FvH4_3g02640

Cysteine-rich PDZ-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0016188
Physical Location & Seq
Forward (+)
1334771 .. 1336329
1559 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g02640.t1

Sequence Viewer

Length: 300 bp
ATGGTGTGCGAAAAGTGTGAGAAGAAGCTTGCGAAGGTAATAGTGCCGGACAAGTGGAAGGAGGGTGCCAGTAACACCACCGAAGGCGGCGGCCGGAAAATCAACGAGAATAAGCTCTTGTCCAAGAATAAAAGGTGGAGTCCGTATGGAACTACTGGAAATACCAAGTGTATTATTTGTAAGCAGCAAGTACACCAAGAAGGAAAATACTGCCACACCTGTGCTTACTCCAAAGGAGTTTGTGCGATGTGTGGTAAACAAGTACTCGACACCAAGGTTTACAAACAAAGCAATGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cript

Protein Analysis

100

Amino Acids

11.06

Weight (kDa)

9.41

Isoelectric Point (pI)

33.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cript PF10235 12 - 98 6.6e-35 Microtubule-associated protein CRIPT
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016188)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G61780
fragaria_vesca FvH4_3g02640
malus_domestica MD05G1341600.v1.1 MD10G1315000.v1.1
prunus_persica Prupe.4G025700_v2.0.a1
pyrus_communis pycom05g31070
rosa_chinensis RchiOBHm_Chr5g0003931
rosa_multiflora Rmu_sc0011733.1_g000001
rosa_roxburghii Rroxscaffold_1G00072040
rosa_rugosa Rorug04G0408000
rosa_samantha Rh5AG035700 Rh5BG034300 Rh5CG038200 Rh5DG034400
rosa_wichuraiana Rw5G003260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 65
AciI CCGC 2 cut(s) 87, 90
AcoI YGGCCR 1 cut(s) 91
AfaI GTAC 2 cut(s) 192, 264
AleI CACNNNNGTG 1 cut(s) 219
AluBI AGCT 2 cut(s) 28, 115
AluI AGCT 2 cut(s) 28, 115
AoxI GGCC 1 cut(s) 91
ApeKI GCWGC 1 cut(s) 184
BanI GGYRCC 1 cut(s) 65
BbvI GCAGC 1 cut(s) 196
BisI GCNGC 3 cut(s) 88, 91, 185
BlsI GCNGC 3 cut(s) 89, 92, 186
BmcAI AGTACT 1 cut(s) 264
BmiI GGNNCC 1 cut(s) 67
BsaJI CCNNGG 1 cut(s) 273
Bse1I ACTGG 2 cut(s) 69, 160
Bse3DI GCAATG 1 cut(s) 298
BseDI CCNNGG 1 cut(s) 273
BseMI GCAATG 1 cut(s) 298
BseNI ACTGG 2 cut(s) 69, 160
BseX3I CGGCCG 1 cut(s) 91
BseXI GCAGC 1 cut(s) 196
Bsh1285I CGRYCG 1 cut(s) 94
BshFI GGCC 1 cut(s) 93
BshNI GGYRCC 1 cut(s) 65
BsiEI CGRYCG 1 cut(s) 94
BsiSI CCGG 2 cut(s) 47, 94
BsnI GGCC 1 cut(s) 93
BspACI CCGC 2 cut(s) 87, 90
BspANI GGCC 1 cut(s) 93
BspLI GGNNCC 1 cut(s) 67
BspT107I GGYRCC 1 cut(s) 65
BsrDI GCAATG 1 cut(s) 298
BsrI ACTGG 2 cut(s) 69, 160
BssECI CCNNGG 1 cut(s) 273
BssT1I CCWWGG 1 cut(s) 273
BstC8I GCNNGC 1 cut(s) 30
BstMCI CGRYCG 1 cut(s) 94
BstV1I GCAGC 1 cut(s) 196
BstZI CGGCCG 1 cut(s) 91
BsuRI GGCC 1 cut(s) 93
BtgZI GCGATG 1 cut(s) 260
Cac8I GCNNGC 1 cut(s) 30
Csp6I GTAC 2 cut(s) 191, 263
CviJI RGCY 3 cut(s) 28, 93, 115
CviKI_1 RGCY 3 cut(s) 28, 93, 115
CviQI GTAC 2 cut(s) 191, 263
EaeI YGGCCR 1 cut(s) 91
EagI CGGCCG 1 cut(s) 91
EclXI CGGCCG 1 cut(s) 91
Eco130I CCWWGG 1 cut(s) 273
Eco52I CGGCCG 1 cut(s) 91
EcoT14I CCWWGG 1 cut(s) 273
ErhI CCWWGG 1 cut(s) 273
FaiI YATR 2 cut(s) 147, 298
Fnu4HI GCNGC 3 cut(s) 88, 91, 185
Fsp4HI GCNGC 3 cut(s) 88, 91, 185
GluI GCNGC 3 cut(s) 88, 91, 185
HaeIII GGCC 1 cut(s) 93
HapII CCGG 2 cut(s) 47, 94
HindIII AAGCTT 1 cut(s) 26
HinfI GANTC 1 cut(s) 139
HpaII CCGG 2 cut(s) 47, 94
Hpy166II GTNNAC 3 cut(s) 193, 257, 280
Hpy8I GTNNAC 3 cut(s) 193, 257, 280
HpyAV CCTTC 4 cut(s) 28, 52, 77, 194
LpnPI CCDG 5 cut(s) 60, 82, 107, 141, 232
Lsp1109I GCAGC 1 cut(s) 196
MaeIII GTNAC 1 cut(s) 71
MboII GAAGA 1 cut(s) 34
MlyI GAGTC 1 cut(s) 148
MnlI CCTC 1 cut(s) 55
MslI CAYNNNNRTG 1 cut(s) 219
MspI CCGG 2 cut(s) 47, 94
NlaIV GGNNCC 1 cut(s) 67
OliI CACNNNNGTG 1 cut(s) 219
PkrI GCNGC 3 cut(s) 89, 92, 186
PleI GAGTC 1 cut(s) 147
PpsI GAGTC 1 cut(s) 147
PspN4I GGNNCC 1 cut(s) 67
RsaI GTAC 2 cut(s) 192, 264
RsaNI GTAC 2 cut(s) 191, 263
RseI CAYNNNNRTG 1 cut(s) 219
SatI GCNGC 3 cut(s) 88, 91, 185
ScaI AGTACT 1 cut(s) 264
SchI GAGTC 1 cut(s) 148
SetI ASST 6 cut(s) 30, 39, 117, 137, 221, 279
SmiMI CAYNNNNRTG 1 cut(s) 219
SsiI CCGC 2 cut(s) 87, 90
StyI CCWWGG 1 cut(s) 273
TaqI TCGA 1 cut(s) 267
TatI WGTACW 2 cut(s) 190, 262
TauI GCSGC 2 cut(s) 90, 93
TseI GCWGC 1 cut(s) 184
TspGWI ACGGA 1 cut(s) 132
ZrmI AGTACT 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.