AT1G60380
NAC Family

NAC domain-containing protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
22246455 .. 22247411
957 bp
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UTR
Exon/CDS
Intron
AT1G60380.1

Sequence Viewer

Length: 957 bp
ATGGCGGACACACTGCTCAACGCAGAAGACGAAGTAATAATCTCACGTTATCTGAAGCCTATGATCGTTAACAGAGTATCATGGCCTGATCTCTTCATCGAAGACGCAGACGTGTTCAACAAGGATCCATATGTGAAGTTCCATGCTGAGATCCCTAGCTTCGTGATCGTTAAACCACGAACAAAGGCTTGTGGTAAAACCGATGGATGTGATTCGGGTTGCTGGAGGATCATTGGTCGTGATAAGCTGATAAAGTCGGAGGAGACTGGTAAGATTCTAGGGTTCAAGAAGATACTCAAGTTCTGCCTAAAGTGGAAACCTAGAGAATACAAGAGAAGTTTGGTAATGGAAGAGTATAGGCTTACCAATAACTTCAACTGGAAGCAAGATCATGTGATTTGCAAGATTCGGCTTTTGTTTGAAGCAGAAATTAGTTTCTTGCTAGCCAAGCATTTCTACACTACATCAGACTCACTTCCTCGAAATGTGCTGTTGCCAGCTTATGGATTCTGTTCACCAGATAAACAAGAGGAGGACGAATTTTATCCGGTGACGATAATGATTTCAGAAGGAAAAGATTGGCCTAGCTACGTTACCAACAACGTGTATTGTCTGCATCCATCGGAGCTTGTGAATGTTCACGATGGGAAGTTTCATGATAACGGAATCTGCATCTTCGCTAACAGGACTTGTGGTGTAACCGATAAATGCAATGAAGGTTACTGGAAGATTAAGCACCGTGAGAAGCTGATCATGTCACGGTACGGGCAGACCATTGGTTGGAAGAAAGTTTTTCAGTTTTATGAAACGGAGAAAGAAAGACATTTTGGTAATGGAGAAGAAGTGAAGGTAACTTGGACTCTAAAAGAGTATAGGCTTACCAGAAAAATGAACAAGAATAAAGTGGTGTGCGTTATCAAGTATAAGGTAAAGTGTTTACCGAGGATAACTAGCTAG

Protein Analysis

318

Amino Acids

37.4

Weight (kDa)

9.03

Isoelectric Point (pI)

28.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 9 - 121 1.6e-09 No apical meristem (NAM) protein
NAM PF02365 194 - 293 5.8e-10 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0020216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G60240 AT1G60280 AT1G60300 AT1G60340 AT1G60350 AT1G60380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 503, 780
AciI CCGC 1 cut(s) 5
AclWI GGATC 4 cut(s) 119, 132, 145, 236
AcsI RAATTY 1 cut(s) 539
AcuI CTGAAG 1 cut(s) 74
AfaI GTAC 1 cut(s) 764
AfiI CCNNNNNNNGG 2 cut(s) 503, 780
AflIII ACRYGT 2 cut(s) 111, 603
AgsI TTSAA 4 cut(s) 118, 286, 376, 422
AjiI CACGTC 1 cut(s) 112
AjuI GAANNNNNNNTTGG 2 cut(s) 810, 842
AluBI AGCT 7 cut(s) 159, 247, 500, 588, 628, 748, 954
AluI AGCT 7 cut(s) 159, 247, 500, 588, 628, 748, 954
Alw26I GTCTC 1 cut(s) 257
AlwI GGATC 4 cut(s) 119, 132, 145, 236
AoxI GGCC 2 cut(s) 83, 581
ApoI RAATTY 1 cut(s) 539
AsuHPI GGTGA 2 cut(s) 507, 562
AsuNHI GCTAGC 1 cut(s) 442
BaeI ACNNNNGTAYC 2 cut(s) 284, 317
BamHI GGATCC 1 cut(s) 124
BbsI GAAGAC 2 cut(s) 33, 108
BccI CCATC 3 cut(s) 197, 628, 638
BclI TGATCA 1 cut(s) 750
BcoDI GTCTC 1 cut(s) 257
BfaI CTAG 7 cut(s) 156, 278, 321, 443, 585, 951, 955
BmgBI CACGTC 1 cut(s) 112
BmiI GGNNCC 1 cut(s) 126
BmsI GCATC 2 cut(s) 625, 681
BmtI GCTAGC 1 cut(s) 446
BpiI GAAGAC 2 cut(s) 33, 108
BpmI CTGGAG 1 cut(s) 244
BpuEI CTTGAG 1 cut(s) 281
BsaJI CCNNGG 1 cut(s) 941
BsaWI WCCGGW 1 cut(s) 547
BsaXI ACNNNNNCTCC 2 cut(s) 828, 858
Bsc4I CCNNNNNNNGG 2 cut(s) 503, 780
Bse1I ACTGG 3 cut(s) 271, 383, 728
Bse3DI GCAATG 1 cut(s) 718
BseDI CCNNGG 1 cut(s) 941
BseGI GGATG 2 cut(s) 212, 616
BseLI CCNNNNNNNGG 2 cut(s) 503, 780
BseMI GCAATG 1 cut(s) 718
BseMII CTCAG 1 cut(s) 138
BseNI ACTGG 3 cut(s) 271, 383, 728
BseRI GAGGAG 2 cut(s) 275, 545
BshFI GGCC 2 cut(s) 85, 583
BsiSI CCGG 1 cut(s) 548
BslI CCNNNNNNNGG 2 cut(s) 503, 780
BsmAI GTCTC 1 cut(s) 257
BsnI GGCC 2 cut(s) 85, 583
Bsp143I GATC 8 cut(s) 63, 88, 124, 150, 165, 228, 388, 750
BspACI CCGC 1 cut(s) 5
BspANI GGCC 2 cut(s) 85, 583
BspCNI CTCAG 1 cut(s) 139
BspHI TCATGA 1 cut(s) 655
BspLI GGNNCC 1 cut(s) 126
BspOI GCTAGC 1 cut(s) 446
BspPI GGATC 4 cut(s) 119, 132, 145, 236
BsrDI GCAATG 1 cut(s) 718
BsrI ACTGG 3 cut(s) 271, 383, 728
BssECI CCNNGG 1 cut(s) 941
BssMI GATC 8 cut(s) 63, 88, 124, 150, 165, 228, 388, 750
Bst4CI ACNGT 2 cut(s) 740, 762
Bst6I CTCTTC 2 cut(s) 98, 345
BstC8I GCNNGC 2 cut(s) 444, 498
BstDEI CTNAG 1 cut(s) 147
BstF5I GGATG 2 cut(s) 212, 616
BstKTI GATC 8 cut(s) 66, 91, 127, 153, 168, 231, 391, 753
BstMAI GTCTC 1 cut(s) 257
BstMBI GATC 8 cut(s) 63, 88, 124, 150, 165, 228, 388, 750
BstMWI GCNNNNNNNGC 1 cut(s) 448
BstV2I GAAGAC 2 cut(s) 33, 108
BstX2I RGATCY 2 cut(s) 124, 150
BstYI RGATCY 2 cut(s) 124, 150
BsuRI GGCC 2 cut(s) 85, 583
BtrI CACGTC 1 cut(s) 112
BtsCI GGATG 2 cut(s) 212, 616
BtsI GCAGTG 1 cut(s) 11
BtsIMutI CAGTG 1 cut(s) 11
Cac8I GCNNGC 2 cut(s) 444, 498
CciI TCATGA 1 cut(s) 655
CseI GACGC 1 cut(s) 113
Csp6I GTAC 1 cut(s) 763
CviAII CATG 5 cut(s) 81, 143, 392, 656, 754
CviQI GTAC 1 cut(s) 763
DdeI CTNAG 1 cut(s) 147
DpnI GATC 8 cut(s) 65, 90, 126, 152, 167, 230, 390, 752
DpnII GATC 8 cut(s) 63, 88, 124, 150, 165, 228, 388, 750
Eam1104I CTCTTC 2 cut(s) 98, 345
EarI CTCTTC 2 cut(s) 98, 345
EciI GGCGGA 1 cut(s) 20
Eco57I CTGAAG 1 cut(s) 74
FaeI CATG 5 cut(s) 84, 146, 395, 659, 757
FatI CATG 5 cut(s) 80, 142, 391, 655, 753
FauNDI CATATG 1 cut(s) 130
FbaI TGATCA 1 cut(s) 750
FokI GGATG 2 cut(s) 219, 603
FspBI CTAG 7 cut(s) 156, 278, 321, 443, 585, 951, 955
GsuI CTGGAG 1 cut(s) 244
HaeIII GGCC 2 cut(s) 85, 583
HapII CCGG 1 cut(s) 548
HgaI GACGC 1 cut(s) 113
Hin1II CATG 5 cut(s) 84, 146, 395, 659, 757
HincII GTYRAC 1 cut(s) 70
HindII GTYRAC 1 cut(s) 70
HinfI GANTC 7 cut(s) 212, 274, 406, 470, 507, 666, 859
HpaI GTTAAC 1 cut(s) 70
HpaII CCGG 1 cut(s) 548
HphI GGTGA 2 cut(s) 507, 562
Hpy166II GTNNAC 4 cut(s) 70, 515, 640, 938
Hpy188I TCNGA 5 cut(s) 54, 259, 469, 568, 625
Hpy188III TCNNGA 5 cut(s) 163, 239, 286, 641, 656
Hpy8I GTNNAC 4 cut(s) 70, 515, 640, 938
HpyAV CCTTC 3 cut(s) 563, 710, 841
HpyCH4III ACNGT 2 cut(s) 740, 762
HpyCH4IV ACGT 4 cut(s) 46, 111, 591, 603
HpyCH4V TGCA 4 cut(s) 402, 616, 672, 711
HpyF10VI GCNNNNNNNGC 1 cut(s) 448
HpyF3I CTNAG 1 cut(s) 147
HpySE526I ACGT 4 cut(s) 46, 111, 591, 603
Hsp92II CATG 5 cut(s) 84, 146, 395, 659, 757
Ksp22I TGATCA 1 cut(s) 750
KspAI GTTAAC 1 cut(s) 70
Kzo9I GATC 8 cut(s) 63, 88, 124, 150, 165, 228, 388, 750
LmnI GCTCC 1 cut(s) 625
LweI GCATC 2 cut(s) 625, 681
MaeI CTAG 7 cut(s) 156, 278, 321, 443, 585, 951, 955
MaeII ACGT 4 cut(s) 46, 111, 591, 603
MaeIII GTNAC 6 cut(s) 550, 592, 697, 719, 756, 850
MalI GATC 8 cut(s) 65, 90, 126, 152, 167, 230, 390, 752
MboI GATC 8 cut(s) 63, 88, 124, 150, 165, 228, 388, 750
MboII GAAGA 9 cut(s) 38, 85, 113, 301, 362, 667, 739, 796, 851
MflI RGATCY 2 cut(s) 124, 150
MluCI AATT 2 cut(s) 429, 539
MlyI GAGTC 2 cut(s) 464, 853
MmeI TCCRAC 2 cut(s) 237, 761
MnlI CCTC 6 cut(s) 219, 253, 489, 523, 526, 936
MseI TTAA 3 cut(s) 69, 171, 732
MspI CCGG 1 cut(s) 548
MwoI GCNNNNNNNGC 1 cut(s) 448
NdeI CATATG 1 cut(s) 130
NdeII GATC 8 cut(s) 63, 88, 124, 150, 165, 228, 388, 750
NheI GCTAGC 1 cut(s) 442
NlaIII CATG 5 cut(s) 84, 146, 395, 659, 757
NlaIV GGNNCC 1 cut(s) 126
NmuCI GTSAC 2 cut(s) 550, 756
PagI TCATGA 1 cut(s) 655
PcsI WCGNNNNNNNCGW 1 cut(s) 27
PfeI GAWTC 5 cut(s) 212, 274, 406, 507, 666
PflMI CCANNNNNTGG 2 cut(s) 503, 780
PleI GAGTC 2 cut(s) 464, 853
PpsI GAGTC 2 cut(s) 464, 853
PspN4I GGNNCC 1 cut(s) 126
PsuI RGATCY 2 cut(s) 124, 150
RsaI GTAC 1 cut(s) 764
RsaNI GTAC 1 cut(s) 763
SaqAI TTAA 3 cut(s) 69, 171, 732
Sau3AI GATC 8 cut(s) 63, 88, 124, 150, 165, 228, 388, 750
SchI GAGTC 2 cut(s) 464, 853
SfaNI GCATC 2 cut(s) 625, 681
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
Sse9I AATT 2 cut(s) 429, 539
SsiI CCGC 1 cut(s) 5
SspMI CTAG 7 cut(s) 156, 278, 321, 443, 585, 951, 955
TaaI ACNGT 2 cut(s) 740, 762
TaiI ACGT 4 cut(s) 49, 114, 594, 606
TaqI TCGA 2 cut(s) 99, 481
TasI AATT 2 cut(s) 429, 539
TfiI GAWTC 5 cut(s) 212, 274, 406, 507, 666
Tru1I TTAA 3 cut(s) 69, 171, 732
Tru9I TTAA 3 cut(s) 69, 171, 732
TscAI CASTG 1 cut(s) 18
TseFI GTSAC 2 cut(s) 550, 756
Tsp45I GTSAC 2 cut(s) 550, 756
TspDTI ATGAA 5 cut(s) 85, 644, 729, 819, 905
TspGWI ACGGA 2 cut(s) 678, 824
TspRI CASTG 1 cut(s) 18
Van91I CCANNNNNTGG 2 cut(s) 503, 780
XapI RAATTY 1 cut(s) 539
XspI CTAG 7 cut(s) 156, 278, 321, 443, 585, 951, 955
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.