AT1G62780

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013217
Physical Location & Seq
Reverse (-)
23249145 .. 23251195
2051 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G62780.1

Sequence Viewer

Length: 714 bp
ATGGCTACGCTTTCGTTTGGAATCGCCGCCGCTGCAACCACCGTCCGTACGATTCCGAGATTTAATTCACGGAGGAGCAAAATCACATGCGAATGGGATCCGAAAGGTGTGTTGGGTCCGGCTCAAACTGGTCATATAGCTCGGCTTGAGTTTAAGCGTCGGCTAGAGAGAGATTCAGAGGCAAGAGAAGCTTTTCAGAAACAACTTCGTGAAGAGAAAGAGCGTCGTCAAGCTCTTAGACAATCTAGAGTTGTACCGGATACTGCTGCGGAGCTGATTGAGTACTTTCTTGATACTGAAGCTCAGGAGATTGAGTATGAGATCGCTAGGCTTAGAGGAAGGTTAAACGACGAATTCTTTGCGCAGATACGACTTGAAATCGGACAGATTCGATTTGCTGTTACTAAGACTGCGGATATTGAAGATAGATTGATTGAGCTTGAAACACTTCAAAAAGCTTTAGAAGAAGGAATAGAGGCTTATGACAAAATGCAAAATGAGCTTATGACGGCTACAAATAGCTTAACCAAACTCTTAACCTCAACCGATATAAAAACCACATTGTTGGATATGGTGGAGAAAAACCAAATCAACAGATCTTTGTTGGCACTTCTCGACGAAAACATAGCCAATGCATACAAAGGAAACCAGAAAGAAGCAGGAGATTACATGGAGAAGATACGCTCTTCAGTTCTTAAGTATTTGACAGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

237

Amino Acids

27.22

Weight (kDa)

5.78

Isoelectric Point (pI)

52.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013217)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62780
fragaria_vesca FvH4_5g00440 FvH4_5g00440 FvH4_5g00440
malus_domestica MD04G1081100.v1.1
prunus_persica Prupe.5G077000_v2.0.a1
pyrus_communis pycom04g07320
rosa_chinensis RchiOBHm_Chr7g0202061
rosa_laevigata RLG00000003628
rosa_multiflora Rmu_sc0006592.1_g000010 Rmu_sc0010587.1_g000002
rosa_roxburghii Rroxscaffold_3G00254890
rosa_rugosa Rorug07G0067700
rosa_samantha Rh7AG195100 Rh7BG196500 Rh7CG206300 Rh7DG201700
rosa_wichuraiana Rw7G017090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 363
AciI CCGC 4 cut(s) 27, 30, 269, 413
AclWI GGATC 2 cut(s) 92, 105
AcsI RAATTY 1 cut(s) 353
AcuI CTGAAG 2 cut(s) 318, 672
AfaI GTAC 3 cut(s) 49, 255, 284
AflII CTTAAG 1 cut(s) 695
AgsI TTSAA 4 cut(s) 377, 422, 443, 452
AjuI GAANNNNNNNTTGG 2 cut(s) 95, 127
AluBI AGCT 9 cut(s) 140, 191, 233, 274, 302, 439, 458, 502, 522
AluI AGCT 9 cut(s) 140, 191, 233, 274, 302, 439, 458, 502, 522
AlwI GGATC 2 cut(s) 92, 105
ApeKI GCWGC 2 cut(s) 32, 266
ApoI RAATTY 1 cut(s) 353
ArsI GACNNNNNNTTYG 2 cut(s) 341, 373
Asp700I GAANNNNTTC 2 cut(s) 192, 447
AspLEI GCGC 1 cut(s) 364
AspS9I GGNCC 1 cut(s) 116
AvaII GGWCC 1 cut(s) 116
BamHI GGATCC 1 cut(s) 97
BbvI GCAGC 2 cut(s) 19, 253
BceAI ACGGC 1 cut(s) 525
BcgI CGANNNNNNTGC 2 cut(s) 341, 375
BciVI GTATCC 1 cut(s) 253
BfaI CTAG 3 cut(s) 164, 246, 327
BfrI CTTAAG 1 cut(s) 695
BfuI GTATCC 1 cut(s) 253
BglII AGATCT 1 cut(s) 596
BisI GCNGC 4 cut(s) 27, 30, 33, 267
BlsI GCNGC 4 cut(s) 28, 31, 34, 268
BmcAI AGTACT 1 cut(s) 284
Bme18I GGWCC 1 cut(s) 116
BmgT120I GGNCC 1 cut(s) 116
BmiI GGNNCC 2 cut(s) 99, 117
Bpu10I CCTNAGC 1 cut(s) 303
BpuEI CTTGAG 1 cut(s) 167
BsaWI WCCGGW 1 cut(s) 256
BsaXI ACNNNNNCTCC 2 cut(s) 299, 329
Bse1I ACTGG 1 cut(s) 133
BseMII CTCAG 1 cut(s) 317
BseNI ACTGG 1 cut(s) 133
BseRI GAGGAG 1 cut(s) 88
BseXI GCAGC 2 cut(s) 19, 253
BsiSI CCGG 2 cut(s) 119, 257
BsiWI CGTACG 1 cut(s) 47
Bsp143I GATC 3 cut(s) 97, 321, 596
BspACI CCGC 4 cut(s) 27, 30, 269, 413
BspCNI CTCAG 1 cut(s) 316
BspLI GGNNCC 2 cut(s) 99, 117
BspPI GGATC 2 cut(s) 92, 105
BspQI GCTCTTC 1 cut(s) 691
BspTI CTTAAG 1 cut(s) 695
BsrI ACTGG 1 cut(s) 133
BssMI GATC 3 cut(s) 97, 321, 596
Bst4CI ACNGT 2 cut(s) 43, 709
Bst6I CTCTTC 2 cut(s) 207, 691
BstAFI CTTAAG 1 cut(s) 695
BstDEI CTNAG 4 cut(s) 236, 303, 332, 405
BstHHI GCGC 1 cut(s) 364
BstKTI GATC 3 cut(s) 100, 324, 599
BstMBI GATC 3 cut(s) 97, 321, 596
BstMWI GCNNNNNNNGC 3 cut(s) 32, 188, 499
BstNSI RCATGY 1 cut(s) 90
BstV1I GCAGC 2 cut(s) 19, 253
BstX2I RGATCY 2 cut(s) 97, 596
BstXI CCANNNNNNTGG 1 cut(s) 565
BstYI RGATCY 2 cut(s) 97, 596
BsuI GTATCC 1 cut(s) 253
BtsIMutI CAGTG 1 cut(s) 714
CfoI GCGC 1 cut(s) 364
Cfr13I GGNCC 1 cut(s) 116
CseI GACGC 2 cut(s) 146, 212
Csp6I GTAC 3 cut(s) 48, 254, 283
CviAII CATG 2 cut(s) 87, 670
CviQI GTAC 3 cut(s) 48, 254, 283
DdeI CTNAG 4 cut(s) 236, 303, 332, 405
DpnI GATC 3 cut(s) 99, 323, 598
DpnII GATC 3 cut(s) 97, 321, 596
Eam1104I CTCTTC 2 cut(s) 207, 691
EarI CTCTTC 2 cut(s) 207, 691
Eco47I GGWCC 1 cut(s) 116
Eco57I CTGAAG 2 cut(s) 318, 672
EcoRI GAATTC 1 cut(s) 353
EcoT22I ATGCAT 1 cut(s) 637
FaeI CATG 2 cut(s) 90, 673
FalI AAGNNNNNCTT 2 cut(s) 175, 207
FatI CATG 2 cut(s) 86, 669
Fnu4HI GCNGC 4 cut(s) 27, 30, 33, 267
Fsp4HI GCNGC 4 cut(s) 27, 30, 33, 267
FspBI CTAG 3 cut(s) 164, 246, 327
FspI TGCGCA 1 cut(s) 363
GlaI GCGC 1 cut(s) 363
GluI GCNGC 4 cut(s) 27, 30, 33, 267
HapII CCGG 2 cut(s) 119, 257
HgaI GACGC 2 cut(s) 146, 212
HhaI GCGC 1 cut(s) 364
Hin1II CATG 2 cut(s) 90, 673
Hin6I GCGC 1 cut(s) 362
HinP1I GCGC 1 cut(s) 362
HindIII AAGCTT 2 cut(s) 189, 456
HinfI GANTC 4 cut(s) 21, 52, 173, 388
HpaII CCGG 2 cut(s) 119, 257
Hpy188I TCNGA 5 cut(s) 57, 102, 178, 198, 383
Hpy188III TCNNGA 5 cut(s) 209, 246, 290, 305, 614
Hpy99I CGWCG 4 cut(s) 162, 228, 353, 620
HpyAV CCTTC 2 cut(s) 333, 461
HpyCH4III ACNGT 2 cut(s) 43, 709
HpyCH4V TGCA 3 cut(s) 35, 493, 635
HpyF10VI GCNNNNNNNGC 3 cut(s) 32, 188, 499
HpyF3I CTNAG 4 cut(s) 236, 303, 332, 405
Hsp92II CATG 2 cut(s) 90, 673
HspAI GCGC 1 cut(s) 362
Kzo9I GATC 3 cut(s) 97, 321, 596
LguI GCTCTTC 1 cut(s) 691
LmnI GCTCC 2 cut(s) 75, 271
LpnPI CCDG 6 cut(s) 114, 132, 270, 290, 645, 662
Lsp1109I GCAGC 2 cut(s) 19, 253
MaeI CTAG 3 cut(s) 164, 246, 327
MaeIII GTNAC 1 cut(s) 400
MalI GATC 3 cut(s) 99, 323, 598
MboI GATC 3 cut(s) 97, 321, 596
MboII GAAGA 5 cut(s) 224, 434, 476, 678, 688
MflI RGATCY 2 cut(s) 97, 596
MluCI AATT 2 cut(s) 64, 353
MmeI TCCRAC 1 cut(s) 546
MnlI CCTC 5 cut(s) 66, 172, 329, 469, 550
Mph1103I ATGCAT 1 cut(s) 637
MroXI GAANNNNTTC 2 cut(s) 192, 447
MseI TTAA 6 cut(s) 63, 153, 344, 524, 536, 696
MslI CAYNNNNRTG 1 cut(s) 91
MspA1I CMGCKG 1 cut(s) 32
MspCI CTTAAG 1 cut(s) 695
MspI CCGG 2 cut(s) 119, 257
MwoI GCNNNNNNNGC 3 cut(s) 32, 188, 499
NdeII GATC 3 cut(s) 97, 321, 596
NlaIII CATG 2 cut(s) 90, 673
NlaIV GGNNCC 2 cut(s) 99, 117
NmeAIII GCCGAG 1 cut(s) 121
NsbI TGCGCA 1 cut(s) 363
NsiI ATGCAT 1 cut(s) 637
NspI RCATGY 1 cut(s) 90
PciSI GCTCTTC 1 cut(s) 691
PdmI GAANNNNTTC 2 cut(s) 192, 447
PfeI GAWTC 4 cut(s) 21, 52, 173, 388
Pfl23II CGTACG 1 cut(s) 47
PkrI GCNGC 4 cut(s) 28, 31, 34, 268
PspLI CGTACG 1 cut(s) 47
PspN4I GGNNCC 2 cut(s) 99, 117
PspPI GGNCC 1 cut(s) 116
PsuI RGATCY 2 cut(s) 97, 596
RsaI GTAC 3 cut(s) 49, 255, 284
RsaNI GTAC 3 cut(s) 48, 254, 283
RseI CAYNNNNRTG 1 cut(s) 91
SapI GCTCTTC 1 cut(s) 691
SaqAI TTAA 6 cut(s) 63, 153, 344, 524, 536, 696
SatI GCNGC 4 cut(s) 27, 30, 33, 267
Sau3AI GATC 3 cut(s) 97, 321, 596
Sau96I GGNCC 1 cut(s) 116
ScaI AGTACT 1 cut(s) 284
SinI GGWCC 1 cut(s) 116
SmiMI CAYNNNNRTG 1 cut(s) 91
SmlI CTYRAG 2 cut(s) 146, 695
SmoI CTYRAG 2 cut(s) 146, 695
Sse9I AATT 2 cut(s) 64, 353
SsiI CCGC 4 cut(s) 27, 30, 269, 413
SspMI CTAG 3 cut(s) 164, 246, 327
TaaI ACNGT 2 cut(s) 43, 709
TaqI TCGA 2 cut(s) 391, 615
TasI AATT 2 cut(s) 64, 353
TatI WGTACW 1 cut(s) 282
TauI GCSGC 2 cut(s) 29, 32
TfiI GAWTC 4 cut(s) 21, 52, 173, 388
Tru1I TTAA 6 cut(s) 63, 153, 344, 524, 536, 696
Tru9I TTAA 6 cut(s) 63, 153, 344, 524, 536, 696
TscAI CASTG 1 cut(s) 714
TseI GCWGC 2 cut(s) 32, 266
TspGWI ACGGA 2 cut(s) 35, 85
TspRI CASTG 1 cut(s) 714
Vha464I CTTAAG 1 cut(s) 695
VpaK11BI GGWCC 1 cut(s) 116
XapI RAATTY 1 cut(s) 353
XbaI TCTAGA 1 cut(s) 245
XceI RCATGY 1 cut(s) 90
XmnI GAANNNNTTC 2 cut(s) 192, 447
XspI CTAG 3 cut(s) 164, 246, 327
ZrmI AGTACT 1 cut(s) 284
Zsp2I ATGCAT 1 cut(s) 637
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.