Prupe.4G025700_v2.0.a1

Cysteine-rich PDZ-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0016188
Physical Location & Seq
Forward (+)
1208872 .. 1210459
1588 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G025700.1

Sequence Viewer

Length: 291 bp
ATGGTGTGCGAGAAGTGTGAGAAGAAGCTTTCGAAGGTGATAGTGCCAGACAAGTGGAAGGAAGGTGCCAGTAACACCACCGAGGGCGGTGGCCGTAAAATCAACGAGAACAAGCTCCTCTCCAAGAAGAAAAGGTGGACTCCTTATGGAACTACCAAGTGCATGATTTGCAAGCAGCAAGTGCACCAGGATGGAAAATACTGTCACACCTGTGCTTACTCCAAAGGAGTTTGCGCGATGTGCGGTAAGCAAGTACTCGACACCAAGTTATACAAGCAAAGCAATGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cript

Protein Analysis

97

Amino Acids

10.85

Weight (kDa)

9.47

Isoelectric Point (pI)

32.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016188)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G61780
fragaria_vesca FvH4_3g02640
malus_domestica MD05G1341600.v1.1 MD10G1315000.v1.1
prunus_persica Prupe.4G025700_v2.0.a1
pyrus_communis pycom05g31070
rosa_chinensis RchiOBHm_Chr5g0003931
rosa_multiflora Rmu_sc0011733.1_g000001
rosa_roxburghii Rroxscaffold_1G00072040
rosa_rugosa Rorug04G0408000
rosa_samantha Rh5AG035700 Rh5BG034300 Rh5CG038200 Rh5DG034400
rosa_wichuraiana Rw5G003260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 65
AccII CGCG 1 cut(s) 236
AciI CCGC 2 cut(s) 87, 243
AcoI YGGCCR 1 cut(s) 91
AfaI GTAC 1 cut(s) 255
AjnI CCWGG 1 cut(s) 186
AleI CACNNNNGTG 1 cut(s) 210
AluBI AGCT 2 cut(s) 28, 115
AluI AGCT 2 cut(s) 28, 115
Alw21I GWGCWC 1 cut(s) 186
Alw44I GTGCAC 1 cut(s) 182
AoxI GGCC 1 cut(s) 91
ApaLI GTGCAC 1 cut(s) 182
ApeKI GCWGC 1 cut(s) 175
AspLEI GCGC 1 cut(s) 236
AsuHPI GGTGA 1 cut(s) 49
AsuII TTCGAA 1 cut(s) 32
BaeGI GKGCMC 1 cut(s) 186
BanI GGYRCC 1 cut(s) 65
Bbv12I GWGCWC 1 cut(s) 186
BbvI GCAGC 1 cut(s) 187
BccI CCATC 1 cut(s) 185
BceAI ACGGC 1 cut(s) 78
BciT130I CCWGG 1 cut(s) 188
BisI GCNGC 1 cut(s) 176
BlsI GCNGC 1 cut(s) 177
BmcAI AGTACT 1 cut(s) 255
Bme1390I CCNGG 1 cut(s) 188
BmiI GGNNCC 1 cut(s) 67
BmrFI CCNGG 1 cut(s) 188
Bpu14I TTCGAA 1 cut(s) 32
BsaJI CCNNGG 1 cut(s) 81
Bse1I ACTGG 1 cut(s) 69
Bse3DI GCAATG 1 cut(s) 289
BseBI CCWGG 1 cut(s) 188
BseDI CCNNGG 1 cut(s) 81
BseGI GGATG 1 cut(s) 196
BseMI GCAATG 1 cut(s) 289
BseNI ACTGG 1 cut(s) 69
BseRI GAGGAG 1 cut(s) 107
BseSI GKGCMC 1 cut(s) 186
BseXI GCAGC 1 cut(s) 187
Bsh1236I CGCG 1 cut(s) 236
BshFI GGCC 1 cut(s) 93
BshNI GGYRCC 1 cut(s) 65
BsiHKAI GWGCWC 1 cut(s) 186
BsnI GGCC 1 cut(s) 93
Bsp119I TTCGAA 1 cut(s) 32
Bsp1286I GDGCHC 1 cut(s) 186
BspACI CCGC 2 cut(s) 87, 243
BspANI GGCC 1 cut(s) 93
BspFNI CGCG 1 cut(s) 236
BspLI GGNNCC 1 cut(s) 67
BspT104I TTCGAA 1 cut(s) 32
BspT107I GGYRCC 1 cut(s) 65
BsrDI GCAATG 1 cut(s) 289
BsrI ACTGG 1 cut(s) 69
BssECI CCNNGG 1 cut(s) 81
Bst2UI CCWGG 1 cut(s) 188
Bst4CI ACNGT 1 cut(s) 203
BstAPI GCANNNNNTGC 2 cut(s) 168, 181
BstBI TTCGAA 1 cut(s) 32
BstC8I GCNNGC 1 cut(s) 173
BstF5I GGATG 1 cut(s) 196
BstFNI CGCG 1 cut(s) 236
BstHHI GCGC 1 cut(s) 236
BstMWI GCNNNNNNNGC 3 cut(s) 168, 181, 240
BstNI CCWGG 1 cut(s) 188
BstSCI CCNGG 1 cut(s) 186
BstSLI GKGCMC 1 cut(s) 186
BstUI CGCG 1 cut(s) 236
BstV1I GCAGC 1 cut(s) 187
BstXI CCANNNNNNTGG 1 cut(s) 54
BsuRI GGCC 1 cut(s) 93
BtgZI GCGATG 1 cut(s) 251
BtsCI GGATG 1 cut(s) 196
Cac8I GCNNGC 1 cut(s) 173
CfoI GCGC 1 cut(s) 236
Csp6I GTAC 1 cut(s) 254
CviAII CATG 1 cut(s) 163
CviJI RGCY 3 cut(s) 28, 93, 115
CviKI_1 RGCY 3 cut(s) 28, 93, 115
CviQI GTAC 1 cut(s) 254
EaeI YGGCCR 1 cut(s) 91
EcoRII CCWGG 1 cut(s) 186
FaeI CATG 1 cut(s) 166
FaiI YATR 4 cut(s) 147, 164, 271, 289
FatI CATG 1 cut(s) 162
Fnu4HI GCNGC 1 cut(s) 176
FokI GGATG 1 cut(s) 203
Fsp4HI GCNGC 1 cut(s) 176
GlaI GCGC 1 cut(s) 235
GluI GCNGC 1 cut(s) 176
HaeIII GGCC 1 cut(s) 93
HhaI GCGC 1 cut(s) 236
Hin1II CATG 1 cut(s) 166
Hin6I GCGC 1 cut(s) 234
HinP1I GCGC 1 cut(s) 234
HindIII AAGCTT 1 cut(s) 26
HinfI GANTC 1 cut(s) 139
HphI GGTGA 1 cut(s) 49
Hpy166II GTNNAC 2 cut(s) 138, 184
Hpy8I GTNNAC 2 cut(s) 138, 184
HpyAV CCTTC 3 cut(s) 28, 52, 56
HpyCH4III ACNGT 1 cut(s) 203
HpyCH4V TGCA 3 cut(s) 162, 171, 184
HpyF10VI GCNNNNNNNGC 3 cut(s) 168, 181, 240
Hsp92II CATG 1 cut(s) 166
HspAI GCGC 1 cut(s) 234
LmnI GCTCC 1 cut(s) 120
LpnPI CCDG 5 cut(s) 60, 82, 173, 200, 223
Lsp1109I GCAGC 1 cut(s) 187
MaeIII GTNAC 2 cut(s) 71, 203
MboII GAAGA 2 cut(s) 34, 139
MhlI GDGCHC 1 cut(s) 186
MlyI GAGTC 1 cut(s) 133
MnlI CCTC 2 cut(s) 76, 128
MslI CAYNNNNRTG 2 cut(s) 189, 210
MspR9I CCNGG 1 cut(s) 188
MvaI CCWGG 1 cut(s) 188
MvnI CGCG 1 cut(s) 236
MwoI GCNNNNNNNGC 3 cut(s) 168, 181, 240
NlaIII CATG 1 cut(s) 166
NlaIV GGNNCC 1 cut(s) 67
NmuCI GTSAC 1 cut(s) 203
NspV TTCGAA 1 cut(s) 32
OliI CACNNNNGTG 1 cut(s) 210
PkrI GCNGC 1 cut(s) 177
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
Psp6I CCWGG 1 cut(s) 186
PspGI CCWGG 1 cut(s) 186
PspN4I GGNNCC 1 cut(s) 67
RsaI GTAC 1 cut(s) 255
RsaNI GTAC 1 cut(s) 254
RseI CAYNNNNRTG 2 cut(s) 189, 210
SatI GCNGC 1 cut(s) 176
ScaI AGTACT 1 cut(s) 255
SchI GAGTC 1 cut(s) 133
ScrFI CCNGG 1 cut(s) 188
SduI GDGCHC 1 cut(s) 186
SetI ASST 6 cut(s) 30, 39, 67, 117, 137, 212
SfuI TTCGAA 1 cut(s) 32
SmiMI CAYNNNNRTG 2 cut(s) 189, 210
SsiI CCGC 2 cut(s) 87, 243
StyD4I CCNGG 1 cut(s) 186
TaaI ACNGT 1 cut(s) 203
TaqI TCGA 2 cut(s) 32, 258
TatI WGTACW 1 cut(s) 253
TseFI GTSAC 1 cut(s) 203
TseI GCWGC 1 cut(s) 175
Tsp45I GTSAC 1 cut(s) 203
VneI GTGCAC 1 cut(s) 182
ZrmI AGTACT 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.