Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002400.1

Orthogroup ID

OG0007965

Physical Location & Seq

Genomic Coordinates Forward (+)

20017 .. 23706

Gene Structure 3690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002400.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

atgtcgtccagtaacgaaaatacgacctcaagctctgggtctgagcaatcagattctggaaacgacacactggatttcatagagaagctctcagatgtgccaatggggaagctacctccacacatcgatttccagaggacacgtgtcgattgcaaggctgatgctcccattcacactgatacttttcaatactctggtgcttatgcatcgatgggagtggataatagcttgttggatagcttctcgagcaactttagagttgaggtgattcgtctcgaaaaggatgaaatggagtttgatatgattggtattgatccggctattgccaatgcgttcaggaggatcctcatagctgaggttcccacgatggctattgaaagagttcttattgcaaataatacatcagtaatccaagatgaagtcctttcccacagattgggtcttattccaatcaaggctgacccaagattgtttgaatttacagaaaataatgcggcaaatgaaaagaacaccattgtttttgggctcaaagtgaggtgtgaaaaacaaggtaaacgaaagggaccaaaacgggaggggcaagaacaagatggacaaacacgtatcacaggtatacttcctgttctttatagccaggattccctgccagaattttccaccaatccagttggtccgaccgatggagatattacaattgctagactaggccctggccaggaaattgaactggaagcacttgctgttaagggcattggcaaaacacatgcaaaatggtccccagttgcccctgcttggtataggatgcttccggaggttatcattctgaaagatattgaagatgagctggctgagaaacttgtggcaacatgcccagtcaaggtgtttgatattgaagacattggcaatggtaaaaaaagggctactgtagctagaccacgaaaatgcacactctgtagggagtgcatcagagaagggaagggatgggaggattctttgtcattacgacgtgtcaaggatcatttcatttttacaattgaatcaactggggtattaccacctgaagtgctatttactgaggctgtgaagatactgcaagacaagtgtgaacgtgctattactgatctttgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0005730 GO:0005736 GO:0030880 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0055029 GO:0061695 GO:0070013 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

RNA_pol_A_bac RNA_pol_L

Protein Analysis

376

Amino Acids

41.75

Weight (kDa)

5.13

Isoelectric Point (pI)

47.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007965)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60620 AT1G60620
fragaria_vesca	FvH4_3g42690 FvH4_3g42690
malus_domestica	MD03G1029700.v1.1 MD11G1033100.v1.1 MD11G1033500.v1.1
prunus_persica	Prupe.6G025800_v2.0.a1 Prupe.6G025800_v2.0.a1 Prupe.6G025800_v2.0.a1 Prupe.6G025800_v2.0.a1 Prupe.6G025800_v2.0.a1
pyrus_communis	pycom03g02470 pycom11g02880
rosa_chinensis	RchiOBHm_Chr5g0076331
rosa_laevigata	RLG00000036618
rosa_multiflora	Rmu_sc0002400.1_g000006
rosa_roxburghii	Rroxscaffold_1G00005480
rosa_rugosa	Rorug05G0447400
rosa_samantha	Rh5AG502300 Rh5BG524100 Rh5CG547700 Rh5DG536200
rosa_wichuraiana	Rw5G046610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	436
AccI	GTMKAC	1 cut(s)	613
AccIII	TCCGGA	1 cut(s)	808
AciI	CCGC	1 cut(s)	494
AclWI	GGATC	4 cut(s)	308, 337, 350, 1023
AcoI	YGGCCR	1 cut(s)	712
AcsI	RAATTY	2 cut(s)	476, 650
AcuI	CTGAAG	1 cut(s)	1080
AcvI	CACGTG	1 cut(s)	143
AfiI	CCNNNNNNNGG	5 cut(s)	436, 680, 715, 792, 877
AflIII	ACRYGT	4 cut(s)	140, 142, 599, 1006
AgsI	TTSAA	7 cut(s)	188, 377, 476, 725, 836, 893, 1037
AjiI	CACGTC	1 cut(s)	1007
AjnI	CCWGG	3 cut(s)	633, 709, 714
AluBI	AGCT	8 cut(s)	33, 88, 112, 228, 240, 353, 844, 929
AluI	AGCT	8 cut(s)	33, 88, 112, 228, 240, 353, 844, 929
Alw26I	GTCTC	1 cut(s)	278
AlwI	GGATC	4 cut(s)	308, 337, 350, 1023
AlwNI	CAGNNNCTG	1 cut(s)	56
Ama87I	CYCGRG	1 cut(s)	244
Aor13HI	TCCGGA	1 cut(s)	808
AoxI	GGCC	2 cut(s)	706, 712
ApoI	RAATTY	2 cut(s)	476, 650
Asp700I	GAANNNNTTC	1 cut(s)	381
AspS9I	GGNCC	4 cut(s)	563, 671, 707, 774
AsuHPI	GGTGA	1 cut(s)	277
AvaI	CYCGRG	1 cut(s)	244
AvaII	GGWCC	3 cut(s)	563, 671, 774
BalI	TGGCCA	1 cut(s)	714
BamHI	GGATCC	1 cut(s)	342
BanII	GRGCYC	1 cut(s)	528
BbrPI	CACGTG	1 cut(s)	143
BbsI	GAAGAC	1 cut(s)	900
BbvCI	CCTCAGC	1 cut(s)	354
BccI	CCATC	5 cut(s)	205, 361, 584, 674, 975
BciT130I	CCWGG	3 cut(s)	635, 711, 716
BcoDI	GTCTC	1 cut(s)	278
BfaI	CTAG	3 cut(s)	699, 704, 930
BfmI	CTRYAG	2 cut(s)	924, 952
BisI	GCNGC	1 cut(s)	495
BlsI	GCNGC	1 cut(s)	496
Bme1390I	CCNGG	3 cut(s)	635, 711, 716
Bme18I	GGWCC	3 cut(s)	563, 671, 774
BmeT110I	CYCGRG	1 cut(s)	244
BmgBI	CACGTC	1 cut(s)	1007
BmgT120I	GGNCC	4 cut(s)	563, 671, 707, 774
BmiI	GGNNCC	4 cut(s)	344, 360, 564, 776
BmrFI	CCNGG	3 cut(s)	635, 711, 716
BmrI	ACTGGG	3 cut(s)	773, 866, 1053
BmsI	GCATC	4 cut(s)	151, 215, 792, 972
BmuI	ACTGGG	3 cut(s)	773, 866, 1053
BoxI	GACNNNNGTC	1 cut(s)	143
BpiI	GAAGAC	1 cut(s)	900
BplI	GAGNNNNNCTC	2 cut(s)	74, 106
Bpu10I	CCTNAGC	1 cut(s)	354
BpuEI	CTTGAG	1 cut(s)	13
Bsa29I	ATCGAT	2 cut(s)	126, 209
BsaAI	YACGTR	2 cut(s)	143, 602
BsaJI	CCNNGG	1 cut(s)	709
BsaWI	WCCGGW	1 cut(s)	808
Bsc4I	CCNNNNNNNGG	5 cut(s)	436, 680, 715, 792, 877
Bse1I	ACTGG	7 cut(s)	9, 75, 665, 732, 779, 872, 1048
Bse3DI	GCAATG	1 cut(s)	910
BseAI	TCCGGA	1 cut(s)	808
BseBI	CCWGG	3 cut(s)	635, 711, 716
BseCI	ATCGAT	2 cut(s)	126, 209
BseDI	CCNNGG	1 cut(s)	709
BseGI	GGATG	3 cut(s)	289, 807, 986
BseLI	CCNNNNNNNGG	5 cut(s)	436, 680, 715, 792, 877
BseMI	GCAATG	1 cut(s)	910
BseMII	CTCAG	5 cut(s)	33, 105, 345, 840, 1065
BseNI	ACTGG	7 cut(s)	9, 75, 665, 732, 779, 872, 1048
Bsh1285I	CGRYCG	1 cut(s)	678
BshFI	GGCC	2 cut(s)	708, 714
BshVI	ATCGAT	2 cut(s)	126, 209
BsiEI	CGRYCG	1 cut(s)	678
BsiHKCI	CYCGRG	1 cut(s)	244
BsiSI	CCGG	2 cut(s)	317, 809
BslFI	GGGAC	2 cut(s)	576, 760
BslI	CCNNNNNNNGG	5 cut(s)	436, 680, 715, 792, 877
BsmAI	GTCTC	1 cut(s)	278
BsmBI	CGTCTC	1 cut(s)	278
BsmFI	GGGAC	2 cut(s)	576, 760
BsnI	GGCC	2 cut(s)	708, 714
BsoBI	CYCGRG	1 cut(s)	244
Bsp1286I	GDGCHC	1 cut(s)	528
Bsp13I	TCCGGA	1 cut(s)	808
Bsp143I	GATC	4 cut(s)	313, 342, 1015, 1120
BspACI	CCGC	1 cut(s)	494
BspANI	GGCC	2 cut(s)	708, 714
BspCNI	CTCAG	5 cut(s)	34, 104, 346, 841, 1066
BspDI	ATCGAT	2 cut(s)	126, 209
BspEI	TCCGGA	1 cut(s)	808
BspLI	GGNNCC	4 cut(s)	344, 360, 564, 776
BspPI	GGATC	4 cut(s)	308, 337, 350, 1023
BsrDI	GCAATG	1 cut(s)	910
BsrI	ACTGG	7 cut(s)	9, 75, 665, 732, 779, 872, 1048
BssECI	CCNNGG	1 cut(s)	709
BssMI	GATC	4 cut(s)	313, 342, 1015, 1120
BssNAI	GTATAC	1 cut(s)	614
Bst1107I	GTATAC	1 cut(s)	614
Bst2UI	CCWGG	3 cut(s)	635, 711, 716
Bst4CI	ACNGT	1 cut(s)	925
BstBAI	YACGTR	2 cut(s)	143, 602
BstC8I	GCNNGC	1 cut(s)	846
BstDEI	CTNAG	5 cut(s)	42, 91, 354, 849, 1074
BstF5I	GGATG	3 cut(s)	289, 807, 986
BstKTI	GATC	4 cut(s)	316, 345, 1018, 1123
BstMAI	GTCTC	1 cut(s)	278
BstMBI	GATC	4 cut(s)	313, 342, 1015, 1120
BstMCI	CGRYCG	1 cut(s)	678
BstMWI	GCNNNNNNNGC	2 cut(s)	246, 926
BstNI	CCWGG	3 cut(s)	635, 711, 716
BstNSI	RCATGY	2 cut(s)	767, 870
BstPAI	GACNNNNGTC	1 cut(s)	143
BstSCI	CCNGG	3 cut(s)	633, 709, 714
BstSFI	CTRYAG	2 cut(s)	924, 952
BstV2I	GAAGAC	1 cut(s)	900
BstX2I	RGATCY	1 cut(s)	342
BstYI	RGATCY	1 cut(s)	342
BstZ17I	GTATAC	1 cut(s)	614
Bsu15I	ATCGAT	2 cut(s)	126, 209
BsuRI	GGCC	2 cut(s)	708, 714
BsuTUI	ATCGAT	2 cut(s)	126, 209
BtrI	CACGTC	1 cut(s)	1007
BtsCI	GGATG	3 cut(s)	289, 807, 986
BtsIMutI	CAGTG	2 cut(s)	68, 174
Cac8I	GCNNGC	1 cut(s)	846
CaiI	CAGNNNCTG	1 cut(s)	56
Cfr13I	GGNCC	4 cut(s)	563, 671, 707, 774
ClaI	ATCGAT	2 cut(s)	126, 209
CviAII	CATG	2 cut(s)	764, 867
DdeI	CTNAG	5 cut(s)	42, 91, 354, 849, 1074
DpnI	GATC	4 cut(s)	315, 344, 1017, 1122
DpnII	GATC	4 cut(s)	313, 342, 1015, 1120
EaeI	YGGCCR	1 cut(s)	712
Eco24I	GRGCYC	1 cut(s)	528
Eco47I	GGWCC	3 cut(s)	563, 671, 774
Eco57I	CTGAAG	1 cut(s)	1080
Eco72I	CACGTG	1 cut(s)	143
Eco88I	CYCGRG	1 cut(s)	244
EcoO109I	RGGNCCY	1 cut(s)	707
EcoRII	CCWGG	3 cut(s)	633, 709, 714
EcoT22I	ATGCAT	1 cut(s)	208
EcoT38I	GRGCYC	1 cut(s)	528
Esp3I	CGTCTC	1 cut(s)	278
FaeI	CATG	2 cut(s)	767, 870
FaiI	YATR	9 cut(s)	80, 204, 302, 350, 614, 630, 765, 798, 868
FaqI	GGGAC	2 cut(s)	576, 760
FatI	CATG	2 cut(s)	763, 866
FblI	GTMKAC	1 cut(s)	613
Fnu4HI	GCNGC	1 cut(s)	495
FokI	GGATG	3 cut(s)	296, 814, 993
FriOI	GRGCYC	1 cut(s)	528
Fsp4HI	GCNGC	1 cut(s)	495
FspBI	CTAG	3 cut(s)	699, 704, 930
GluI	GCNGC	1 cut(s)	495
HaeIII	GGCC	2 cut(s)	708, 714
HapII	CCGG	2 cut(s)	317, 809
Hin1II	CATG	2 cut(s)	767, 870
HinfI	GANTC	5 cut(s)	53, 268, 638, 989, 1037
HpaII	CCGG	2 cut(s)	317, 809
HphI	GGTGA	1 cut(s)	277
Hpy166II	GTNNAC	3 cut(s)	554, 614, 1106
Hpy188I	TCNGA	6 cut(s)	43, 52, 94, 675, 825, 968
Hpy188III	TCNNGA	6 cut(s)	57, 133, 244, 275, 337, 809
Hpy8I	GTNNAC	3 cut(s)	554, 614, 1106
Hpy99I	CGWCG	1 cut(s)	1008
HpyAV	CCTTC	2 cut(s)	965, 970
HpyCH4III	ACNGT	1 cut(s)	925
HpyCH4IV	ACGT	4 cut(s)	142, 601, 1006, 1108
HpyCH4V	TGCA	7 cut(s)	153, 206, 392, 767, 945, 963, 1093
HpyF10VI	GCNNNNNNNGC	2 cut(s)	246, 926
HpyF3I	CTNAG	5 cut(s)	42, 91, 354, 849, 1074
HpySE526I	ACGT	4 cut(s)	142, 601, 1006, 1108
Hsp92II	CATG	2 cut(s)	767, 870
Kpn2I	TCCGGA	1 cut(s)	808
Kzo9I	GATC	4 cut(s)	313, 342, 1015, 1120
LmnI	GCTCC	1 cut(s)	169
LweI	GCATC	4 cut(s)	151, 215, 792, 972
MaeI	CTAG	3 cut(s)	699, 704, 930
MaeII	ACGT	4 cut(s)	142, 601, 1006, 1108
MaeIII	GTNAC	1 cut(s)	11
MalI	GATC	4 cut(s)	315, 344, 1017, 1122
MboI	GATC	4 cut(s)	313, 342, 1015, 1120
MboII	GAAGA	3 cut(s)	848, 905, 1096
MfeI	CAATTG	2 cut(s)	693, 1032
MflI	RGATCY	1 cut(s)	342
MhlI	GDGCHC	1 cut(s)	528
MlsI	TGGCCA	1 cut(s)	714
MluCI	AATT	5 cut(s)	476, 650, 693, 720, 1032
MluNI	TGGCCA	1 cut(s)	714
MmeI	TCCRAC	2 cut(s)	213, 698
Mox20I	TGGCCA	1 cut(s)	714
Mph1103I	ATGCAT	1 cut(s)	208
MroI	TCCGGA	1 cut(s)	808
MroXI	GAANNNNTTC	1 cut(s)	381
MscI	TGGCCA	1 cut(s)	714
MseI	TTAA	1 cut(s)	744
MslI	CAYNNNNRTG	1 cut(s)	940
Msp20I	TGGCCA	1 cut(s)	714
MspI	CCGG	2 cut(s)	317, 809
MspR9I	CCNGG	3 cut(s)	635, 711, 716
MunI	CAATTG	2 cut(s)	693, 1032
MvaI	CCWGG	3 cut(s)	635, 711, 716
MwoI	GCNNNNNNNGC	2 cut(s)	246, 926
NdeII	GATC	4 cut(s)	313, 342, 1015, 1120
NlaIII	CATG	2 cut(s)	767, 870
NlaIV	GGNNCC	4 cut(s)	344, 360, 564, 776
NsiI	ATGCAT	1 cut(s)	208
NspI	RCATGY	2 cut(s)	767, 870
PaeR7I	CTCGAG	1 cut(s)	244
PdmI	GAANNNNTTC	1 cut(s)	381
PfeI	GAWTC	5 cut(s)	53, 268, 638, 989, 1037
PflMI	CCANNNNNTGG	1 cut(s)	436
PkrI	GCNGC	1 cut(s)	496
PmaCI	CACGTG	1 cut(s)	143
PmlI	CACGTG	1 cut(s)	143
Ppu21I	YACGTR	2 cut(s)	143, 602
PshAI	GACNNNNGTC	1 cut(s)	143
Psp6I	CCWGG	3 cut(s)	633, 709, 714
PspCI	CACGTG	1 cut(s)	143
PspGI	CCWGG	3 cut(s)	633, 709, 714
PspN4I	GGNNCC	4 cut(s)	344, 360, 564, 776
PspPI	GGNCC	4 cut(s)	563, 671, 707, 774
PstNI	CAGNNNCTG	1 cut(s)	56
PsuI	RGATCY	1 cut(s)	342
RseI	CAYNNNNRTG	1 cut(s)	940
SaqAI	TTAA	1 cut(s)	744
SatI	GCNGC	1 cut(s)	495
Sau3AI	GATC	4 cut(s)	313, 342, 1015, 1120
Sau96I	GGNCC	4 cut(s)	563, 671, 707, 774
ScrFI	CCNGG	3 cut(s)	635, 711, 716
SduI	GDGCHC	1 cut(s)	528
SfaNI	GCATC	4 cut(s)	151, 215, 792, 972
SfcI	CTRYAG	2 cut(s)	924, 952
Sfr274I	CTCGAG	1 cut(s)	244
SinI	GGWCC	3 cut(s)	563, 671, 774
SlaI	CTCGAG	1 cut(s)	244
SmiMI	CAYNNNNRTG	1 cut(s)	940
SmlI	CTYRAG	2 cut(s)	28, 244
SmoI	CTYRAG	2 cut(s)	28, 244
Sse9I	AATT	5 cut(s)	476, 650, 693, 720, 1032
SsiI	CCGC	1 cut(s)	494
SspMI	CTAG	3 cut(s)	699, 704, 930
StyD4I	CCNGG	3 cut(s)	633, 709, 714
TaaI	ACNGT	1 cut(s)	925
TaiI	ACGT	4 cut(s)	145, 604, 1009, 1111
TaqI	TCGA	5 cut(s)	126, 147, 209, 245, 276
TaqII	GACCGA	1 cut(s)	692
TasI	AATT	5 cut(s)	476, 650, 693, 720, 1032
TauI	GCSGC	1 cut(s)	497
TfiI	GAWTC	5 cut(s)	53, 268, 638, 989, 1037
Tru1I	TTAA	1 cut(s)	744
Tru9I	TTAA	1 cut(s)	744
TscAI	CASTG	2 cut(s)	75, 181
TspDTI	ATGAA	5 cut(s)	67, 300, 432, 516, 1012
TspRI	CASTG	2 cut(s)	75, 181
Van91I	CCANNNNNTGG	1 cut(s)	436
VpaK11BI	GGWCC	3 cut(s)	563, 671, 774
XapI	RAATTY	2 cut(s)	476, 650
XceI	RCATGY	2 cut(s)	767, 870
XhoI	CTCGAG	1 cut(s)	244
XmiI	GTMKAC	1 cut(s)	613
XmnI	GAANNNNTTC	1 cut(s)	381
XspI	CTAG	3 cut(s)	699, 704, 930
Zsp2I	ATGCAT	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.