AT1G61780

Microtubule-associated protein CRIPT

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0016188
Physical Location & Seq
Reverse (-)
22812573 .. 22814162
1590 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G61780.1

Sequence Viewer

Length: 297 bp
ATGGTTTGCGATAAGTGTGAGAAGAAGTTATCGAAAGTGATAGTTCCTGATAAGTGGAAGGATGGTGCTCGTAATGTAACTGAAGGTGGTGGTCGTAAAATCAATGAGAATAAGCTTCTCTCCAAGAAGAATAGATGGTCACCTTACAGTACCTGTACCACAAAATGTATGATCTGCAAGCAGCAAGTGCATCAAGATGGTAAATACTGTCACACATGTGCCTATAGCAAAGGAGTGTGCGCAATGTGCGGGAAGCAAGTGTTGGACACCAAGATGTACAAGCAAAGCAATGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cript

Protein Analysis

98

Amino Acids

11.11

Weight (kDa)

9.43

Isoelectric Point (pI)

48.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cript PF10235 11 - 97 2.8e-35 Microtubule-associated protein CRIPT
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016188)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G61780
fragaria_vesca FvH4_3g02640
malus_domestica MD05G1341600.v1.1 MD10G1315000.v1.1
prunus_persica Prupe.4G025700_v2.0.a1
pyrus_communis pycom05g31070
rosa_chinensis RchiOBHm_Chr5g0003931
rosa_multiflora Rmu_sc0011733.1_g000001
rosa_roxburghii Rroxscaffold_1G00072040
rosa_rugosa Rorug04G0408000
rosa_samantha Rh5AG035700 Rh5BG034300 Rh5CG038200 Rh5DG034400
rosa_wichuraiana Rw5G003260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 241
AciI CCGC 1 cut(s) 249
AcuI CTGAAG 1 cut(s) 102
AfaI GTAC 3 cut(s) 151, 157, 278
AflIII ACRYGT 1 cut(s) 215
AjuI GAANNNNNNNTTGG 2 cut(s) 245, 277
AleI CACNNNNGTG 1 cut(s) 216
AluBI AGCT 1 cut(s) 115
AluI AGCT 1 cut(s) 115
Alw21I GWGCWC 1 cut(s) 70
AlwNI CAGNNNCTG 1 cut(s) 153
ApeKI GCWGC 1 cut(s) 181
AspLEI GCGC 1 cut(s) 242
AsuHPI GGTGA 1 cut(s) 132
Bbv12I GWGCWC 1 cut(s) 70
BbvI GCAGC 1 cut(s) 193
BccI CCATC 3 cut(s) 56, 129, 191
BfmI CTRYAG 1 cut(s) 223
BisI GCNGC 1 cut(s) 182
BlsI GCNGC 1 cut(s) 183
BmsI GCATC 1 cut(s) 199
Bse3DI GCAATG 2 cut(s) 249, 295
BseGI GGATG 1 cut(s) 67
BseMI GCAATG 2 cut(s) 249, 295
BseXI GCAGC 1 cut(s) 193
BsiHKAI GWGCWC 1 cut(s) 70
Bsp1286I GDGCHC 1 cut(s) 70
Bsp1407I TGTACA 1 cut(s) 276
Bsp143I GATC 1 cut(s) 171
BspACI CCGC 1 cut(s) 249
BsrDI GCAATG 2 cut(s) 249, 295
BsrGI TGTACA 1 cut(s) 276
BssMI GATC 1 cut(s) 171
Bst4CI ACNGT 2 cut(s) 149, 209
BstAPI GCANNNNNTGC 1 cut(s) 187
BstAUI TGTACA 1 cut(s) 276
BstC8I GCNNGC 1 cut(s) 179
BstEII GGTNACC 1 cut(s) 138
BstF5I GGATG 1 cut(s) 67
BstHHI GCGC 1 cut(s) 242
BstKTI GATC 1 cut(s) 174
BstMBI GATC 1 cut(s) 171
BstMWI GCNNNNNNNGC 2 cut(s) 187, 246
BstNSI RCATGY 1 cut(s) 219
BstPI GGTNACC 1 cut(s) 138
BstSFI CTRYAG 1 cut(s) 223
BstV1I GCAGC 1 cut(s) 193
BtsCI GGATG 1 cut(s) 67
Cac8I GCNNGC 1 cut(s) 179
CaiI CAGNNNCTG 1 cut(s) 153
CfoI GCGC 1 cut(s) 242
Csp6I GTAC 3 cut(s) 150, 156, 277
CviAII CATG 1 cut(s) 216
CviJI RGCY 1 cut(s) 115
CviKI_1 RGCY 1 cut(s) 115
CviQI GTAC 3 cut(s) 150, 156, 277
DpnI GATC 1 cut(s) 173
DpnII GATC 1 cut(s) 171
Eco57I CTGAAG 1 cut(s) 102
Eco91I GGTNACC 1 cut(s) 138
EcoO65I GGTNACC 1 cut(s) 138
FaeI CATG 1 cut(s) 219
FaiI YATR 4 cut(s) 170, 217, 225, 295
FatI CATG 1 cut(s) 215
FauI CCCGC 1 cut(s) 242
Fnu4HI GCNGC 1 cut(s) 182
FokI GGATG 1 cut(s) 74
Fsp4HI GCNGC 1 cut(s) 182
FspI TGCGCA 1 cut(s) 241
GlaI GCGC 1 cut(s) 241
GluI GCNGC 1 cut(s) 182
HhaI GCGC 1 cut(s) 242
Hin1II CATG 1 cut(s) 219
Hin6I GCGC 1 cut(s) 240
HinP1I GCGC 1 cut(s) 240
HindIII AAGCTT 1 cut(s) 113
HphI GGTGA 1 cut(s) 132
Hpy188III TCNNGA 2 cut(s) 47, 194
HpyAV CCTTC 2 cut(s) 52, 77
HpyCH4III ACNGT 2 cut(s) 149, 209
HpyCH4V TGCA 2 cut(s) 177, 190
HpyF10VI GCNNNNNNNGC 2 cut(s) 187, 246
Hsp92II CATG 1 cut(s) 219
HspAI GCGC 1 cut(s) 240
Kzo9I GATC 1 cut(s) 171
LpnPI CCDG 2 cut(s) 60, 166
Lsp1109I GCAGC 1 cut(s) 193
LweI GCATC 1 cut(s) 199
MaeIII GTNAC 3 cut(s) 76, 138, 209
MalI GATC 1 cut(s) 173
MboI GATC 1 cut(s) 171
MboII GAAGA 2 cut(s) 34, 139
MhlI GDGCHC 1 cut(s) 70
MmeI TCCRAC 1 cut(s) 243
MslI CAYNNNNRTG 3 cut(s) 195, 216, 272
MwoI GCNNNNNNNGC 2 cut(s) 187, 246
NdeII GATC 1 cut(s) 171
NlaIII CATG 1 cut(s) 219
NmuCI GTSAC 2 cut(s) 138, 209
NsbI TGCGCA 1 cut(s) 241
NspI RCATGY 1 cut(s) 219
OliI CACNNNNGTG 1 cut(s) 216
PciI ACATGT 1 cut(s) 215
PkrI GCNGC 1 cut(s) 183
PscI ACATGT 1 cut(s) 215
PspEI GGTNACC 1 cut(s) 138
PstNI CAGNNNCTG 1 cut(s) 153
RsaI GTAC 3 cut(s) 151, 157, 278
RsaNI GTAC 3 cut(s) 150, 156, 277
RseI CAYNNNNRTG 3 cut(s) 195, 216, 272
SatI GCNGC 1 cut(s) 182
Sau3AI GATC 1 cut(s) 171
SduI GDGCHC 1 cut(s) 70
SetI ASST 4 cut(s) 88, 117, 145, 155
SfaNI GCATC 1 cut(s) 199
SfcI CTRYAG 1 cut(s) 223
SmiMI CAYNNNNRTG 3 cut(s) 195, 216, 272
SsiI CCGC 1 cut(s) 249
TaaI ACNGT 2 cut(s) 149, 209
TaqI TCGA 1 cut(s) 32
TatI WGTACW 1 cut(s) 276
TseFI GTSAC 2 cut(s) 138, 209
TseI GCWGC 1 cut(s) 181
Tsp45I GTSAC 2 cut(s) 138, 209
XceI RCATGY 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.