Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0007965

Physical Location & Seq

Genomic Coordinates Reverse (-)

2899357 .. 2903001

Gene Structure 3645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1033500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGTCGTCCAGTACCGAAGATACGACGTCGAGTTCAGAGTCCGAAGCAGCAGACTCTGCGAAGGCGAACTCCACGCTGGAGTTCATAGAGAAGCTCTCAGATGTGCCAATGGGGCGGCTGCCCCCTAACATCGAATTCCAGAGGACACGTGTCGAGTGCAAGGCTGATGCTCCCATTCATGTAACAACTGATACTTTTCAGTATAATGGTGCTTATGCATCAATGGGGATGGAGTTTGATATGATCGGCATTGATCCTGCACTTGCCAATGCATTCCGGAGAATCCTCATAGCTGAGGTTCCCACAATGGCTATTGAAAAAGTTCTTATTGCTGACAATACAACAGTAATCCAAGATGAAGTACTTGCCCACAGGTTGGGTCTCATTCCGATCAAGGTTGACCCCAGATCATTTGAATTTACAGGAAATAATACACCAGATGAGAAGAACACCATTGTTTTTAAGCTCCATGTACAATGTAAACGAGGGGGGCAGCGTATTTCAGTAAAGTCAAAAGAATTGATTTGGTTGCCAAATGGGAGTGAGTTTCCATTGGAATCACAAGATACCAAGTCAGAGTCGTCATCAAAACAAAAAACATATACATCATTTACTTGCAGTCAGGATTCCTTGCCAGAATTTTCCGACAATCCAATAGCCCCCACGAGTGGAGATATTACAATTGCTAGACTAGGCCCTGGTCAGGTAATTGAACTGGAAGCACATGCTGTTAAGGGCATTGGTAAAACACATGCAAAATGGTCTCCAGTTGCCCCCGTTTGGTATCGGATGCTTCCTGAGGTTATAATATCGCAAGATATTGAAGATGAGATGGCCGAGAAACTTGTGGCAACTTGCCCAGTTAAAGTATTCGATATTGAAGATATTGGCAACGGCAAGAAAAGGGCAACTGTAGCCAGGCCACGAGCTTGCACACTGTGCAGGGAGTGCATCAGAGAAGGGAAGGGTTGGGAGAATTCTATCTCTCTGCAGCGTAAGAAGGATCATTTCATTTTTAAAATTGAATCGACTGGGGTATTGCCTCCCGAAGTCTTATTTACTGAAGCTGTGAAGATTCTGGAAGACAAGTGTGATCGTGTTATTTCTGATCTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0005730 GO:0005736 GO:0030880 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0055029 GO:0061695 GO:0070013 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

RNA_pol_A_bac RNA_pol_L

Protein Analysis

373

Amino Acids

41.18

Weight (kDa)

5.24

Isoelectric Point (pI)

49.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_L	PF01193	78 - 364	2.5e-24	RNA polymerase Rpb3/Rpb11 dimerisation domain
RNA_pol_A_bac	PF01000	119 - 253	3.2e-10	RNA polymerase Rpb3/RpoA insert domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007965)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60620 AT1G60620
fragaria_vesca	FvH4_3g42690 FvH4_3g42690
malus_domestica	MD03G1029700.v1.1 MD11G1033100.v1.1 MD11G1033500.v1.1
prunus_persica	Prupe.6G025800_v2.0.a1 Prupe.6G025800_v2.0.a1 Prupe.6G025800_v2.0.a1 Prupe.6G025800_v2.0.a1 Prupe.6G025800_v2.0.a1
pyrus_communis	pycom03g02470 pycom11g02880
rosa_chinensis	RchiOBHm_Chr5g0076331
rosa_laevigata	RLG00000036618
rosa_multiflora	Rmu_sc0002400.1_g000006
rosa_roxburghii	Rroxscaffold_1G00005480
rosa_rugosa	Rorug05G0447400
rosa_samantha	Rh5AG502300 Rh5BG524100 Rh5CG547700 Rh5DG536200
rosa_wichuraiana	Rw5G046610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	806
AatII	GACGTC	1 cut(s)	29
AccB7I	CCANNNNNTGG	1 cut(s)	376
AccIII	TCCGGA	1 cut(s)	276
AciI	CCGC	1 cut(s)	115
AclWI	GGATC	2 cut(s)	248, 1011
AcoI	YGGCCR	1 cut(s)	834
AcsI	RAATTY	4 cut(s)	134, 416, 638, 976
AcuI	CTGAAG	1 cut(s)	1083
AcvI	CACGTG	1 cut(s)	149
AcyI	GRCGYC	1 cut(s)	26
AdeI	CACNNNGTG	1 cut(s)	939
AfaI	GTAC	3 cut(s)	13, 363, 474
AfiI	CCNNNNNNNGG	4 cut(s)	376, 668, 703, 780
AflIII	ACRYGT	2 cut(s)	146, 148
AgsI	TTSAA	6 cut(s)	317, 416, 713, 824, 881, 1025
AjnI	CCWGG	2 cut(s)	697, 917
AluBI	AGCT	5 cut(s)	94, 293, 466, 929, 1067
AluI	AGCT	5 cut(s)	94, 293, 466, 929, 1067
Alw26I	GTCTC	2 cut(s)	386, 768
AlwI	GGATC	2 cut(s)	248, 1011
AlwNI	CAGNNNCTG	1 cut(s)	56
Aor13HI	TCCGGA	1 cut(s)	276
AoxI	GGCC	3 cut(s)	694, 834, 920
ApeKI	GCWGC	4 cut(s)	47, 118, 493, 991
ApoI	RAATTY	4 cut(s)	134, 416, 638, 976
Asp700I	GAANNNNTTC	1 cut(s)	321
AspS9I	GGNCC	1 cut(s)	695
AxyI	CCTNAGG	1 cut(s)	798
BauI	CACGAG	2 cut(s)	664, 924
BbrPI	CACGTG	1 cut(s)	149
BbsI	GAAGAC	1 cut(s)	1089
BbvCI	CCTCAGC	1 cut(s)	294
BbvI	GCAGC	4 cut(s)	59, 105, 505, 1003
BccI	CCATC	2 cut(s)	223, 826
BceAI	ACGGC	1 cut(s)	910
BciT130I	CCWGG	2 cut(s)	699, 919
BcoDI	GTCTC	2 cut(s)	386, 768
BfaI	CTAG	2 cut(s)	687, 692
BfmI	CTRYAG	2 cut(s)	912, 989
BglI	GCCNNNNNGGC	1 cut(s)	112
BisI	GCNGC	5 cut(s)	48, 116, 119, 494, 992
BlsI	GCNGC	5 cut(s)	49, 117, 120, 495, 993
BmcAI	AGTACT	1 cut(s)	363
Bme1390I	CCNGG	2 cut(s)	699, 919
BmgT120I	GGNCC	1 cut(s)	695
BmiI	GGNNCC	1 cut(s)	300
BmrFI	CCNGG	2 cut(s)	699, 919
BmrI	ACTGGG	2 cut(s)	854, 1041
BmsI	GCATC	4 cut(s)	157, 227, 780, 960
BmuI	ACTGGG	2 cut(s)	854, 1041
BoxI	GACNNNNGTC	1 cut(s)	149
BpiI	GAAGAC	1 cut(s)	1089
BplI	GAGNNNNNCTC	2 cut(s)	80, 112
BpmI	CTGGAG	2 cut(s)	98, 750
Bpu10I	CCTNAGC	1 cut(s)	294
BsaAI	YACGTR	1 cut(s)	149
BsaHI	GRCGYC	1 cut(s)	26
BsaI	GGTCTC	2 cut(s)	386, 768
BsaJI	CCNNGG	1 cut(s)	697
BsaWI	WCCGGW	1 cut(s)	276
Bsc4I	CCNNNNNNNGG	4 cut(s)	376, 668, 703, 780
Bse1I	ACTGG	5 cut(s)	9, 720, 767, 860, 1036
Bse21I	CCTNAGG	1 cut(s)	798
BseAI	TCCGGA	1 cut(s)	276
BseBI	CCWGG	2 cut(s)	699, 919
BseDI	CCNNGG	1 cut(s)	697
BseGI	GGATG	2 cut(s)	234, 795
BseLI	CCNNNNNNNGG	4 cut(s)	376, 668, 703, 780
BseMII	CTCAG	3 cut(s)	111, 285, 789
BseNI	ACTGG	5 cut(s)	9, 720, 767, 860, 1036
BseXI	GCAGC	4 cut(s)	59, 105, 505, 1003
BsgI	GTGCAG	2 cut(s)	243, 961
BshFI	GGCC	3 cut(s)	696, 836, 922
BsiSI	CCGG	1 cut(s)	277
BslI	CCNNNNNNNGG	4 cut(s)	376, 668, 703, 780
BsmAI	GTCTC	2 cut(s)	386, 768
BsmI	GAATGC	1 cut(s)	272
BsnI	GGCC	3 cut(s)	696, 836, 922
Bso31I	GGTCTC	2 cut(s)	386, 768
Bsp13I	TCCGGA	1 cut(s)	276
Bsp1407I	TGTACA	1 cut(s)	472
Bsp143I	GATC	7 cut(s)	243, 253, 390, 407, 1003, 1093, 1108
BspACI	CCGC	1 cut(s)	115
BspANI	GGCC	3 cut(s)	696, 836, 922
BspCNI	CTCAG	3 cut(s)	110, 286, 790
BspEI	TCCGGA	1 cut(s)	276
BspLI	GGNNCC	1 cut(s)	300
BspMAI	CTGCAG	1 cut(s)	993
BspPI	GGATC	2 cut(s)	248, 1011
BspTNI	GGTCTC	2 cut(s)	386, 768
BsrGI	TGTACA	1 cut(s)	472
BsrI	ACTGG	5 cut(s)	9, 720, 767, 860, 1036
BssECI	CCNNGG	1 cut(s)	697
BssMI	GATC	7 cut(s)	243, 253, 390, 407, 1003, 1093, 1108
BssNI	GRCGYC	1 cut(s)	26
BssSI	CACGAG	2 cut(s)	664, 924
Bst2BI	CACGAG	2 cut(s)	664, 924
Bst2UI	CCWGG	2 cut(s)	699, 919
Bst4CI	ACNGT	3 cut(s)	346, 913, 939
BstACI	GRCGYC	1 cut(s)	26
BstAPI	GCANNNNNTGC	3 cut(s)	56, 939, 948
BstAUI	TGTACA	1 cut(s)	472
BstBAI	YACGTR	1 cut(s)	149
BstC8I	GCNNGC	1 cut(s)	931
BstDEI	CTNAG	3 cut(s)	97, 294, 798
BstF5I	GGATG	2 cut(s)	234, 795
BstKTI	GATC	7 cut(s)	246, 256, 393, 410, 1006, 1096, 1111
BstMAI	GTCTC	2 cut(s)	386, 768
BstMBI	GATC	7 cut(s)	243, 253, 390, 407, 1003, 1093, 1108
BstMWI	GCNNNNNNNGC	5 cut(s)	56, 112, 914, 939, 948
BstNI	CCWGG	2 cut(s)	699, 919
BstNSI	RCATGY	2 cut(s)	728, 755
BstPAI	GACNNNNGTC	1 cut(s)	149
BstSCI	CCNGG	2 cut(s)	697, 917
BstSFI	CTRYAG	2 cut(s)	912, 989
BstV1I	GCAGC	4 cut(s)	59, 105, 505, 1003
BstV2I	GAAGAC	1 cut(s)	1089
Bsu36I	CCTNAGG	1 cut(s)	798
BsuRI	GGCC	3 cut(s)	696, 836, 922
BtsCI	GGATG	2 cut(s)	234, 795
BtsIMutI	CAGTG	1 cut(s)	935
Cac8I	GCNNGC	1 cut(s)	931
CaiI	CAGNNNCTG	1 cut(s)	56
Cfr13I	GGNCC	1 cut(s)	695
Csp6I	GTAC	3 cut(s)	12, 362, 473
CviAII	CATG	4 cut(s)	179, 470, 725, 752
CviQI	GTAC	3 cut(s)	12, 362, 473
DdeI	CTNAG	3 cut(s)	97, 294, 798
DpnI	GATC	7 cut(s)	245, 255, 392, 409, 1005, 1095, 1110
DpnII	GATC	7 cut(s)	243, 253, 390, 407, 1003, 1093, 1108
DraI	TTTAAA	1 cut(s)	1018
DraIII	CACNNNGTG	1 cut(s)	939
EaeI	YGGCCR	1 cut(s)	834
Eco31I	GGTCTC	2 cut(s)	386, 768
Eco57I	CTGAAG	1 cut(s)	1083
Eco72I	CACGTG	1 cut(s)	149
Eco81I	CCTNAGG	1 cut(s)	798
EcoO109I	RGGNCCY	1 cut(s)	695
EcoRI	GAATTC	2 cut(s)	134, 976
EcoRII	CCWGG	2 cut(s)	697, 917
EcoT22I	ATGCAT	2 cut(s)	220, 274
FaeI	CATG	4 cut(s)	182, 473, 728, 755
FatI	CATG	4 cut(s)	178, 469, 724, 751
Fnu4HI	GCNGC	5 cut(s)	48, 116, 119, 494, 992
FokI	GGATG	2 cut(s)	241, 802
Fsp4HI	GCNGC	5 cut(s)	48, 116, 119, 494, 992
FspBI	CTAG	2 cut(s)	687, 692
GluI	GCNGC	5 cut(s)	48, 116, 119, 494, 992
GsuI	CTGGAG	2 cut(s)	98, 750
HaeIII	GGCC	3 cut(s)	696, 836, 922
HapII	CCGG	1 cut(s)	277
Hin1I	GRCGYC	1 cut(s)	26
Hin1II	CATG	4 cut(s)	182, 473, 728, 755
HincII	GTYRAC	1 cut(s)	400
HindII	GTYRAC	1 cut(s)	400
HinfI	GANTC	8 cut(s)	38, 53, 282, 557, 578, 626, 1025, 1075
HpaII	CCGG	1 cut(s)	277
Hpy166II	GTNNAC	2 cut(s)	400, 482
Hpy188I	TCNGA	9 cut(s)	37, 43, 100, 390, 577, 646, 789, 956, 1108
Hpy188III	TCNNGA	7 cut(s)	139, 277, 623, 797, 1046, 1079, 1116
Hpy8I	GTNNAC	2 cut(s)	400, 482
Hpy99I	CGWCG	2 cut(s)	28, 31
HpyAV	CCTTC	4 cut(s)	55, 953, 958, 994
HpyCH4III	ACNGT	3 cut(s)	346, 913, 939
HpyCH4IV	ACGT	2 cut(s)	26, 148
HpyF10VI	GCNNNNNNNGC	5 cut(s)	56, 112, 914, 939, 948
HpyF3I	CTNAG	3 cut(s)	97, 294, 798
HpySE526I	ACGT	2 cut(s)	26, 148
Hsp92I	GRCGYC	1 cut(s)	26
Hsp92II	CATG	4 cut(s)	182, 473, 728, 755
Kpn2I	TCCGGA	1 cut(s)	276
Kzo9I	GATC	7 cut(s)	243, 253, 390, 407, 1003, 1093, 1108
LmnI	GCTCC	2 cut(s)	175, 471
Lsp1109I	GCAGC	4 cut(s)	59, 105, 505, 1003
LweI	GCATC	4 cut(s)	157, 227, 780, 960
MaeI	CTAG	2 cut(s)	687, 692
MaeII	ACGT	2 cut(s)	26, 148
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	7 cut(s)	245, 255, 392, 409, 1005, 1095, 1110
MboI	GATC	7 cut(s)	243, 253, 390, 407, 1003, 1093, 1108
MboII	GAAGA	6 cut(s)	29, 457, 836, 893, 1084, 1094
MfeI	CAATTG	1 cut(s)	681
MluCI	AATT	8 cut(s)	134, 416, 518, 638, 681, 708, 976, 1020
MlyI	GAGTC	3 cut(s)	47, 47, 587
MmeI	TCCRAC	1 cut(s)	669
MnlI	CCTC	6 cut(s)	135, 289, 296, 479, 793, 1053
Mph1103I	ATGCAT	2 cut(s)	220, 274
MroI	TCCGGA	1 cut(s)	276
MroXI	GAANNNNTTC	1 cut(s)	321
MseI	TTAA	4 cut(s)	462, 732, 864, 1017
MspI	CCGG	1 cut(s)	277
MspR9I	CCNGG	2 cut(s)	699, 919
MunI	CAATTG	1 cut(s)	681
Mva1269I	GAATGC	1 cut(s)	272
MvaI	CCWGG	2 cut(s)	699, 919
MwoI	GCNNNNNNNGC	5 cut(s)	56, 112, 914, 939, 948
NdeII	GATC	7 cut(s)	243, 253, 390, 407, 1003, 1093, 1108
NlaIII	CATG	4 cut(s)	182, 473, 728, 755
NlaIV	GGNNCC	1 cut(s)	300
NmeAIII	GCCGAG	1 cut(s)	862
NsiI	ATGCAT	2 cut(s)	220, 274
NspI	RCATGY	2 cut(s)	728, 755
PctI	GAATGC	1 cut(s)	272
PdmI	GAANNNNTTC	1 cut(s)	321
PfeI	GAWTC	5 cut(s)	282, 557, 626, 1025, 1075
PflMI	CCANNNNNTGG	1 cut(s)	376
PkrI	GCNGC	5 cut(s)	49, 117, 120, 495, 993
PleI	GAGTC	3 cut(s)	46, 47, 586
PmaCI	CACGTG	1 cut(s)	149
PmlI	CACGTG	1 cut(s)	149
PpsI	GAGTC	3 cut(s)	46, 47, 586
Ppu21I	YACGTR	1 cut(s)	149
PshAI	GACNNNNGTC	1 cut(s)	149
PsiI	TTATAA	1 cut(s)	806
Psp6I	CCWGG	2 cut(s)	697, 917
PspCI	CACGTG	1 cut(s)	149
PspGI	CCWGG	2 cut(s)	697, 917
PspN4I	GGNNCC	1 cut(s)	300
PspPI	GGNCC	1 cut(s)	695
PstI	CTGCAG	1 cut(s)	993
PstNI	CAGNNNCTG	1 cut(s)	56
RsaI	GTAC	3 cut(s)	13, 363, 474
RsaNI	GTAC	3 cut(s)	12, 362, 473
SaqAI	TTAA	4 cut(s)	462, 732, 864, 1017
SatI	GCNGC	5 cut(s)	48, 116, 119, 494, 992
Sau3AI	GATC	7 cut(s)	243, 253, 390, 407, 1003, 1093, 1108
Sau96I	GGNCC	1 cut(s)	695
ScaI	AGTACT	1 cut(s)	363
SchI	GAGTC	3 cut(s)	47, 47, 587
ScrFI	CCNGG	2 cut(s)	699, 919
SfaNI	GCATC	4 cut(s)	157, 227, 780, 960
SfcI	CTRYAG	2 cut(s)	912, 989
Sse9I	AATT	8 cut(s)	134, 416, 518, 638, 681, 708, 976, 1020
SsiI	CCGC	1 cut(s)	115
SspMI	CTAG	2 cut(s)	687, 692
StyD4I	CCNGG	2 cut(s)	697, 917
TaaI	ACNGT	3 cut(s)	346, 913, 939
TaiI	ACGT	2 cut(s)	29, 151
TaqI	TCGA	5 cut(s)	29, 132, 153, 873, 1028
TasI	AATT	8 cut(s)	134, 416, 518, 638, 681, 708, 976, 1020
TatI	WGTACW	2 cut(s)	361, 472
TauI	GCSGC	1 cut(s)	118
TfiI	GAWTC	5 cut(s)	282, 557, 626, 1025, 1075
Tru1I	TTAA	4 cut(s)	462, 732, 864, 1017
Tru9I	TTAA	4 cut(s)	462, 732, 864, 1017
TscAI	CASTG	1 cut(s)	942
TseI	GCWGC	4 cut(s)	47, 118, 493, 991
TspDTI	ATGAA	4 cut(s)	73, 167, 372, 1000
TspRI	CASTG	1 cut(s)	942
Van91I	CCANNNNNTGG	1 cut(s)	376
XapI	RAATTY	4 cut(s)	134, 416, 638, 976
XceI	RCATGY	2 cut(s)	728, 755
XmnI	GAANNNNTTC	1 cut(s)	321
XspI	CTAG	2 cut(s)	687, 692
ZraI	GACGTC	1 cut(s)	27
ZrmI	AGTACT	1 cut(s)	363
Zsp2I	ATGCAT	2 cut(s)	220, 274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.