pycom05g31070

Cysteine-rich PDZ-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0016188
Physical Location & Seq
Reverse (-)
30952636 .. 30953841
1206 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g31070.3

Sequence Viewer

Length: 291 bp
ATGGTGTGCGAAAAGTGTGAGAAGAAGCTTTCGAAGGTGATAGTGCCGGACAAGTGGAAGGAAGGTGCCAGTAACACCACCGAAGGCGGTGGCCGGAAAATCAACGAGAACAAGCTCCTCTCCAAGAAGAAAAGGTGGACTCCATATGGAACTACCAAGTGCATCATTTGCAAGCAGCAAGTACACCAGGATGGCAAATACTGTCACACGTGTGCTTACTCCAAAGGAGTTTGTGCGATGTGCGGGAAGCAAGTACTTGATACCAAGCTTTACAAACAAAGCAATGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cript

Protein Analysis

97

Amino Acids

10.83

Weight (kDa)

9.47

Isoelectric Point (pI)

29.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016188)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G61780
fragaria_vesca FvH4_3g02640
malus_domestica MD05G1341600.v1.1 MD10G1315000.v1.1
prunus_persica Prupe.4G025700_v2.0.a1
pyrus_communis pycom05g31070
rosa_chinensis RchiOBHm_Chr5g0003931
rosa_multiflora Rmu_sc0011733.1_g000001
rosa_roxburghii Rroxscaffold_1G00072040
rosa_rugosa Rorug04G0408000
rosa_samantha Rh5AG035700 Rh5BG034300 Rh5CG038200 Rh5DG034400
rosa_wichuraiana Rw5G003260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 65
AciI CCGC 2 cut(s) 87, 243
AcoI YGGCCR 1 cut(s) 91
AcvI CACGTG 1 cut(s) 210
AfaI GTAC 2 cut(s) 183, 255
AflIII ACRYGT 2 cut(s) 207, 209
AjnI CCWGG 1 cut(s) 186
AleI CACNNNNGTG 1 cut(s) 210
AluBI AGCT 3 cut(s) 28, 115, 268
AluI AGCT 3 cut(s) 28, 115, 268
AoxI GGCC 1 cut(s) 91
ApeKI GCWGC 1 cut(s) 175
AsuHPI GGTGA 1 cut(s) 49
AsuII TTCGAA 1 cut(s) 32
BanI GGYRCC 1 cut(s) 65
BbrPI CACGTG 1 cut(s) 210
BbvI GCAGC 1 cut(s) 187
BccI CCATC 1 cut(s) 185
BciT130I CCWGG 1 cut(s) 188
BisI GCNGC 1 cut(s) 176
BlsI GCNGC 1 cut(s) 177
BmcAI AGTACT 1 cut(s) 255
Bme1390I CCNGG 1 cut(s) 188
BmiI GGNNCC 1 cut(s) 67
BmrFI CCNGG 1 cut(s) 188
BmsI GCATC 1 cut(s) 171
Bpu14I TTCGAA 1 cut(s) 32
BsaAI YACGTR 1 cut(s) 210
Bse1I ACTGG 1 cut(s) 69
Bse3DI GCAATG 1 cut(s) 289
BseBI CCWGG 1 cut(s) 188
BseGI GGATG 1 cut(s) 196
BseMI GCAATG 1 cut(s) 289
BseNI ACTGG 1 cut(s) 69
BseRI GAGGAG 1 cut(s) 107
BseXI GCAGC 1 cut(s) 187
BshFI GGCC 1 cut(s) 93
BshNI GGYRCC 1 cut(s) 65
BsiSI CCGG 2 cut(s) 47, 94
BsnI GGCC 1 cut(s) 93
Bsp119I TTCGAA 1 cut(s) 32
BspACI CCGC 2 cut(s) 87, 243
BspANI GGCC 1 cut(s) 93
BspLI GGNNCC 1 cut(s) 67
BspT104I TTCGAA 1 cut(s) 32
BspT107I GGYRCC 1 cut(s) 65
BsrDI GCAATG 1 cut(s) 289
BsrI ACTGG 1 cut(s) 69
Bst2UI CCWGG 1 cut(s) 188
Bst4CI ACNGT 1 cut(s) 203
BstAPI GCANNNNNTGC 1 cut(s) 168
BstBAI YACGTR 1 cut(s) 210
BstBI TTCGAA 1 cut(s) 32
BstC8I GCNNGC 1 cut(s) 173
BstF5I GGATG 1 cut(s) 196
BstMWI GCNNNNNNNGC 1 cut(s) 168
BstNI CCWGG 1 cut(s) 188
BstSCI CCNGG 1 cut(s) 186
BstV1I GCAGC 1 cut(s) 187
BsuRI GGCC 1 cut(s) 93
BtgZI GCGATG 1 cut(s) 251
BtsCI GGATG 1 cut(s) 196
Cac8I GCNNGC 1 cut(s) 173
Csp6I GTAC 2 cut(s) 182, 254
CviJI RGCY 4 cut(s) 28, 93, 115, 268
CviKI_1 RGCY 4 cut(s) 28, 93, 115, 268
CviQI GTAC 2 cut(s) 182, 254
EaeI YGGCCR 1 cut(s) 91
Eco72I CACGTG 1 cut(s) 210
EcoRII CCWGG 1 cut(s) 186
FaiI YATR 3 cut(s) 145, 147, 289
FauI CCCGC 1 cut(s) 236
FauNDI CATATG 1 cut(s) 145
Fnu4HI GCNGC 1 cut(s) 176
FokI GGATG 1 cut(s) 203
Fsp4HI GCNGC 1 cut(s) 176
GluI GCNGC 1 cut(s) 176
HaeIII GGCC 1 cut(s) 93
HapII CCGG 2 cut(s) 47, 94
HindIII AAGCTT 2 cut(s) 26, 266
HinfI GANTC 1 cut(s) 139
HpaII CCGG 2 cut(s) 47, 94
HphI GGTGA 1 cut(s) 49
Hpy166II GTNNAC 2 cut(s) 138, 184
Hpy8I GTNNAC 2 cut(s) 138, 184
HpyAV CCTTC 4 cut(s) 28, 52, 56, 77
HpyCH4III ACNGT 1 cut(s) 203
HpyCH4IV ACGT 1 cut(s) 209
HpyCH4V TGCA 2 cut(s) 162, 171
HpyF10VI GCNNNNNNNGC 1 cut(s) 168
HpySE526I ACGT 1 cut(s) 209
LmnI GCTCC 1 cut(s) 120
LpnPI CCDG 5 cut(s) 60, 82, 107, 173, 200
Lsp1109I GCAGC 1 cut(s) 187
LweI GCATC 1 cut(s) 171
MaeII ACGT 1 cut(s) 209
MaeIII GTNAC 2 cut(s) 71, 203
MboII GAAGA 2 cut(s) 34, 139
MlyI GAGTC 1 cut(s) 133
MnlI CCTC 1 cut(s) 128
MslI CAYNNNNRTG 2 cut(s) 189, 210
MspI CCGG 2 cut(s) 47, 94
MspR9I CCNGG 1 cut(s) 188
MvaI CCWGG 1 cut(s) 188
MwoI GCNNNNNNNGC 1 cut(s) 168
NdeI CATATG 1 cut(s) 145
NlaIV GGNNCC 1 cut(s) 67
NmuCI GTSAC 1 cut(s) 203
NspV TTCGAA 1 cut(s) 32
OliI CACNNNNGTG 1 cut(s) 210
PkrI GCNGC 1 cut(s) 177
PleI GAGTC 1 cut(s) 133
PmaCI CACGTG 1 cut(s) 210
PmlI CACGTG 1 cut(s) 210
PpsI GAGTC 1 cut(s) 133
Ppu21I YACGTR 1 cut(s) 210
Psp6I CCWGG 1 cut(s) 186
PspCI CACGTG 1 cut(s) 210
PspGI CCWGG 1 cut(s) 186
PspN4I GGNNCC 1 cut(s) 67
RsaI GTAC 2 cut(s) 183, 255
RsaNI GTAC 2 cut(s) 182, 254
RseI CAYNNNNRTG 2 cut(s) 189, 210
SatI GCNGC 1 cut(s) 176
ScaI AGTACT 1 cut(s) 255
SchI GAGTC 1 cut(s) 133
ScrFI CCNGG 1 cut(s) 188
SetI ASST 7 cut(s) 30, 39, 67, 117, 137, 212, 270
SfaNI GCATC 1 cut(s) 171
SfuI TTCGAA 1 cut(s) 32
SmiMI CAYNNNNRTG 2 cut(s) 189, 210
SsiI CCGC 2 cut(s) 87, 243
StyD4I CCNGG 1 cut(s) 186
TaaI ACNGT 1 cut(s) 203
TaiI ACGT 1 cut(s) 212
TaqI TCGA 1 cut(s) 32
TatI WGTACW 2 cut(s) 181, 253
TseFI GTSAC 1 cut(s) 203
TseI GCWGC 1 cut(s) 175
Tsp45I GTSAC 1 cut(s) 203
ZrmI AGTACT 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.