Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0020216

Physical Location & Seq

Genomic Coordinates Reverse (-)

22238734 .. 22240399

Gene Structure 1666 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G60340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGAAGATAACGACGCAGCTTATGATCAAGTCAAATCCGAACTGTTAAACTCAGAAGACGAAGTAATAATCTCACGTTATCTGAAGCCTATGGTCGTTAACGGAGATTCTTGGCCAGATCACTTCATCGAAGACGCAAACGTGTTCACCAAGAATCCAAATGAGGTGTTCAATTCTGAGAGACCTAGATTCGTTATCGTTAAACCACGAACAGAGGCTTGTGGTAAGACCGATGGATGTGAATCTGGTTGCTGGAGGACCATGGGTCGTGATAAACTGATAAAGTCGGAGGAGACTGGGAAGATTCTAGGGTTCAAGAAGATTCTCAAGTTTTGCATAAAGTGGAAACCTATAGAATACAAGAGAAGTTGGGTAATGGAAGAGTATAGGCTTACCAATAACTTGAACTGGAAGCAAGATCATGTGATTTGCAAGATTCGGCTTTTGTTTGAAGCAGAAATTAGTTTCTTGCTAGCCAAGCATTTCTACACTACGTCAGAATCACTTCTTCGACATGAGCTATTGCCATCTTATGGATATTTATCCAATACACAAGAGGAGGATGAATTTTATCTGAAGACGATAATGACTTCGGAAGGAAACGATTGGCCTAGCTACGTTACCAACAACGTGTACTGTCTTCATCCATTGGAGCTTGTGGATCTTCAAGATGTGATGTTTCAAAGTTACGGAACCTGCATCTTCGCTAACGGGACTTGTGGTGAATCTGATAAATGCGATGGTGGTTACTGGAAGATCCTGCACGGTGATAAGCTGATCAAGTCAAATTTCGGGATGGTCACTGGTTTCAAGAAGGTATTTGAGTTCTATGAAACGGTGATACATAGATATTTTTGTGATGGAGAAGAAGTGAAGGAAGAAACAGAGAGGTTAGGTCATCAACGTTGCCAAGGCTTGTTGTTGCCACACCGTCGTGGCCATGTACAAACCAAGAGTTGCGGTGTCGTCACCGTGAAGGAGAAGAGGAGTTTGGTAGAGCAACCGGAGGAGATTGTCGCTGCACCTGAGACACCACGCCAAGGAAAAAGTGAGCATAATGATCCACTAAAGCGAAAGAAAGCGATTGGTTGCGTGGGAGAGAAAGCTGAGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009835 GO:0009889 GO:0009908 GO:0009987 GO:0010150 GO:0010154 GO:0010468 GO:0010556 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0080090 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

371

Amino Acids

42.93

Weight (kDa)

5.95

Isoelectric Point (pI)

37.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	19 - 131	4.1e-14	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0020216)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60240 AT1G60280 AT1G60300 AT1G60340 AT1G60350 AT1G60380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	704
AccB7I	CCANNNNNTGG	1 cut(s)	533
AciI	CCGC	1 cut(s)	960
AclI	AACGTT	1 cut(s)	904
AclWI	GGATC	3 cut(s)	669, 751, 1055
AcoI	YGGCCR	2 cut(s)	113, 937
AcsI	RAATTY	2 cut(s)	566, 787
AcuI	CTGAAG	2 cut(s)	104, 596
AfaI	GTAC	2 cut(s)	635, 945
AfiI	CCNNNNNNNGG	2 cut(s)	533, 1040
AflIII	ACRYGT	2 cut(s)	141, 630
AgsI	TTSAA	7 cut(s)	172, 316, 406, 452, 668, 683, 811
AhdI	GACNNNNNGTC	1 cut(s)	264
AjuI	GAANNNNNNNTTGG	2 cut(s)	974, 1006
AleI	CACNNNNGTG	1 cut(s)	933
AluBI	AGCT	6 cut(s)	20, 520, 615, 655, 775, 1106
AluI	AGCT	6 cut(s)	20, 520, 615, 655, 775, 1106
Alw26I	GTCTC	3 cut(s)	175, 287, 1022
AlwI	GGATC	3 cut(s)	669, 751, 1055
AoxI	GGCC	3 cut(s)	113, 608, 937
ApeKI	GCWGC	2 cut(s)	17, 1019
ApoI	RAATTY	2 cut(s)	566, 787
Asp700I	GAANNNNTTC	1 cut(s)	504
AspS9I	GGNCC	1 cut(s)	258
AsuHPI	GGTGA	5 cut(s)	139, 734, 779, 850, 961
AsuNHI	GCTAGC	1 cut(s)	472
AvaII	GGWCC	1 cut(s)	258
BalI	TGGCCA	2 cut(s)	115, 939
BbsI	GAAGAC	4 cut(s)	63, 138, 584, 632
BbvI	GCAGC	2 cut(s)	29, 1006
BccI	CCATC	5 cut(s)	227, 535, 734, 790, 854
BclI	TGATCA	2 cut(s)	25, 777
BcoDI	GTCTC	3 cut(s)	175, 287, 1022
BfaI	CTAG	4 cut(s)	186, 308, 473, 612
BfmI	CTRYAG	1 cut(s)	351
BfuAI	ACCTGC	1 cut(s)	704
BisI	GCNGC	2 cut(s)	18, 1020
BlsI	GCNGC	2 cut(s)	19, 1021
Bme18I	GGWCC	1 cut(s)	258
BmeRI	GACNNNNNGTC	1 cut(s)	264
BmgT120I	GGNCC	1 cut(s)	258
BmiI	GGNNCC	1 cut(s)	694
BmrI	ACTGGG	1 cut(s)	306
BmsI	GCATC	1 cut(s)	708
BmtI	GCTAGC	1 cut(s)	476
BmuI	ACTGGG	1 cut(s)	306
BpiI	GAAGAC	4 cut(s)	63, 138, 584, 632
BpmI	CTGGAG	1 cut(s)	274
BpuEI	CTTGAG	1 cut(s)	311
BsaBI	GATNNNNATC	2 cut(s)	241, 541
BsaI	GGTCTC	1 cut(s)	175
BsaJI	CCNNGG	3 cut(s)	261, 910, 1039
BsaWI	WCCGGW	1 cut(s)	1003
BsaXI	ACNNNNNCTCC	2 cut(s)	855, 885
Bsc4I	CCNNNNNNNGG	2 cut(s)	533, 1040
Bse1I	ACTGG	4 cut(s)	301, 413, 755, 808
Bse8I	GATNNNNATC	2 cut(s)	241, 541
BseDI	CCNNGG	3 cut(s)	261, 910, 1039
BseGI	GGATG	4 cut(s)	242, 568, 643, 801
BseJI	GATNNNNATC	2 cut(s)	241, 541
BseLI	CCNNNNNNNGG	2 cut(s)	533, 1040
BseMII	CTCAG	4 cut(s)	66, 168, 1017, 1098
BseNI	ACTGG	4 cut(s)	301, 413, 755, 808
BseRI	GAGGAG	4 cut(s)	305, 572, 1000, 1022
BseXI	GCAGC	2 cut(s)	29, 1006
BsgI	GTGCAG	2 cut(s)	746, 1005
BshFI	GGCC	3 cut(s)	115, 610, 939
BsiSI	CCGG	1 cut(s)	1004
BslFI	GGGAC	1 cut(s)	727
BslI	CCNNNNNNNGG	2 cut(s)	533, 1040
BsmAI	GTCTC	3 cut(s)	175, 287, 1022
BsmFI	GGGAC	1 cut(s)	727
BsnI	GGCC	3 cut(s)	115, 610, 939
Bso31I	GGTCTC	1 cut(s)	175
Bsp1407I	TGTACA	1 cut(s)	943
Bsp143I	GATC	7 cut(s)	25, 118, 418, 661, 756, 777, 1060
Bsp19I	CCATGG	1 cut(s)	261
BspACI	CCGC	1 cut(s)	960
BspANI	GGCC	3 cut(s)	115, 610, 939
BspCNI	CTCAG	4 cut(s)	65, 169, 1018, 1099
BspLI	GGNNCC	1 cut(s)	694
BspMI	ACCTGC	1 cut(s)	704
BspOI	GCTAGC	1 cut(s)	476
BspPI	GGATC	3 cut(s)	669, 751, 1055
BspTNI	GGTCTC	1 cut(s)	175
BsrGI	TGTACA	1 cut(s)	943
BsrI	ACTGG	4 cut(s)	301, 413, 755, 808
BssECI	CCNNGG	3 cut(s)	261, 910, 1039
BssMI	GATC	7 cut(s)	25, 118, 418, 661, 756, 777, 1060
BssT1I	CCWWGG	3 cut(s)	261, 910, 1039
Bst4CI	ACNGT	6 cut(s)	45, 638, 767, 838, 932, 973
Bst6I	CTCTTC	2 cut(s)	375, 977
BstAUI	TGTACA	1 cut(s)	943
BstC8I	GCNNGC	1 cut(s)	474
BstDEI	CTNAG	4 cut(s)	52, 177, 1026, 1107
BstDSI	CCRYGG	1 cut(s)	261
BstF5I	GGATG	4 cut(s)	242, 568, 643, 801
BstKTI	GATC	7 cut(s)	28, 121, 421, 664, 759, 780, 1063
BstMAI	GTCTC	3 cut(s)	175, 287, 1022
BstMBI	GATC	7 cut(s)	25, 118, 418, 661, 756, 777, 1060
BstMWI	GCNNNNNNNGC	1 cut(s)	478
BstSFI	CTRYAG	1 cut(s)	351
BstV1I	GCAGC	2 cut(s)	29, 1006
BstV2I	GAAGAC	4 cut(s)	63, 138, 584, 632
BstX2I	RGATCY	2 cut(s)	661, 756
BstYI	RGATCY	2 cut(s)	661, 756
BsuRI	GGCC	3 cut(s)	115, 610, 939
BtgI	CCRYGG	1 cut(s)	261
BtgZI	GCGATG	1 cut(s)	753
BtsCI	GGATG	4 cut(s)	242, 568, 643, 801
BtsIMutI	CAGTG	1 cut(s)	801
BveI	ACCTGC	1 cut(s)	704
Cac8I	GCNNGC	1 cut(s)	474
Cfr13I	GGNCC	1 cut(s)	258
CseI	GACGC	2 cut(s)	23, 143
Csp6I	GTAC	2 cut(s)	634, 944
CviAII	CATG	4 cut(s)	262, 422, 515, 941
CviQI	GTAC	2 cut(s)	634, 944
DdeI	CTNAG	4 cut(s)	52, 177, 1026, 1107
DpnI	GATC	7 cut(s)	27, 120, 420, 663, 758, 779, 1062
DpnII	GATC	7 cut(s)	25, 118, 418, 661, 756, 777, 1060
DriI	GACNNNNNGTC	1 cut(s)	264
EaeI	YGGCCR	2 cut(s)	113, 937
Eam1104I	CTCTTC	2 cut(s)	375, 977
Eam1105I	GACNNNNNGTC	1 cut(s)	264
EarI	CTCTTC	2 cut(s)	375, 977
Eco130I	CCWWGG	3 cut(s)	261, 910, 1039
Eco31I	GGTCTC	1 cut(s)	175
Eco47I	GGWCC	1 cut(s)	258
Eco57I	CTGAAG	2 cut(s)	104, 596
EcoT14I	CCWWGG	3 cut(s)	261, 910, 1039
ErhI	CCWWGG	3 cut(s)	261, 910, 1039
FaeI	CATG	4 cut(s)	265, 425, 518, 944
FaqI	GGGAC	1 cut(s)	727
FatI	CATG	4 cut(s)	261, 421, 514, 940
FbaI	TGATCA	2 cut(s)	25, 777
Fnu4HI	GCNGC	2 cut(s)	18, 1020
FokI	GGATG	4 cut(s)	249, 575, 630, 808
Fsp4HI	GCNGC	2 cut(s)	18, 1020
FspBI	CTAG	4 cut(s)	186, 308, 473, 612
GluI	GCNGC	2 cut(s)	18, 1020
GsuI	CTGGAG	1 cut(s)	274
HaeIII	GGCC	3 cut(s)	115, 610, 939
HapII	CCGG	1 cut(s)	1004
HgaI	GACGC	2 cut(s)	23, 143
Hin1II	CATG	4 cut(s)	265, 425, 518, 944
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HinfI	GANTC	9 cut(s)	107, 154, 189, 242, 304, 322, 436, 500, 725
HpaI	GTTAAC	1 cut(s)	100
HpaII	CCGG	1 cut(s)	1004
HphI	GGTGA	5 cut(s)	139, 734, 779, 850, 961
Hpy166II	GTNNAC	3 cut(s)	100, 147, 634
Hpy188I	TCNGA	9 cut(s)	40, 55, 84, 178, 289, 499, 576, 595, 730
Hpy188III	TCNNGA	5 cut(s)	269, 316, 668, 793, 811
Hpy8I	GTNNAC	3 cut(s)	100, 147, 634
Hpy99I	CGWCG	2 cut(s)	17, 936
HpyAV	CCTTC	4 cut(s)	590, 808, 868, 970
HpyCH4III	ACNGT	6 cut(s)	45, 638, 767, 838, 932, 973
HpyCH4IV	ACGT	6 cut(s)	76, 141, 494, 618, 630, 904
HpyCH4V	TGCA	5 cut(s)	336, 432, 699, 763, 1022
HpyF10VI	GCNNNNNNNGC	1 cut(s)	478
HpyF3I	CTNAG	4 cut(s)	52, 177, 1026, 1107
HpySE526I	ACGT	6 cut(s)	76, 141, 494, 618, 630, 904
Hsp92II	CATG	4 cut(s)	265, 425, 518, 944
Ksp22I	TGATCA	2 cut(s)	25, 777
KspAI	GTTAAC	1 cut(s)	100
Kzo9I	GATC	7 cut(s)	25, 118, 418, 661, 756, 777, 1060
LmnI	GCTCC	1 cut(s)	652
Lsp1109I	GCAGC	2 cut(s)	29, 1006
LweI	GCATC	1 cut(s)	708
MaeI	CTAG	4 cut(s)	186, 308, 473, 612
MaeII	ACGT	6 cut(s)	76, 141, 494, 618, 630, 904
MaeIII	GTNAC	5 cut(s)	619, 686, 746, 799, 967
MalI	GATC	7 cut(s)	27, 120, 420, 663, 758, 779, 1062
MboI	GATC	7 cut(s)	25, 118, 418, 661, 756, 777, 1060
MflI	RGATCY	2 cut(s)	661, 756
MlsI	TGGCCA	2 cut(s)	115, 939
MluCI	AATT	4 cut(s)	172, 459, 566, 787
MluNI	TGGCCA	2 cut(s)	115, 939
MmeI	TCCRAC	1 cut(s)	267
MnlI	CCTC	9 cut(s)	157, 208, 249, 283, 550, 553, 882, 978, 1000
Mox20I	TGGCCA	2 cut(s)	115, 939
MroXI	GAANNNNTTC	1 cut(s)	504
MscI	TGGCCA	2 cut(s)	115, 939
MseI	TTAA	3 cut(s)	47, 99, 201
MslI	CAYNNNNRTG	1 cut(s)	933
Msp20I	TGGCCA	2 cut(s)	115, 939
MspI	CCGG	1 cut(s)	1004
MwoI	GCNNNNNNNGC	1 cut(s)	478
NcoI	CCATGG	1 cut(s)	261
NdeII	GATC	7 cut(s)	25, 118, 418, 661, 756, 777, 1060
NheI	GCTAGC	1 cut(s)	472
NlaIII	CATG	4 cut(s)	265, 425, 518, 944
NlaIV	GGNNCC	1 cut(s)	694
NmuCI	GTSAC	2 cut(s)	799, 967
OliI	CACNNNNGTG	1 cut(s)	933
PdmI	GAANNNNTTC	1 cut(s)	504
PfeI	GAWTC	9 cut(s)	107, 154, 189, 242, 304, 322, 436, 500, 725
PflMI	CCANNNNNTGG	1 cut(s)	533
PkrI	GCNGC	2 cut(s)	19, 1021
Psp1406I	AACGTT	1 cut(s)	904
PspN4I	GGNNCC	1 cut(s)	694
PspPI	GGNCC	1 cut(s)	258
PsuI	RGATCY	2 cut(s)	661, 756
RsaI	GTAC	2 cut(s)	635, 945
RsaNI	GTAC	2 cut(s)	634, 944
RseI	CAYNNNNRTG	1 cut(s)	933
SaqAI	TTAA	3 cut(s)	47, 99, 201
SatI	GCNGC	2 cut(s)	18, 1020
Sau3AI	GATC	7 cut(s)	25, 118, 418, 661, 756, 777, 1060
Sau96I	GGNCC	1 cut(s)	258
SfaNI	GCATC	1 cut(s)	708
SfcI	CTRYAG	1 cut(s)	351
SinI	GGWCC	1 cut(s)	258
SmiMI	CAYNNNNRTG	1 cut(s)	933
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
Sse9I	AATT	4 cut(s)	172, 459, 566, 787
SsiI	CCGC	1 cut(s)	960
SspMI	CTAG	4 cut(s)	186, 308, 473, 612
StyI	CCWWGG	3 cut(s)	261, 910, 1039
TaaI	ACNGT	6 cut(s)	45, 638, 767, 838, 932, 973
TaiI	ACGT	6 cut(s)	79, 144, 497, 621, 633, 907
TaqI	TCGA	2 cut(s)	129, 511
TaqII	GACCGA	1 cut(s)	245
TasI	AATT	4 cut(s)	172, 459, 566, 787
TatI	WGTACW	2 cut(s)	633, 943
TfiI	GAWTC	9 cut(s)	107, 154, 189, 242, 304, 322, 436, 500, 725
Tru1I	TTAA	3 cut(s)	47, 99, 201
Tru9I	TTAA	3 cut(s)	47, 99, 201
TscAI	CASTG	1 cut(s)	808
TseFI	GTSAC	2 cut(s)	799, 967
TseI	GCWGC	2 cut(s)	17, 1019
Tsp45I	GTSAC	2 cut(s)	799, 967
TspDTI	ATGAA	4 cut(s)	115, 579, 632, 846
TspGWI	ACGGA	2 cut(s)	117, 705
TspRI	CASTG	1 cut(s)	808
Van91I	CCANNNNNTGG	1 cut(s)	533
VpaK11BI	GGWCC	1 cut(s)	258
XapI	RAATTY	2 cut(s)	566, 787
XmnI	GAANNNNTTC	1 cut(s)	504
XspI	CTAG	4 cut(s)	186, 308, 473, 612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.