Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007965

Physical Location & Seq

Genomic Coordinates Forward (+)

22330894 .. 22333568

Gene Structure 2675 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G60620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGGGGACTAACGAAGTAACAAGGATTGTGACTGATGAAGAAAAGAGAGAAGCGAAGAACTTCAACATATTTGATCTCCCTGACGTTCCTACCGGACTTCCTCCGCATCTTGAGCTCCAGCGAACTCGCGTTGTCTGTAAGAAGGATTCTAATATTCATCCTACGGCTATCACTTTCTCGGGTGCCTATTCCTCTATGGGAGTGGACAACAGTGTGAGACTAGAAAACTTCTCTGAGGATTTCAAAGTTGATGTGATTAGTCTCACAGAGACAGATATGGTATTCGATATGATCGGTGTCCATGCAGGAATCGCTAATGCTTTCCGAAGAATCCTCTTAGCTGAGCTTCCTTCAATGGCTATTGAAAAAGTGTATGTAGCAAACAACACATCGGTTATTCAAGACGAAGTTCTTGCTCACAGGTTGGGTCTTATTCCAATTGCCGCAGATCCGAGACTCTTTGAATATTTATCTGAAAACGATCAGCCAAATGAAAAGAACACCATTGTTTTCAAACTCCATGTGAAATGTCTAAAAGGTGACCCGCGTCGTAAAGTCTTAACAAGCGAATTGAAATGGTTACCAAATGGAAGTGAGCTTATCAAAGAATCTGGAGGTTCAACCACAACGCCAAAAACTTACACTTCATTCAACCATAGCCAAGATTCCTTCCCTGAATTTGCTGAAAATCCTATCAGGCCAACCTTAAAAGATATCTTGATAGCAAAACTTGGCCCTGGCCAGGAAATCGAGCTTGAGGCTCATGCCGTTAAGGGCATTGGTAAAACACATGCAAAGTGGTCCCCAGTAGCAACGGCTTGGTATCGAATGCTTCCTGAGGTGGTTCTACTAAAGGAATTCGAGGGTAAACATGCCGAAGAACTCGTAAAAGTCTGCCCCAAGAAAGTTTTTGACATTGAAGACATGGGCCAAGGTAGGAAGAGGGCAACAGTAGCTCGGCCGCGTGATTGTTCGTTGTGTAGAGAATGCATAAGAGATGGAGTGGAATGGGAGGACCAAGTGGATCTGCGCCGTGTCAAGAACCATTTTATATTTACAATTGAGTCCACGGGATCACAGCCTCCGGAGGTTCTTTTCAACGAAGCAGTGAAGATATTGGAAGATAAATGTGAAAGAGTAATCTCTGAACTCTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0005730 GO:0005736 GO:0030880 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0055029 GO:0061695 GO:0070013 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

RNA_pol_A_bac RNA_pol_L

Protein Analysis

385

Amino Acids

43.37

Weight (kDa)

5.7

Isoelectric Point (pI)

38.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_L	PF01193	95 - 377	1.1e-21	RNA polymerase Rpb3/Rpb11 dimerisation domain
RNA_pol_A_bac	PF01000	130 - 266	6.9e-14	RNA polymerase Rpb3/RpoA insert domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007965)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60620 AT1G60620
fragaria_vesca	FvH4_3g42690 FvH4_3g42690
malus_domestica	MD03G1029700.v1.1 MD11G1033100.v1.1 MD11G1033500.v1.1
prunus_persica	Prupe.6G025800_v2.0.a1 Prupe.6G025800_v2.0.a1 Prupe.6G025800_v2.0.a1 Prupe.6G025800_v2.0.a1 Prupe.6G025800_v2.0.a1
pyrus_communis	pycom03g02470 pycom11g02880
rosa_chinensis	RchiOBHm_Chr5g0076331
rosa_laevigata	RLG00000036618
rosa_multiflora	Rmu_sc0002400.1_g000006
rosa_roxburghii	Rroxscaffold_1G00005480
rosa_rugosa	Rorug05G0447400
rosa_samantha	Rh5AG502300 Rh5BG524100 Rh5CG547700 Rh5DG536200
rosa_wichuraiana	Rw5G046610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	182
AccII	CGCG	3 cut(s)	129, 547, 964
AccIII	TCCGGA	1 cut(s)	1084
AciI	CCGC	4 cut(s)	104, 444, 545, 962
AclWI	GGATC	3 cut(s)	443, 1032, 1081
AcoI	YGGCCR	2 cut(s)	739, 959
AcsI	RAATTY	2 cut(s)	677, 857
AfiI	CCNNNNNNNGG	1 cut(s)	742
AjnI	CCWGG	2 cut(s)	736, 741
AluBI	AGCT	6 cut(s)	115, 341, 346, 598, 754, 956
AluI	AGCT	6 cut(s)	115, 341, 346, 598, 754, 956
Alw21I	GWGCWC	1 cut(s)	117
Alw26I	GTCTC	4 cut(s)	211, 263, 266, 448
AlwI	GGATC	3 cut(s)	443, 1032, 1081
Ama87I	CYCGRG	1 cut(s)	178
Aor13HI	TCCGGA	1 cut(s)	1084
AoxI	GGCC	5 cut(s)	698, 733, 739, 928, 959
ApoI	RAATTY	2 cut(s)	677, 857
Asp700I	GAANNNNTTC	1 cut(s)	59
AspLEI	GCGC	1 cut(s)	1032
AspS9I	GGNCC	4 cut(s)	734, 801, 928, 1015
AsuHPI	GGTGA	1 cut(s)	551
AvaI	CYCGRG	1 cut(s)	178
AvaII	GGWCC	2 cut(s)	801, 1015
AxyI	CCTNAGG	1 cut(s)	837
BalI	TGGCCA	1 cut(s)	741
BanI	GGYRCC	1 cut(s)	182
BanII	GRGCYC	1 cut(s)	117
BbsI	GAAGAC	1 cut(s)	927
Bbv12I	GWGCWC	1 cut(s)	117
BccI	CCATC	1 cut(s)	992
BceAI	ACGGC	4 cut(s)	180, 752, 831, 1017
BcgI	CGANNNNNNTGC	2 cut(s)	395, 429
BciT130I	CCWGG	2 cut(s)	738, 743
BcoDI	GTCTC	4 cut(s)	211, 263, 266, 448
BfaI	CTAG	1 cut(s)	221
BisI	GCNGC	2 cut(s)	444, 962
BlpI	GCTNAGC	1 cut(s)	342
BlsI	GCNGC	2 cut(s)	445, 963
Bme1390I	CCNGG	2 cut(s)	738, 743
Bme18I	GGWCC	2 cut(s)	801, 1015
BmeT110I	CYCGRG	1 cut(s)	178
BmgT120I	GGNCC	4 cut(s)	734, 801, 928, 1015
BmiI	GGNNCC	2 cut(s)	184, 803
BmrFI	CCNGG	2 cut(s)	738, 743
BmrI	ACTGGG	1 cut(s)	800
BmsI	GCATC	1 cut(s)	115
BmuI	ACTGGG	1 cut(s)	800
BoxI	GACNNNNGTC	1 cut(s)	546
BpiI	GAAGAC	1 cut(s)	927
BpmI	CTGGAG	2 cut(s)	101, 633
Bpu1102I	GCTNAGC	1 cut(s)	342
BpuEI	CTTGAG	2 cut(s)	131, 776
BsaJI	CCNNGG	3 cut(s)	736, 931, 1068
BsaWI	WCCGGW	2 cut(s)	92, 1084
Bsc4I	CCNNNNNNNGG	1 cut(s)	742
Bse1I	ACTGG	1 cut(s)	806
Bse21I	CCTNAGG	1 cut(s)	837
BseAI	TCCGGA	1 cut(s)	1084
BseBI	CCWGG	2 cut(s)	738, 743
BseDI	CCNNGG	3 cut(s)	736, 931, 1068
BseGI	GGATG	1 cut(s)	157
BseLI	CCNNNNNNNGG	1 cut(s)	742
BseMII	CTCAG	3 cut(s)	225, 333, 828
BseNI	ACTGG	1 cut(s)	806
BseX3I	CGGCCG	1 cut(s)	959
Bsh1236I	CGCG	3 cut(s)	129, 547, 964
Bsh1285I	CGRYCG	1 cut(s)	962
BshFI	GGCC	5 cut(s)	700, 735, 741, 930, 961
BshNI	GGYRCC	1 cut(s)	182
BsiEI	CGRYCG	1 cut(s)	962
BsiHKAI	GWGCWC	1 cut(s)	117
BsiHKCI	CYCGRG	1 cut(s)	178
BsiSI	CCGG	2 cut(s)	93, 1085
BslFI	GGGAC	2 cut(s)	19, 787
BslI	CCNNNNNNNGG	1 cut(s)	742
BsmAI	GTCTC	4 cut(s)	211, 263, 266, 448
BsmFI	GGGAC	2 cut(s)	19, 787
BsmI	GAATGC	2 cut(s)	834, 992
BsnI	GGCC	5 cut(s)	700, 735, 741, 930, 961
BsoBI	CYCGRG	1 cut(s)	178
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp13I	TCCGGA	1 cut(s)	1084
Bsp143I	GATC	6 cut(s)	73, 291, 448, 481, 1024, 1073
Bsp1720I	GCTNAGC	1 cut(s)	342
BspACI	CCGC	4 cut(s)	104, 444, 545, 962
BspANI	GGCC	5 cut(s)	700, 735, 741, 930, 961
BspCNI	CTCAG	3 cut(s)	226, 334, 829
BspEI	TCCGGA	1 cut(s)	1084
BspFNI	CGCG	3 cut(s)	129, 547, 964
BspLI	GGNNCC	2 cut(s)	184, 803
BspPI	GGATC	3 cut(s)	443, 1032, 1081
BspT107I	GGYRCC	1 cut(s)	182
BsrI	ACTGG	1 cut(s)	806
BssECI	CCNNGG	3 cut(s)	736, 931, 1068
BssMI	GATC	6 cut(s)	73, 291, 448, 481, 1024, 1073
BssT1I	CCWWGG	1 cut(s)	931
Bst2UI	CCWGG	2 cut(s)	738, 743
Bst4CI	ACNGT	2 cut(s)	212, 952
Bst6I	CTCTTC	1 cut(s)	935
BstDEI	CTNAG	4 cut(s)	234, 337, 342, 837
BstDSI	CCRYGG	1 cut(s)	1068
BstEII	GGTNACC	2 cut(s)	539, 579
BstF5I	GGATG	1 cut(s)	157
BstFNI	CGCG	3 cut(s)	129, 547, 964
BstHHI	GCGC	1 cut(s)	1032
BstKTI	GATC	6 cut(s)	76, 294, 451, 484, 1027, 1076
BstMAI	GTCTC	4 cut(s)	211, 263, 266, 448
BstMBI	GATC	6 cut(s)	73, 291, 448, 481, 1024, 1073
BstMCI	CGRYCG	1 cut(s)	962
BstMWI	GCNNNNNNNGC	3 cut(s)	112, 311, 953
BstNI	CCWGG	2 cut(s)	738, 743
BstNSI	RCATGY	2 cut(s)	794, 875
BstPAI	GACNNNNGTC	1 cut(s)	546
BstPI	GGTNACC	2 cut(s)	539, 579
BstSCI	CCNGG	2 cut(s)	736, 741
BstUI	CGCG	3 cut(s)	129, 547, 964
BstV2I	GAAGAC	1 cut(s)	927
BstX2I	RGATCY	2 cut(s)	448, 1024
BstYI	RGATCY	2 cut(s)	448, 1024
BstZI	CGGCCG	1 cut(s)	959
Bsu36I	CCTNAGG	1 cut(s)	837
BsuRI	GGCC	5 cut(s)	700, 735, 741, 930, 961
BtgI	CCRYGG	1 cut(s)	1068
BtsCI	GGATG	1 cut(s)	157
BtsI	GCAGTG	1 cut(s)	1113
BtsIMutI	CAGTG	2 cut(s)	217, 1113
CfoI	GCGC	1 cut(s)	1032
Cfr13I	GGNCC	4 cut(s)	734, 801, 928, 1015
CseI	GACGC	1 cut(s)	536
CviAII	CATG	6 cut(s)	302, 521, 764, 791, 872, 925
DdeI	CTNAG	4 cut(s)	234, 337, 342, 837
DpnI	GATC	6 cut(s)	75, 293, 450, 483, 1026, 1075
DpnII	GATC	6 cut(s)	73, 291, 448, 481, 1024, 1073
EaeI	YGGCCR	2 cut(s)	739, 959
EagI	CGGCCG	1 cut(s)	959
Eam1104I	CTCTTC	1 cut(s)	935
EarI	CTCTTC	1 cut(s)	935
Ecl136II	GAGCTC	1 cut(s)	115
EclXI	CGGCCG	1 cut(s)	959
Eco130I	CCWWGG	1 cut(s)	931
Eco24I	GRGCYC	1 cut(s)	117
Eco32I	GATATC	1 cut(s)	715
Eco47I	GGWCC	2 cut(s)	801, 1015
Eco52I	CGGCCG	1 cut(s)	959
Eco53kI	GAGCTC	1 cut(s)	115
Eco81I	CCTNAGG	1 cut(s)	837
Eco88I	CYCGRG	1 cut(s)	178
Eco91I	GGTNACC	2 cut(s)	539, 579
EcoICRI	GAGCTC	1 cut(s)	115
EcoO65I	GGTNACC	2 cut(s)	539, 579
EcoRI	GAATTC	1 cut(s)	857
EcoRII	CCWGG	2 cut(s)	736, 741
EcoRV	GATATC	1 cut(s)	715
EcoT14I	CCWWGG	1 cut(s)	931
EcoT22I	ATGCAT	1 cut(s)	992
EcoT38I	GRGCYC	1 cut(s)	117
ErhI	CCWWGG	1 cut(s)	931
FaeI	CATG	6 cut(s)	305, 524, 767, 794, 875, 928
FaqI	GGGAC	2 cut(s)	19, 787
FatI	CATG	6 cut(s)	301, 520, 763, 790, 871, 924
FauI	CCCGC	1 cut(s)	552
Fnu4HI	GCNGC	2 cut(s)	444, 962
FokI	GGATG	1 cut(s)	144
FriOI	GRGCYC	1 cut(s)	117
Fsp4HI	GCNGC	2 cut(s)	444, 962
FspBI	CTAG	1 cut(s)	221
GlaI	GCGC	1 cut(s)	1031
GluI	GCNGC	2 cut(s)	444, 962
GsuI	CTGGAG	2 cut(s)	101, 633
HaeIII	GGCC	5 cut(s)	700, 735, 741, 930, 961
HapII	CCGG	2 cut(s)	93, 1085
HgaI	GACGC	1 cut(s)	536
HhaI	GCGC	1 cut(s)	1032
Hin1II	CATG	6 cut(s)	305, 524, 767, 794, 875, 928
Hin6I	GCGC	1 cut(s)	1030
HinP1I	GCGC	1 cut(s)	1030
HinfI	GANTC	7 cut(s)	146, 309, 330, 456, 608, 665, 1064
HpaII	CCGG	2 cut(s)	93, 1085
HphI	GGTGA	1 cut(s)	551
Hpy166II	GTNNAC	3 cut(s)	205, 869, 1068
Hpy188I	TCNGA	5 cut(s)	235, 326, 453, 475, 1147
Hpy188III	TCNNGA	8 cut(s)	110, 401, 612, 718, 836, 1039, 1085, 1155
Hpy8I	GTNNAC	3 cut(s)	205, 869, 1068
Hpy99I	CGWCG	1 cut(s)	552
HpyAV	CCTTC	3 cut(s)	136, 360, 679
HpyCH4III	ACNGT	2 cut(s)	212, 952
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	3 cut(s)	305, 794, 990
HpyF10VI	GCNNNNNNNGC	3 cut(s)	112, 311, 953
HpyF3I	CTNAG	4 cut(s)	234, 337, 342, 837
HpySE526I	ACGT	1 cut(s)	84
Hsp92II	CATG	6 cut(s)	305, 524, 767, 794, 875, 928
HspAI	GCGC	1 cut(s)	1030
Kpn2I	TCCGGA	1 cut(s)	1084
Kzo9I	GATC	6 cut(s)	73, 291, 448, 481, 1024, 1073
LmnI	GCTCC	1 cut(s)	120
LweI	GCATC	1 cut(s)	115
MaeI	CTAG	1 cut(s)	221
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	4 cut(s)	16, 28, 539, 579
MalI	GATC	6 cut(s)	75, 293, 450, 483, 1026, 1075
MboI	GATC	6 cut(s)	73, 291, 448, 481, 1024, 1073
MboII	GAAGA	8 cut(s)	50, 67, 339, 890, 932, 952, 1123, 1133
MfeI	CAATTG	2 cut(s)	438, 1059
MflI	RGATCY	2 cut(s)	448, 1024
MhlI	GDGCHC	1 cut(s)	117
MlsI	TGGCCA	1 cut(s)	741
MluCI	AATT	5 cut(s)	438, 569, 677, 857, 1059
MluNI	TGGCCA	1 cut(s)	741
MlyI	GAGTC	2 cut(s)	450, 1073
Mox20I	TGGCCA	1 cut(s)	741
Mph1103I	ATGCAT	1 cut(s)	992
MroI	TCCGGA	1 cut(s)	1084
MroXI	GAANNNNTTC	1 cut(s)	59
MscI	TGGCCA	1 cut(s)	741
MseI	TTAA	3 cut(s)	560, 707, 771
Msp20I	TGGCCA	1 cut(s)	741
MspI	CCGG	2 cut(s)	93, 1085
MspR9I	CCNGG	2 cut(s)	738, 743
MunI	CAATTG	2 cut(s)	438, 1059
Mva1269I	GAATGC	2 cut(s)	834, 992
MvaI	CCWGG	2 cut(s)	738, 743
MvnI	CGCG	3 cut(s)	129, 547, 964
MwoI	GCNNNNNNNGC	3 cut(s)	112, 311, 953
NdeII	GATC	6 cut(s)	73, 291, 448, 481, 1024, 1073
NlaIII	CATG	6 cut(s)	305, 524, 767, 794, 875, 928
NlaIV	GGNNCC	2 cut(s)	184, 803
NmeAIII	GCCGAG	1 cut(s)	937
NmuCI	GTSAC	2 cut(s)	28, 539
NsiI	ATGCAT	1 cut(s)	992
NspI	RCATGY	2 cut(s)	794, 875
PctI	GAATGC	2 cut(s)	834, 992
PdmI	GAANNNNTTC	1 cut(s)	59
PfeI	GAWTC	5 cut(s)	146, 309, 330, 608, 665
PkrI	GCNGC	2 cut(s)	445, 963
PleI	GAGTC	2 cut(s)	450, 1072
PpsI	GAGTC	2 cut(s)	450, 1072
PshAI	GACNNNNGTC	1 cut(s)	546
Psp124BI	GAGCTC	1 cut(s)	117
Psp6I	CCWGG	2 cut(s)	736, 741
PspEI	GGTNACC	2 cut(s)	539, 579
PspGI	CCWGG	2 cut(s)	736, 741
PspN4I	GGNNCC	2 cut(s)	184, 803
PspPI	GGNCC	4 cut(s)	734, 801, 928, 1015
PsuI	RGATCY	2 cut(s)	448, 1024
SacI	GAGCTC	1 cut(s)	117
SaqAI	TTAA	3 cut(s)	560, 707, 771
SatI	GCNGC	2 cut(s)	444, 962
Sau3AI	GATC	6 cut(s)	73, 291, 448, 481, 1024, 1073
Sau96I	GGNCC	4 cut(s)	734, 801, 928, 1015
SchI	GAGTC	2 cut(s)	450, 1073
ScrFI	CCNGG	2 cut(s)	738, 743
SduI	GDGCHC	1 cut(s)	117
SfaNI	GCATC	1 cut(s)	115
SinI	GGWCC	2 cut(s)	801, 1015
SmlI	CTYRAG	2 cut(s)	110, 755
SmoI	CTYRAG	2 cut(s)	110, 755
Sse9I	AATT	5 cut(s)	438, 569, 677, 857, 1059
SsiI	CCGC	4 cut(s)	104, 444, 545, 962
SspI	AATATT	2 cut(s)	154, 467
SspMI	CTAG	1 cut(s)	221
SstI	GAGCTC	1 cut(s)	117
StyD4I	CCNGG	2 cut(s)	736, 741
StyI	CCWWGG	1 cut(s)	931
TaaI	ACNGT	2 cut(s)	212, 952
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	4 cut(s)	285, 750, 826, 861
TasI	AATT	5 cut(s)	438, 569, 677, 857, 1059
TauI	GCSGC	2 cut(s)	446, 964
TfiI	GAWTC	5 cut(s)	146, 309, 330, 608, 665
Tru1I	TTAA	3 cut(s)	560, 707, 771
Tru9I	TTAA	3 cut(s)	560, 707, 771
TscAI	CASTG	2 cut(s)	217, 1113
TseFI	GTSAC	2 cut(s)	28, 539
Tsp45I	GTSAC	2 cut(s)	28, 539
TspDTI	ATGAA	4 cut(s)	51, 146, 507, 636
TspRI	CASTG	2 cut(s)	217, 1113
VpaK11BI	GGWCC	2 cut(s)	801, 1015
XapI	RAATTY	2 cut(s)	677, 857
XceI	RCATGY	2 cut(s)	794, 875
XmnI	GAANNNNTTC	1 cut(s)	59
XspI	CTAG	1 cut(s)	221
Zsp2I	ATGCAT	1 cut(s)	992

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.