TasI AATT 3 cut(s) 554, 759, 926
TfiI GAWTC 6 cut(s) 151, 301, 319, 433, 497, 534
Tru1I TTAA 5 cut(s) 44, 198, 681, 741, 825
Tru9I TTAA 5 cut(s) 44, 198, 681, 741, 825
TseFI GTSAC 1 cut(s) 577
TseI GCWGC 1 cut(s) 14
Tsp45I GTSAC 1 cut(s) 577
TspDTI ATGAA 4 cut(s) 112, 531, 821, 849
TspGWI ACGGA 5 cut(s) 114, 302, 546, 705, 854
VspI ATTAAT 1 cut(s) 741
XapI RAATTY 2 cut(s) 759, 926
XbaI TCTAGA 1 cut(s) 892
XmnI GAANNNNTTC 2 cut(s) 501, 926
XspI CTAG 5 cut(s) 183, 348, 470, 612, 893
Zsp2I ATGCAT 1 cut(s) 740
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.