Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0007965

Physical Location & Seq

Genomic Coordinates Reverse (-)

1854266 .. 1858052

Gene Structure 3787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g02470.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGTCGTCCGATACCGAAGATACGACGTCGGGTTCGGAGTCTGAAGCATCGAACTCTGCGAAGGGCAACTCCACGCTGGAATTCATAGAGAAGCTCTCAGATGTGCCAATGGGGCGGCTGCCCCCGAACATTGAATTCCAGAGGACACGTGTCGAGTGCAAGGCCGATGCTCCCATTCATACTGATACTTTTCAGTATAATGGTGCTTATGCATCAATGGGAGTCGATAATAACTTAGTGGATAGCTTCTGTGACAACTTTAAAGTTGAAGTTATTAATCTTACGGAGGATGAGATGGAGTTTGATATGATCGGCATCGATCCAGCACTTGCCAATGCATTCCGGAGAATCCTTATAGCTGAGGTTCCCACAATGGCTATTGAAAAAGTTCTTATTGCAAACAATACATCAGTAATCCAAGATGAAGTACTTGCTCACAGGTTGGGTCTCATTTCGATCAAGGTTGACCCTAGATTATTTGAATTTACAGAAAATAATACACCAAATGAAAAGAACACCATCGTTTTTAAGCTCCATGTTCGCTGTGAACGAGGGGGGCAGCGTATTTCAGTAAAGTCAAAAGAATTGATTTGGTTGCCAAATGGGAGTGAGTATCCTTTGGAATCGCAAGATACCAAGTCAGAGTCATCCTCAAAACCAAAAACATATACATCATTTACTTGCAGTCAGGATTCCTTGCCAGAATTTTCCAACAATCCAATTTGCCCCACGAGTGGAGACATTACAATTGCTAGACTAGGCCCTGGTCAGGAAATTGATCTGGAAGCACATGCTGTTAAGGGCATTGGTAAAACACATGCTAAATGGTCTCCAGTTGCCCCTGTTTGGTATAGGATGCTTCCTGAGGTTATAATATCGCAAGATATTGAAGATGAGATGGCTGAGAAACTTGTGGCAACATGCCCAGTTAAAGTATTTGATATTGAAGATATTGGCAACGGTAAAAAAAGGGCTACTGTAGCCAGACCGCGAGCTTGCACACTGTGCAGGGAGTGCATCAGAGAAGGGAAGGGTTGGGAGAATTCTATTGCTCTGCAGCGTAAGAAGGATCATTTCATTTTCAAAATTGAATCAACCGGTGTATTACCTCCTGAAGTGCTATTTACTGAAGCTGTGAAGATTTTGGAAGACAAGTGCGATCGTGTTATTTCTGATCTTTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0005730 GO:0005736 GO:0030880 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0055029 GO:0061695 GO:0070013 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

RNA_pol_A_bac RNA_pol_L

Protein Analysis

395

Amino Acids

43.85

Weight (kDa)

4.96

Isoelectric Point (pI)

43.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007965)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60620 AT1G60620
fragaria_vesca	FvH4_3g42690 FvH4_3g42690
malus_domestica	MD03G1029700.v1.1 MD11G1033100.v1.1 MD11G1033500.v1.1
prunus_persica	Prupe.6G025800_v2.0.a1 Prupe.6G025800_v2.0.a1 Prupe.6G025800_v2.0.a1 Prupe.6G025800_v2.0.a1 Prupe.6G025800_v2.0.a1
pyrus_communis	pycom03g02470 pycom11g02880
rosa_chinensis	RchiOBHm_Chr5g0076331
rosa_laevigata	RLG00000036618
rosa_multiflora	Rmu_sc0002400.1_g000006
rosa_roxburghii	Rroxscaffold_1G00005480
rosa_rugosa	Rorug05G0447400
rosa_samantha	Rh5AG502300 Rh5BG524100 Rh5CG547700 Rh5DG536200
rosa_wichuraiana	Rw5G046610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	872
AatII	GACGTC	1 cut(s)	29
AccII	CGCG	1 cut(s)	991
AccIII	TCCGGA	1 cut(s)	342
AciI	CCGC	2 cut(s)	115, 989
AclWI	GGATC	2 cut(s)	314, 1077
AcsI	RAATTY	5 cut(s)	80, 134, 482, 704, 1042
AcuI	CTGAAG	3 cut(s)	63, 1134, 1149
AcvI	CACGTG	1 cut(s)	149
AcyI	GRCGYC	1 cut(s)	26
AdeI	CACNNNGTG	1 cut(s)	1005
AfaI	GTAC	1 cut(s)	429
AfiI	CCNNNNNNNGG	3 cut(s)	734, 769, 846
AflIII	ACRYGT	2 cut(s)	146, 148
AgeI	ACCGGT	1 cut(s)	1097
AgsI	TTSAA	8 cut(s)	134, 269, 383, 482, 890, 947, 1084, 1091
AjnI	CCWGG	1 cut(s)	763
AluBI	AGCT	6 cut(s)	94, 246, 359, 532, 995, 1133
AluI	AGCT	6 cut(s)	94, 246, 359, 532, 995, 1133
Alw26I	GTCTC	3 cut(s)	452, 732, 834
AlwI	GGATC	2 cut(s)	314, 1077
Aor13HI	TCCGGA	1 cut(s)	342
AoxI	GGCC	2 cut(s)	162, 760
ApeKI	GCWGC	3 cut(s)	118, 559, 1057
ApoI	RAATTY	5 cut(s)	80, 134, 482, 704, 1042
ArsI	GACNNNNNNTTYG	2 cut(s)	16, 48
AseI	ATTAAT	1 cut(s)	276
AsiGI	ACCGGT	1 cut(s)	1097
Asp700I	GAANNNNTTC	1 cut(s)	387
AspS9I	GGNCC	1 cut(s)	761
AxyI	CCTNAGG	1 cut(s)	864
BauI	CACGAG	1 cut(s)	730
BbrPI	CACGTG	1 cut(s)	149
BbsI	GAAGAC	1 cut(s)	1155
BbvCI	CCTCAGC	1 cut(s)	360
BbvI	GCAGC	3 cut(s)	105, 571, 1069
BccI	CCATC	3 cut(s)	289, 527, 892
BciT130I	CCWGG	1 cut(s)	765
BciVI	GTATCC	1 cut(s)	624
BcoDI	GTCTC	3 cut(s)	452, 732, 834
BfaI	CTAG	3 cut(s)	471, 753, 758
BfmI	CTRYAG	2 cut(s)	978, 1055
BfuI	GTATCC	1 cut(s)	624
BglI	GCCNNNNNGGC	1 cut(s)	112
BisI	GCNGC	4 cut(s)	116, 119, 560, 1058
BlsI	GCNGC	4 cut(s)	117, 120, 561, 1059
BmcAI	AGTACT	1 cut(s)	429
Bme1390I	CCNGG	1 cut(s)	765
BmgT120I	GGNCC	1 cut(s)	761
BmiI	GGNNCC	1 cut(s)	366
BmrFI	CCNGG	1 cut(s)	765
BmrI	ACTGGG	1 cut(s)	920
BmsI	GCATC	6 cut(s)	56, 157, 221, 324, 846, 1026
BmuI	ACTGGG	1 cut(s)	920
BoxI	GACNNNNGTC	1 cut(s)	149
BpiI	GAAGAC	1 cut(s)	1155
BplI	GAGNNNNNCTC	4 cut(s)	80, 112, 635, 667
BpmI	CTGGAG	1 cut(s)	816
Bpu10I	CCTNAGC	1 cut(s)	360
Bsa29I	ATCGAT	1 cut(s)	318
BsaAI	YACGTR	1 cut(s)	149
BsaBI	GATNNNNATC	1 cut(s)	314
BsaHI	GRCGYC	1 cut(s)	26
BsaI	GGTCTC	2 cut(s)	452, 834
BsaJI	CCNNGG	1 cut(s)	763
BsaWI	WCCGGW	2 cut(s)	342, 1097
Bsc4I	CCNNNNNNNGG	3 cut(s)	734, 769, 846
Bse118I	RCCGGY	1 cut(s)	1097
Bse1I	ACTGG	2 cut(s)	833, 926
Bse21I	CCTNAGG	1 cut(s)	864
Bse8I	GATNNNNATC	1 cut(s)	314
BseAI	TCCGGA	1 cut(s)	342
BseBI	CCWGG	1 cut(s)	765
BseCI	ATCGAT	1 cut(s)	318
BseDI	CCNNGG	1 cut(s)	763
BseGI	GGATG	3 cut(s)	295, 647, 861
BseJI	GATNNNNATC	1 cut(s)	314
BseLI	CCNNNNNNNGG	3 cut(s)	734, 769, 846
BseMII	CTCAG	4 cut(s)	111, 351, 855, 894
BseNI	ACTGG	2 cut(s)	833, 926
BseXI	GCAGC	3 cut(s)	105, 571, 1069
BsgI	GTGCAG	1 cut(s)	1027
Bsh1236I	CGCG	1 cut(s)	991
Bsh1285I	CGRYCG	1 cut(s)	1162
BshFI	GGCC	2 cut(s)	164, 762
BshTI	ACCGGT	1 cut(s)	1097
BshVI	ATCGAT	1 cut(s)	318
BsiEI	CGRYCG	1 cut(s)	1162
BsiSI	CCGG	2 cut(s)	343, 1098
BslI	CCNNNNNNNGG	3 cut(s)	734, 769, 846
BsmAI	GTCTC	3 cut(s)	452, 732, 834
BsmI	GAATGC	1 cut(s)	338
BsnI	GGCC	2 cut(s)	164, 762
Bso31I	GGTCTC	2 cut(s)	452, 834
Bsp13I	TCCGGA	1 cut(s)	342
Bsp143I	GATC	7 cut(s)	309, 319, 456, 778, 1069, 1159, 1174
BspACI	CCGC	2 cut(s)	115, 989
BspANI	GGCC	2 cut(s)	164, 762
BspCNI	CTCAG	4 cut(s)	110, 352, 856, 895
BspDI	ATCGAT	1 cut(s)	318
BspEI	TCCGGA	1 cut(s)	342
BspFNI	CGCG	1 cut(s)	991
BspLI	GGNNCC	1 cut(s)	366
BspMAI	CTGCAG	1 cut(s)	1059
BspPI	GGATC	2 cut(s)	314, 1077
BspTNI	GGTCTC	2 cut(s)	452, 834
BsrFI	RCCGGY	1 cut(s)	1097
BsrI	ACTGG	2 cut(s)	833, 926
BssAI	RCCGGY	1 cut(s)	1097
BssECI	CCNNGG	1 cut(s)	763
BssMI	GATC	7 cut(s)	309, 319, 456, 778, 1069, 1159, 1174
BssNI	GRCGYC	1 cut(s)	26
BssSI	CACGAG	1 cut(s)	730
Bst2BI	CACGAG	1 cut(s)	730
Bst2UI	CCWGG	1 cut(s)	765
Bst4CI	ACNGT	3 cut(s)	962, 979, 1005
BstACI	GRCGYC	1 cut(s)	26
BstAPI	GCANNNNNTGC	2 cut(s)	1005, 1014
BstBAI	YACGTR	1 cut(s)	149
BstC8I	GCNNGC	2 cut(s)	993, 997
BstDEI	CTNAG	5 cut(s)	97, 235, 360, 864, 903
BstF5I	GGATG	3 cut(s)	295, 647, 861
BstFNI	CGCG	1 cut(s)	991
BstKTI	GATC	7 cut(s)	312, 322, 459, 781, 1072, 1162, 1177
BstMAI	GTCTC	3 cut(s)	452, 732, 834
BstMBI	GATC	7 cut(s)	309, 319, 456, 778, 1069, 1159, 1174
BstMCI	CGRYCG	1 cut(s)	1162
BstMWI	GCNNNNNNNGC	4 cut(s)	112, 980, 1005, 1014
BstNI	CCWGG	1 cut(s)	765
BstNSI	RCATGY	3 cut(s)	794, 821, 924
BstPAI	GACNNNNGTC	1 cut(s)	149
BstSCI	CCNGG	1 cut(s)	763
BstSFI	CTRYAG	2 cut(s)	978, 1055
BstUI	CGCG	1 cut(s)	991
BstV1I	GCAGC	3 cut(s)	105, 571, 1069
BstV2I	GAAGAC	1 cut(s)	1155
Bsu15I	ATCGAT	1 cut(s)	318
Bsu36I	CCTNAGG	1 cut(s)	864
BsuI	GTATCC	1 cut(s)	624
BsuRI	GGCC	2 cut(s)	164, 762
BsuTUI	ATCGAT	1 cut(s)	318
BtsCI	GGATG	3 cut(s)	295, 647, 861
BtsIMutI	CAGTG	1 cut(s)	1001
Cac8I	GCNNGC	2 cut(s)	993, 997
Cfr10I	RCCGGY	1 cut(s)	1097
Cfr13I	GGNCC	1 cut(s)	761
ClaI	ATCGAT	1 cut(s)	318
Csp6I	GTAC	1 cut(s)	428
CspAI	ACCGGT	1 cut(s)	1097
CviAII	CATG	4 cut(s)	536, 791, 818, 921
CviQI	GTAC	1 cut(s)	428
DdeI	CTNAG	5 cut(s)	97, 235, 360, 864, 903
DpnI	GATC	7 cut(s)	311, 321, 458, 780, 1071, 1161, 1176
DpnII	GATC	7 cut(s)	309, 319, 456, 778, 1069, 1159, 1174
DraI	TTTAAA	1 cut(s)	262
DraIII	CACNNNGTG	1 cut(s)	1005
Eco31I	GGTCTC	2 cut(s)	452, 834
Eco57I	CTGAAG	3 cut(s)	63, 1134, 1149
Eco72I	CACGTG	1 cut(s)	149
Eco81I	CCTNAGG	1 cut(s)	864
EcoO109I	RGGNCCY	1 cut(s)	761
EcoRI	GAATTC	3 cut(s)	80, 134, 1042
EcoRII	CCWGG	1 cut(s)	763
EcoT22I	ATGCAT	2 cut(s)	214, 340
FaeI	CATG	4 cut(s)	539, 794, 821, 924
FatI	CATG	4 cut(s)	535, 790, 817, 920
Fnu4HI	GCNGC	4 cut(s)	116, 119, 560, 1058
FokI	GGATG	3 cut(s)	302, 634, 868
Fsp4HI	GCNGC	4 cut(s)	116, 119, 560, 1058
FspBI	CTAG	3 cut(s)	471, 753, 758
GluI	GCNGC	4 cut(s)	116, 119, 560, 1058
GsuI	CTGGAG	1 cut(s)	816
HaeIII	GGCC	2 cut(s)	164, 762
HapII	CCGG	2 cut(s)	343, 1098
Hin1I	GRCGYC	1 cut(s)	26
Hin1II	CATG	4 cut(s)	539, 794, 821, 924
HincII	GTYRAC	1 cut(s)	466
HindII	GTYRAC	1 cut(s)	466
HinfI	GANTC	7 cut(s)	38, 222, 348, 623, 644, 692, 1091
HpaII	CCGG	2 cut(s)	343, 1098
Hpy166II	GTNNAC	2 cut(s)	466, 548
Hpy188I	TCNGA	7 cut(s)	10, 37, 43, 100, 643, 1022, 1174
Hpy188III	TCNNGA	8 cut(s)	139, 343, 689, 770, 782, 863, 1112, 1182
Hpy8I	GTNNAC	2 cut(s)	466, 548
Hpy99I	CGWCG	2 cut(s)	28, 31
HpyAV	CCTTC	4 cut(s)	55, 1019, 1024, 1060
HpyCH4III	ACNGT	3 cut(s)	962, 979, 1005
HpyCH4IV	ACGT	2 cut(s)	26, 148
HpyCH4V	TGCA	9 cut(s)	159, 212, 338, 398, 684, 999, 1008, 1017, 1057
HpyF10VI	GCNNNNNNNGC	4 cut(s)	112, 980, 1005, 1014
HpyF3I	CTNAG	5 cut(s)	97, 235, 360, 864, 903
HpySE526I	ACGT	2 cut(s)	26, 148
Hsp92I	GRCGYC	1 cut(s)	26
Hsp92II	CATG	4 cut(s)	539, 794, 821, 924
Kpn2I	TCCGGA	1 cut(s)	342
Kzo9I	GATC	7 cut(s)	309, 319, 456, 778, 1069, 1159, 1174
LmnI	GCTCC	2 cut(s)	175, 537
Lsp1109I	GCAGC	3 cut(s)	105, 571, 1069
LweI	GCATC	6 cut(s)	56, 157, 221, 324, 846, 1026
MaeI	CTAG	3 cut(s)	471, 753, 758
MaeII	ACGT	2 cut(s)	26, 148
MaeIII	GTNAC	1 cut(s)	251
MalI	GATC	7 cut(s)	311, 321, 458, 780, 1071, 1161, 1176
MboI	GATC	7 cut(s)	309, 319, 456, 778, 1069, 1159, 1174
MboII	GAAGA	5 cut(s)	29, 902, 959, 1150, 1160
MfeI	CAATTG	1 cut(s)	747
MlyI	GAGTC	3 cut(s)	47, 231, 653
MmeI	TCCRAC	1 cut(s)	735
MnlI	CCTC	7 cut(s)	135, 280, 355, 545, 661, 859, 1119
Mph1103I	ATGCAT	2 cut(s)	214, 340
MroI	TCCGGA	1 cut(s)	342
MroXI	GAANNNNTTC	1 cut(s)	387
MseI	TTAA	5 cut(s)	261, 276, 528, 798, 930
MspI	CCGG	2 cut(s)	343, 1098
MspR9I	CCNGG	1 cut(s)	765
MunI	CAATTG	1 cut(s)	747
Mva1269I	GAATGC	1 cut(s)	338
MvaI	CCWGG	1 cut(s)	765
MvnI	CGCG	1 cut(s)	991
MwoI	GCNNNNNNNGC	4 cut(s)	112, 980, 1005, 1014
NdeII	GATC	7 cut(s)	309, 319, 456, 778, 1069, 1159, 1174
NlaIII	CATG	4 cut(s)	539, 794, 821, 924
NlaIV	GGNNCC	1 cut(s)	366
NmuCI	GTSAC	1 cut(s)	251
NsiI	ATGCAT	2 cut(s)	214, 340
NspI	RCATGY	3 cut(s)	794, 821, 924
PcsI	WCGNNNNNNNCGW	2 cut(s)	56, 547
PctI	GAATGC	1 cut(s)	338
PdmI	GAANNNNTTC	1 cut(s)	387
PfeI	GAWTC	4 cut(s)	348, 623, 692, 1091
PinAI	ACCGGT	1 cut(s)	1097
PkrI	GCNGC	4 cut(s)	117, 120, 561, 1059
Ple19I	CGATCG	1 cut(s)	1162
PleI	GAGTC	3 cut(s)	46, 230, 652
PmaCI	CACGTG	1 cut(s)	149
PmlI	CACGTG	1 cut(s)	149
PpsI	GAGTC	3 cut(s)	46, 230, 652
Ppu21I	YACGTR	1 cut(s)	149
PshAI	GACNNNNGTC	1 cut(s)	149
PshBI	ATTAAT	1 cut(s)	276
PsiI	TTATAA	1 cut(s)	872
Psp6I	CCWGG	1 cut(s)	763
PspCI	CACGTG	1 cut(s)	149
PspGI	CCWGG	1 cut(s)	763
PspN4I	GGNNCC	1 cut(s)	366
PspPI	GGNCC	1 cut(s)	761
PstI	CTGCAG	1 cut(s)	1059
PvuI	CGATCG	1 cut(s)	1162
RsaI	GTAC	1 cut(s)	429
RsaNI	GTAC	1 cut(s)	428
SaqAI	TTAA	5 cut(s)	261, 276, 528, 798, 930
SatI	GCNGC	4 cut(s)	116, 119, 560, 1058
Sau3AI	GATC	7 cut(s)	309, 319, 456, 778, 1069, 1159, 1174
Sau96I	GGNCC	1 cut(s)	761
ScaI	AGTACT	1 cut(s)	429
SchI	GAGTC	3 cut(s)	47, 231, 653
ScrFI	CCNGG	1 cut(s)	765
SfaNI	GCATC	6 cut(s)	56, 157, 221, 324, 846, 1026
SfcI	CTRYAG	2 cut(s)	978, 1055
SsiI	CCGC	2 cut(s)	115, 989
SspMI	CTAG	3 cut(s)	471, 753, 758
StyD4I	CCNGG	1 cut(s)	763
TaaI	ACNGT	3 cut(s)	962, 979, 1005
TaiI	ACGT	2 cut(s)	29, 151
TaqI	TCGA	5 cut(s)	50, 153, 225, 318, 455
TatI	WGTACW	1 cut(s)	427
TauI	GCSGC	1 cut(s)	118
TfiI	GAWTC	4 cut(s)	348, 623, 692, 1091
Tru1I	TTAA	5 cut(s)	261, 276, 528, 798, 930
Tru9I	TTAA	5 cut(s)	261, 276, 528, 798, 930
TscAI	CASTG	1 cut(s)	1008
TseFI	GTSAC	1 cut(s)	251
TseI	GCWGC	3 cut(s)	118, 559, 1057
Tsp45I	GTSAC	1 cut(s)	251
TspDTI	ATGAA	5 cut(s)	73, 167, 438, 522, 1066
TspGWI	ACGGA	1 cut(s)	299
TspRI	CASTG	1 cut(s)	1008
VspI	ATTAAT	1 cut(s)	276
XapI	RAATTY	5 cut(s)	80, 134, 482, 704, 1042
XceI	RCATGY	3 cut(s)	794, 821, 924
XmnI	GAANNNNTTC	1 cut(s)	387
XspI	CTAG	3 cut(s)	471, 753, 758
ZraI	GACGTC	1 cut(s)	27
ZrmI	AGTACT	1 cut(s)	429
Zsp2I	ATGCAT	2 cut(s)	214, 340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.