MD10G1315000.v1.1

Cysteine-rich PDZ-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0016188
Physical Location & Seq
Reverse (-)
39898840 .. 39900630
1791 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1315000.v1.1.491

Sequence Viewer

Length: 291 bp
ATGGTGTGCGACAAGTGCGAGAAGAAGCTTTCGAAGATTATAGTGCCGGACAAGTGGAAGGAAGGTGCCAGTAACACCACCGAAGGCGGTGGCCGGAAAACCAACGAGAACAAGCTCCTCTCCAAGAAGAAAAGGTGGACTCCTTACGGAACTACCAAGTGCATCATTTGCAAGCAGCAAGTACACCAGGATGGCAAATACTGTCACACATGTGCCTACTCCAAAGGAGTTTGTGCGATGTGCGGGAAGCAAGTACTTGACACCAAGCTTTACAAACAAAGTAATGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cript

Protein Analysis

97

Amino Acids

10.82

Weight (kDa)

9.47

Isoelectric Point (pI)

29.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cript PF10235 11 - 95 4.7e-34 Microtubule-associated protein CRIPT
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016188)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G61780
fragaria_vesca FvH4_3g02640
malus_domestica MD05G1341600.v1.1 MD10G1315000.v1.1
prunus_persica Prupe.4G025700_v2.0.a1
pyrus_communis pycom05g31070
rosa_chinensis RchiOBHm_Chr5g0003931
rosa_multiflora Rmu_sc0011733.1_g000001
rosa_roxburghii Rroxscaffold_1G00072040
rosa_rugosa Rorug04G0408000
rosa_samantha Rh5AG035700 Rh5BG034300 Rh5CG038200 Rh5DG034400
rosa_wichuraiana Rw5G003260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 65
AciI CCGC 2 cut(s) 87, 243
AcoI YGGCCR 1 cut(s) 91
AfaI GTAC 2 cut(s) 183, 255
AflIII ACRYGT 1 cut(s) 209
AjnI CCWGG 1 cut(s) 186
AleI CACNNNNGTG 1 cut(s) 210
AluBI AGCT 3 cut(s) 28, 115, 268
AluI AGCT 3 cut(s) 28, 115, 268
AoxI GGCC 1 cut(s) 91
ApeKI GCWGC 1 cut(s) 175
AsuII TTCGAA 1 cut(s) 32
BanI GGYRCC 1 cut(s) 65
BbvI GCAGC 1 cut(s) 187
BccI CCATC 1 cut(s) 185
BciT130I CCWGG 1 cut(s) 188
BisI GCNGC 1 cut(s) 176
BlsI GCNGC 1 cut(s) 177
BmcAI AGTACT 1 cut(s) 255
Bme1390I CCNGG 1 cut(s) 188
BmiI GGNNCC 1 cut(s) 67
BmrFI CCNGG 1 cut(s) 188
BmsI GCATC 1 cut(s) 171
Bpu14I TTCGAA 1 cut(s) 32
Bse1I ACTGG 1 cut(s) 69
BseBI CCWGG 1 cut(s) 188
BseGI GGATG 1 cut(s) 196
BseNI ACTGG 1 cut(s) 69
BseRI GAGGAG 1 cut(s) 107
BseXI GCAGC 1 cut(s) 187
BshFI GGCC 1 cut(s) 93
BshNI GGYRCC 1 cut(s) 65
BsiSI CCGG 2 cut(s) 47, 94
BsnI GGCC 1 cut(s) 93
Bsp119I TTCGAA 1 cut(s) 32
BspACI CCGC 2 cut(s) 87, 243
BspANI GGCC 1 cut(s) 93
BspLI GGNNCC 1 cut(s) 67
BspT104I TTCGAA 1 cut(s) 32
BspT107I GGYRCC 1 cut(s) 65
BsrI ACTGG 1 cut(s) 69
Bst2UI CCWGG 1 cut(s) 188
Bst4CI ACNGT 1 cut(s) 203
BstAPI GCANNNNNTGC 1 cut(s) 168
BstBI TTCGAA 1 cut(s) 32
BstC8I GCNNGC 1 cut(s) 173
BstF5I GGATG 1 cut(s) 196
BstMWI GCNNNNNNNGC 2 cut(s) 15, 168
BstNI CCWGG 1 cut(s) 188
BstNSI RCATGY 1 cut(s) 213
BstSCI CCNGG 1 cut(s) 186
BstV1I GCAGC 1 cut(s) 187
BsuRI GGCC 1 cut(s) 93
BtgZI GCGATG 1 cut(s) 251
BtsCI GGATG 1 cut(s) 196
Cac8I GCNNGC 1 cut(s) 173
Csp6I GTAC 2 cut(s) 182, 254
CviAII CATG 1 cut(s) 210
CviJI RGCY 4 cut(s) 28, 93, 115, 268
CviKI_1 RGCY 4 cut(s) 28, 93, 115, 268
CviQI GTAC 2 cut(s) 182, 254
EaeI YGGCCR 1 cut(s) 91
EcoRII CCWGG 1 cut(s) 186
FaeI CATG 1 cut(s) 213
FaiI YATR 3 cut(s) 41, 211, 289
FatI CATG 1 cut(s) 209
FauI CCCGC 1 cut(s) 236
Fnu4HI GCNGC 1 cut(s) 176
FokI GGATG 1 cut(s) 203
Fsp4HI GCNGC 1 cut(s) 176
GluI GCNGC 1 cut(s) 176
HaeIII GGCC 1 cut(s) 93
HapII CCGG 2 cut(s) 47, 94
Hin1II CATG 1 cut(s) 213
HindIII AAGCTT 2 cut(s) 26, 266
HinfI GANTC 1 cut(s) 139
HpaII CCGG 2 cut(s) 47, 94
Hpy166II GTNNAC 2 cut(s) 138, 184
Hpy8I GTNNAC 2 cut(s) 138, 184
HpyAV CCTTC 3 cut(s) 52, 56, 77
HpyCH4III ACNGT 1 cut(s) 203
HpyCH4V TGCA 2 cut(s) 162, 171
HpyF10VI GCNNNNNNNGC 2 cut(s) 15, 168
Hsp92II CATG 1 cut(s) 213
LmnI GCTCC 1 cut(s) 120
LpnPI CCDG 5 cut(s) 60, 82, 107, 173, 200
Lsp1109I GCAGC 1 cut(s) 187
LweI GCATC 1 cut(s) 171
MaeIII GTNAC 2 cut(s) 71, 203
MboII GAAGA 3 cut(s) 34, 46, 139
MlyI GAGTC 1 cut(s) 133
MnlI CCTC 1 cut(s) 128
MslI CAYNNNNRTG 2 cut(s) 189, 210
MspI CCGG 2 cut(s) 47, 94
MspR9I CCNGG 1 cut(s) 188
MvaI CCWGG 1 cut(s) 188
MwoI GCNNNNNNNGC 2 cut(s) 15, 168
NlaIII CATG 1 cut(s) 213
NlaIV GGNNCC 1 cut(s) 67
NmuCI GTSAC 1 cut(s) 203
NspI RCATGY 1 cut(s) 213
NspV TTCGAA 1 cut(s) 32
OliI CACNNNNGTG 1 cut(s) 210
PciI ACATGT 1 cut(s) 209
PkrI GCNGC 1 cut(s) 177
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
PscI ACATGT 1 cut(s) 209
Psp6I CCWGG 1 cut(s) 186
PspGI CCWGG 1 cut(s) 186
PspN4I GGNNCC 1 cut(s) 67
RsaI GTAC 2 cut(s) 183, 255
RsaNI GTAC 2 cut(s) 182, 254
RseI CAYNNNNRTG 2 cut(s) 189, 210
SatI GCNGC 1 cut(s) 176
ScaI AGTACT 1 cut(s) 255
SchI GAGTC 1 cut(s) 133
ScrFI CCNGG 1 cut(s) 188
SetI ASST 5 cut(s) 30, 67, 117, 137, 270
SfaNI GCATC 1 cut(s) 171
SfuI TTCGAA 1 cut(s) 32
SmiMI CAYNNNNRTG 2 cut(s) 189, 210
SsiI CCGC 2 cut(s) 87, 243
StyD4I CCNGG 1 cut(s) 186
TaaI ACNGT 1 cut(s) 203
TaqI TCGA 1 cut(s) 32
TatI WGTACW 2 cut(s) 181, 253
TseFI GTSAC 1 cut(s) 203
TseI GCWGC 1 cut(s) 175
Tsp45I GTSAC 1 cut(s) 203
TspGWI ACGGA 1 cut(s) 162
XceI RCATGY 1 cut(s) 213
ZrmI AGTACT 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.