Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0007965

Physical Location & Seq

Genomic Coordinates Reverse (-)

2045776 .. 2050416

Gene Structure 4641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G025800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGTCGTCCGATAACGAAGATACAACGTCGAGTTCAGAGTCTGAAGGAGCAGACTCTGTAAAAGAGAACGCTACATTGGAATTTATAGAGAATCTCTCAGATGTGCCGATGGGGCGACTACCTTCAAACATTGAATTCCAGAGGACGCGCGTCGATTGCAAGGCTGATGCTCCCATTCATACTGATACCTTTCAGTATTCTGGTGCTTATTCATCAATGAGAGTTGAAAATAGTTTTTTGGATAACTTCTGTGACAACTTTAGAGTTGAAGTTATTCGTCTTACAGAGGATGAAATGGAGTTTGATATGATCGGCATTGATCCAGCACTTGCCAATGCATTCCGGAGAATCCTCATATCTGAGGTTCCCACAATGGCTATTGAAAAAGTCCTTATTGCAAACAACACATCAGTAATCCAAGATGAAGTACTTGCCCACAGGTTGGGTCTCATTCCGATCAAAGCCGACCCTAGATTATTTGAATATGCAGAAAATAATACGGCAAGTGAAAAGAACACCATTGTTTTTAAGCTCCATGTTTGCTGTGAACGAAGTGGGCAACGTCTTTCAGTAAAGTCAAAAGAATTGATATGGTTGCCAAATGGGAGTGAGTTTCCTTTGGAATCACAAGATTCAAAGACAGGTTCATCCTCAAAACCAAAAACATATACATCATTTACTTGCAGCCAGGATTCCTTGCCAGAATTTTCCAGCAATCCAATCGCCCCCGCGCTTGGAGATATTCTTATTGCTAGACTGGGCCCTGGTCAGGAAATTGAACTGGAAGCACATGCTGTTAAGGGCATTGGTAAAACACATTCAAAATGGTCCCCAGTTACCCCTGTTTGGTATAAGATGCTTCCTGAGATTGTACTATTGGAAGATATTGAAGATCAGCAGGCTGAGAAACTTGTGGCAATATGCCCAGTTAAAGTATTTGATATTGAAGATATTGGCAAAGCAGGTAAAAAGAGGGCTACTGTAGCCAGACCACGAGCTTGCACATTGTGCAGGGAATGCATCAGAGAAGGGAAGGGATGGGAGAATGCAATATCGTTACAGCGTAAGAAGGATCATTTCATTTTTACTATTGAATCAAGTGGGGTATTTCCTCCCGAAGTGTTAGTTACTGAAGCTGTGAAGATATTGGAAGAGAAGTGCGATCGTGTTATTTCCGATCTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0005730 GO:0005736 GO:0030880 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0055029 GO:0061695 GO:0070013 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

RNA_pol_A_bac RNA_pol_L

Protein Analysis

396

Amino Acids

44.01

Weight (kDa)

4.93

Isoelectric Point (pI)

51.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007965)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60620 AT1G60620
fragaria_vesca	FvH4_3g42690 FvH4_3g42690
malus_domestica	MD03G1029700.v1.1 MD11G1033100.v1.1 MD11G1033500.v1.1
prunus_persica	Prupe.6G025800_v2.0.a1 Prupe.6G025800_v2.0.a1 Prupe.6G025800_v2.0.a1 Prupe.6G025800_v2.0.a1 Prupe.6G025800_v2.0.a1
pyrus_communis	pycom03g02470 pycom11g02880
rosa_chinensis	RchiOBHm_Chr5g0076331
rosa_laevigata	RLG00000036618
rosa_multiflora	Rmu_sc0002400.1_g000006
rosa_roxburghii	Rroxscaffold_1G00005480
rosa_rugosa	Rorug05G0447400
rosa_samantha	Rh5AG502300 Rh5BG524100 Rh5CG547700 Rh5DG536200
rosa_wichuraiana	Rw5G046610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	953
AccB7I	CCANNNNNTGG	1 cut(s)	442
AccII	CGCG	3 cut(s)	148, 150, 731
AccIII	TCCGGA	1 cut(s)	342
AciI	CCGC	1 cut(s)	729
AclWI	GGATC	2 cut(s)	314, 1080
AcsI	RAATTY	3 cut(s)	80, 134, 704
AcuI	CTGAAG	2 cut(s)	63, 1152
AdeI	CACNNNGTG	1 cut(s)	1008
AfaI	GTAC	2 cut(s)	429, 873
AfiI	CCNNNNNNNGG	4 cut(s)	442, 734, 769, 846
AjnI	CCWGG	2 cut(s)	687, 763
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AluBI	AGCT	3 cut(s)	532, 998, 1136
AluI	AGCT	3 cut(s)	532, 998, 1136
Alw26I	GTCTC	1 cut(s)	452
AlwI	GGATC	2 cut(s)	314, 1080
AlwNI	CAGNNNCTG	2 cut(s)	41, 56
Aor13HI	TCCGGA	1 cut(s)	342
AoxI	GGCC	1 cut(s)	760
ApaI	GGGCCC	1 cut(s)	764
ApeKI	GCWGC	1 cut(s)	684
ApoI	RAATTY	3 cut(s)	80, 134, 704
Asp700I	GAANNNNTTC	1 cut(s)	273
AspLEI	GCGC	2 cut(s)	150, 733
AspS9I	GGNCC	3 cut(s)	760, 761, 828
AvaII	GGWCC	1 cut(s)	828
BaeGI	GKGCMC	1 cut(s)	764
BanII	GRGCYC	1 cut(s)	764
BauI	CACGAG	1 cut(s)	993
BbvI	GCAGC	1 cut(s)	696
BccI	CCATC	2 cut(s)	103, 1032
BceAI	ACGGC	1 cut(s)	516
BcgI	CGANNNNNNTGC	2 cut(s)	703, 737
BciT130I	CCWGG	2 cut(s)	689, 765
BcoDI	GTCTC	1 cut(s)	452
BfaI	CTAG	2 cut(s)	471, 753
BfmI	CTRYAG	1 cut(s)	981
BfuAI	ACCTGC	1 cut(s)	953
BglI	GCCNNNNNGGC	1 cut(s)	112
BisI	GCNGC	1 cut(s)	685
BlsI	GCNGC	1 cut(s)	686
BmcAI	AGTACT	1 cut(s)	429
Bme1390I	CCNGG	2 cut(s)	689, 765
Bme18I	GGWCC	1 cut(s)	828
BmgT120I	GGNCC	3 cut(s)	760, 761, 828
BmiI	GGNNCC	3 cut(s)	366, 762, 830
BmrFI	CCNGG	2 cut(s)	689, 765
BmrI	ACTGGG	3 cut(s)	767, 827, 920
BmsI	GCATC	3 cut(s)	157, 846, 1029
BmuI	ACTGGG	3 cut(s)	767, 827, 920
BoxI	GACNNNNGTC	1 cut(s)	149
BplI	GAGNNNNNCTC	2 cut(s)	80, 112
BsaI	GGTCTC	1 cut(s)	452
BsaJI	CCNNGG	1 cut(s)	763
BsaWI	WCCGGW	1 cut(s)	342
Bsc4I	CCNNNNNNNGG	4 cut(s)	442, 734, 769, 846
Bse1I	ACTGG	4 cut(s)	762, 786, 833, 926
BseAI	TCCGGA	1 cut(s)	342
BseBI	CCWGG	2 cut(s)	689, 765
BseDI	CCNNGG	1 cut(s)	763
BseGI	GGATG	3 cut(s)	295, 647, 1043
BseLI	CCNNNNNNNGG	4 cut(s)	442, 734, 769, 846
BseMII	CTCAG	4 cut(s)	111, 351, 855, 894
BseNI	ACTGG	4 cut(s)	762, 786, 833, 926
BseSI	GKGCMC	1 cut(s)	764
BseXI	GCAGC	1 cut(s)	696
BsgI	GTGCAG	1 cut(s)	1030
Bsh1236I	CGCG	3 cut(s)	148, 150, 731
Bsh1285I	CGRYCG	1 cut(s)	1165
BshFI	GGCC	1 cut(s)	762
BsiEI	CGRYCG	1 cut(s)	1165
BsiSI	CCGG	1 cut(s)	343
BslFI	GGGAC	1 cut(s)	814
BslI	CCNNNNNNNGG	4 cut(s)	442, 734, 769, 846
BsmAI	GTCTC	1 cut(s)	452
BsmFI	GGGAC	1 cut(s)	814
BsmI	GAATGC	3 cut(s)	338, 1022, 1051
BsnI	GGCC	1 cut(s)	762
Bso31I	GGTCTC	1 cut(s)	452
Bsp120I	GGGCCC	1 cut(s)	760
Bsp1286I	GDGCHC	1 cut(s)	764
Bsp13I	TCCGGA	1 cut(s)	342
Bsp143I	GATC	7 cut(s)	309, 319, 456, 892, 1072, 1162, 1177
BspACI	CCGC	1 cut(s)	729
BspANI	GGCC	1 cut(s)	762
BspCNI	CTCAG	4 cut(s)	110, 352, 856, 895
BspEI	TCCGGA	1 cut(s)	342
BspFNI	CGCG	3 cut(s)	148, 150, 731
BspLI	GGNNCC	3 cut(s)	366, 762, 830
BspMI	ACCTGC	1 cut(s)	953
BspPI	GGATC	2 cut(s)	314, 1080
BspTNI	GGTCTC	1 cut(s)	452
BsrI	ACTGG	4 cut(s)	762, 786, 833, 926
BssECI	CCNNGG	1 cut(s)	763
BssMI	GATC	7 cut(s)	309, 319, 456, 892, 1072, 1162, 1177
BssSI	CACGAG	1 cut(s)	993
Bst2BI	CACGAG	1 cut(s)	993
Bst2UI	CCWGG	2 cut(s)	689, 765
Bst4CI	ACNGT	1 cut(s)	982
Bst6I	CTCTTC	1 cut(s)	1146
BstAPI	GCANNNNNTGC	2 cut(s)	1008, 1017
BstC8I	GCNNGC	2 cut(s)	900, 1000
BstDEI	CTNAG	4 cut(s)	97, 360, 864, 903
BstF5I	GGATG	3 cut(s)	295, 647, 1043
BstFNI	CGCG	3 cut(s)	148, 150, 731
BstHHI	GCGC	2 cut(s)	150, 733
BstKTI	GATC	7 cut(s)	312, 322, 459, 895, 1075, 1165, 1180
BstMAI	GTCTC	1 cut(s)	452
BstMBI	GATC	7 cut(s)	309, 319, 456, 892, 1072, 1162, 1177
BstMCI	CGRYCG	1 cut(s)	1165
BstMWI	GCNNNNNNNGC	5 cut(s)	112, 156, 983, 1008, 1017
BstNI	CCWGG	2 cut(s)	689, 765
BstNSI	RCATGY	1 cut(s)	794
BstPAI	GACNNNNGTC	1 cut(s)	149
BstSCI	CCNGG	2 cut(s)	687, 763
BstSFI	CTRYAG	1 cut(s)	981
BstSLI	GKGCMC	1 cut(s)	764
BstUI	CGCG	3 cut(s)	148, 150, 731
BstV1I	GCAGC	1 cut(s)	696
BsuRI	GGCC	1 cut(s)	762
BtsCI	GGATG	3 cut(s)	295, 647, 1043
BveI	ACCTGC	1 cut(s)	953
Cac8I	GCNNGC	2 cut(s)	900, 1000
CaiI	CAGNNNCTG	2 cut(s)	41, 56
CfoI	GCGC	2 cut(s)	150, 733
Cfr13I	GGNCC	3 cut(s)	760, 761, 828
CseI	GACGC	2 cut(s)	139, 154
Csp6I	GTAC	2 cut(s)	428, 872
CviAII	CATG	2 cut(s)	536, 791
CviQI	GTAC	2 cut(s)	428, 872
DdeI	CTNAG	4 cut(s)	97, 360, 864, 903
DpnI	GATC	7 cut(s)	311, 321, 458, 894, 1074, 1164, 1179
DpnII	GATC	7 cut(s)	309, 319, 456, 892, 1072, 1162, 1177
DraIII	CACNNNGTG	1 cut(s)	1008
Eam1104I	CTCTTC	1 cut(s)	1146
EarI	CTCTTC	1 cut(s)	1146
Eco24I	GRGCYC	1 cut(s)	764
Eco31I	GGTCTC	1 cut(s)	452
Eco47I	GGWCC	1 cut(s)	828
Eco57I	CTGAAG	2 cut(s)	63, 1152
EcoO109I	RGGNCCY	1 cut(s)	761
EcoRI	GAATTC	1 cut(s)	134
EcoRII	CCWGG	2 cut(s)	687, 763
EcoT22I	ATGCAT	2 cut(s)	340, 1022
EcoT38I	GRGCYC	1 cut(s)	764
FaeI	CATG	2 cut(s)	539, 794
FaqI	GGGAC	1 cut(s)	814
FatI	CATG	2 cut(s)	535, 790
FauI	CCCGC	1 cut(s)	736
Fnu4HI	GCNGC	1 cut(s)	685
FokI	GGATG	3 cut(s)	302, 634, 1050
FriOI	GRGCYC	1 cut(s)	764
Fsp4HI	GCNGC	1 cut(s)	685
FspBI	CTAG	2 cut(s)	471, 753
GlaI	GCGC	2 cut(s)	149, 732
GluI	GCNGC	1 cut(s)	685
HaeIII	GGCC	1 cut(s)	762
HapII	CCGG	1 cut(s)	343
HgaI	GACGC	2 cut(s)	139, 154
HhaI	GCGC	2 cut(s)	150, 733
Hin1II	CATG	2 cut(s)	539, 794
Hin6I	GCGC	2 cut(s)	148, 731
HinP1I	GCGC	2 cut(s)	148, 731
HinfI	GANTC	8 cut(s)	38, 53, 91, 348, 623, 632, 692, 1094
HpaII	CCGG	1 cut(s)	343
Hpy166II	GTNNAC	1 cut(s)	548
Hpy188I	TCNGA	8 cut(s)	10, 37, 43, 100, 361, 456, 1025, 1177
Hpy188III	TCNNGA	6 cut(s)	139, 343, 770, 863, 1115, 1185
Hpy8I	GTNNAC	1 cut(s)	548
Hpy99I	CGWCG	2 cut(s)	31, 155
HpyAV	CCTTC	5 cut(s)	38, 132, 1022, 1027, 1063
HpyCH4III	ACNGT	1 cut(s)	982
HpyCH4IV	ACGT	2 cut(s)	26, 562
HpyCH4V	TGCA	9 cut(s)	159, 338, 398, 488, 684, 1002, 1011, 1020, 1049
HpyF10VI	GCNNNNNNNGC	5 cut(s)	112, 156, 983, 1008, 1017
HpyF3I	CTNAG	4 cut(s)	97, 360, 864, 903
HpySE526I	ACGT	2 cut(s)	26, 562
Hsp92II	CATG	2 cut(s)	539, 794
HspAI	GCGC	2 cut(s)	148, 731
Kpn2I	TCCGGA	1 cut(s)	342
Kzo9I	GATC	7 cut(s)	309, 319, 456, 892, 1072, 1162, 1177
LmnI	GCTCC	3 cut(s)	47, 175, 537
Lsp1109I	GCAGC	1 cut(s)	696
LweI	GCATC	3 cut(s)	157, 846, 1029
MaeI	CTAG	2 cut(s)	471, 753
MaeII	ACGT	2 cut(s)	26, 562
MaeIII	GTNAC	4 cut(s)	251, 835, 1056, 1126
MalI	GATC	7 cut(s)	311, 321, 458, 894, 1074, 1164, 1179
MboI	GATC	7 cut(s)	309, 319, 456, 892, 1072, 1162, 1177
MboII	GAAGA	6 cut(s)	29, 893, 902, 959, 1153, 1163
MhlI	GDGCHC	1 cut(s)	764
MluCI	AATT	5 cut(s)	80, 134, 584, 704, 774
MlyI	GAGTC	2 cut(s)	47, 47
MnlI	CCTC	7 cut(s)	135, 280, 355, 362, 661, 966, 1122
Mph1103I	ATGCAT	2 cut(s)	340, 1022
MroI	TCCGGA	1 cut(s)	342
MroXI	GAANNNNTTC	1 cut(s)	273
MseI	TTAA	3 cut(s)	528, 798, 930
MspI	CCGG	1 cut(s)	343
MspR9I	CCNGG	2 cut(s)	689, 765
Mva1269I	GAATGC	3 cut(s)	338, 1022, 1051
MvaI	CCWGG	2 cut(s)	689, 765
MvnI	CGCG	3 cut(s)	148, 150, 731
MwoI	GCNNNNNNNGC	5 cut(s)	112, 156, 983, 1008, 1017
NdeII	GATC	7 cut(s)	309, 319, 456, 892, 1072, 1162, 1177
NlaIII	CATG	2 cut(s)	539, 794
NlaIV	GGNNCC	3 cut(s)	366, 762, 830
NmuCI	GTSAC	1 cut(s)	251
NsiI	ATGCAT	2 cut(s)	340, 1022
NspI	RCATGY	1 cut(s)	794
PctI	GAATGC	3 cut(s)	338, 1022, 1051
PdmI	GAANNNNTTC	1 cut(s)	273
PfeI	GAWTC	6 cut(s)	91, 348, 623, 632, 692, 1094
PflMI	CCANNNNNTGG	1 cut(s)	442
PkrI	GCNGC	1 cut(s)	686
Ple19I	CGATCG	1 cut(s)	1165
PleI	GAGTC	2 cut(s)	46, 47
PpsI	GAGTC	2 cut(s)	46, 47
PshAI	GACNNNNGTC	1 cut(s)	149
Psp6I	CCWGG	2 cut(s)	687, 763
PspGI	CCWGG	2 cut(s)	687, 763
PspN4I	GGNNCC	3 cut(s)	366, 762, 830
PspOMI	GGGCCC	1 cut(s)	760
PspPI	GGNCC	3 cut(s)	760, 761, 828
PstNI	CAGNNNCTG	2 cut(s)	41, 56
PvuI	CGATCG	1 cut(s)	1165
RsaI	GTAC	2 cut(s)	429, 873
RsaNI	GTAC	2 cut(s)	428, 872
SaqAI	TTAA	3 cut(s)	528, 798, 930
SatI	GCNGC	1 cut(s)	685
Sau3AI	GATC	7 cut(s)	309, 319, 456, 892, 1072, 1162, 1177
Sau96I	GGNCC	3 cut(s)	760, 761, 828
ScaI	AGTACT	1 cut(s)	429
SchI	GAGTC	2 cut(s)	47, 47
ScrFI	CCNGG	2 cut(s)	689, 765
SduI	GDGCHC	1 cut(s)	764
SfaNI	GCATC	3 cut(s)	157, 846, 1029
SfcI	CTRYAG	1 cut(s)	981
SinI	GGWCC	1 cut(s)	828
Sse9I	AATT	5 cut(s)	80, 134, 584, 704, 774
SsiI	CCGC	1 cut(s)	729
SspMI	CTAG	2 cut(s)	471, 753
StyD4I	CCNGG	2 cut(s)	687, 763
TaaI	ACNGT	1 cut(s)	982
TaiI	ACGT	2 cut(s)	29, 565
TaqI	TCGA	2 cut(s)	29, 153
TasI	AATT	5 cut(s)	80, 134, 584, 704, 774
TatI	WGTACW	2 cut(s)	427, 871
TfiI	GAWTC	6 cut(s)	91, 348, 623, 632, 692, 1094
Tru1I	TTAA	3 cut(s)	528, 798, 930
Tru9I	TTAA	3 cut(s)	528, 798, 930
TseFI	GTSAC	1 cut(s)	251
TseI	GCWGC	1 cut(s)	684
Tsp45I	GTSAC	1 cut(s)	251
TspDTI	ATGAA	6 cut(s)	167, 201, 306, 438, 636, 1069
Van91I	CCANNNNNTGG	1 cut(s)	442
VpaK11BI	GGWCC	1 cut(s)	828
XapI	RAATTY	3 cut(s)	80, 134, 704
XceI	RCATGY	1 cut(s)	794
XmnI	GAANNNNTTC	1 cut(s)	273
XspI	CTAG	2 cut(s)	471, 753
ZrmI	AGTACT	1 cut(s)	429
Zsp2I	ATGCAT	2 cut(s)	340, 1022

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.