FvH4_5g00440

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0013217
Physical Location & Seq
Reverse (-)
290120 .. 292395
2276 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g00440.t2

Sequence Viewer

Length: 720 bp
ATGGCAGCTCTAAGCATTGGCATCGCCACCACAAGCTCCGCCTTTCTTTCAAGGCCCACTCCCCGCCGTCTCAGGCCCACTAGGATTGCCTGCGTCACATGGGATCCAGAAGGTATACTCGGGCCGGCGCAGACGGGCCACATAGCCCGGAAAGAGTTCCAGAGACGGCTGGAGAAGGACTCCGATGCTCGAGAGGCGTTTGAGCGCCAAGTTATTGAAGAGAAAGAGCGCCGTCGAGCTGTTAGAGAATCTCGGGTAGCTCCAGACACTGCAGAGGGGTTGATCGAGTATTTCCTTGATACTGAAGCTAGGGAGATTGAGTTCGAGATTTCCAGGTTGAGGCCAAGATTGAACAAGGAATTTTTCTCGCACCTACAATTTGAGATTGGTCAGCTACGGTTTGCGGTTTCAAAAACTCAGGATGTAGAAGATAGGCTGATTGAGCTGGAAGCACTGCAGAAAGCGCTTCAGGAAGGAACAGAAGCGTATGATAAAATGCAAATTGACCTCGTTAAAGCCAAAGAAAGTCTGACCAAAATCTTGTCATCAAAGAATATCAAAGAAACTTTACTGGGGATGGTTGAAACCAACGAACTTAATAGATCCTTGTTGACAATTCTTGATGAAAACATAGCAAGTGCACAGCAGGGTGACCAGAAGCAAGCGGCTGAGTTCATGGAAAAGCTACGTGGAGCTGTCCTCAAGTACATGACAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

240

Amino Acids

27.32

Weight (kDa)

5.94

Isoelectric Point (pI)

63.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013217)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62780
fragaria_vesca FvH4_5g00440 FvH4_5g00440 FvH4_5g00440
malus_domestica MD04G1081100.v1.1
prunus_persica Prupe.5G077000_v2.0.a1
pyrus_communis pycom04g07320
rosa_chinensis RchiOBHm_Chr7g0202061
rosa_laevigata RLG00000003628
rosa_multiflora Rmu_sc0006592.1_g000010 Rmu_sc0010587.1_g000002
rosa_roxburghii Rroxscaffold_3G00254890
rosa_rugosa Rorug07G0067700
rosa_samantha Rh7AG195100 Rh7BG196500 Rh7CG206300 Rh7DG201700
rosa_wichuraiana Rw7G017090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 115
AciI CCGC 4 cut(s) 39, 64, 404, 665
AclWI GGATC 3 cut(s) 98, 111, 597
AcsI RAATTY 1 cut(s) 359
AcuI CTGAAG 2 cut(s) 324, 452
AfaI GTAC 1 cut(s) 707
AfeI AGCGCT 1 cut(s) 465
AfiI CCNNNNNNNGG 1 cut(s) 339
AgsI TTSAA 5 cut(s) 51, 218, 352, 411, 584
AjnI CCWGG 1 cut(s) 332
AloI GAACNNNNNNTCC 2 cut(s) 305, 337
AluBI AGCT 9 cut(s) 8, 36, 239, 260, 308, 394, 445, 685, 695
AluI AGCT 9 cut(s) 8, 36, 239, 260, 308, 394, 445, 685, 695
Alw21I GWGCWC 1 cut(s) 643
Alw26I GTCTC 2 cut(s) 74, 157
Alw44I GTGCAC 1 cut(s) 639
AlwI GGATC 3 cut(s) 98, 111, 597
AlwNI CAGNNNCTG 1 cut(s) 269
Ama87I CYCGRG 3 cut(s) 119, 189, 252
Aor51HI AGCGCT 1 cut(s) 465
AoxI GGCC 5 cut(s) 53, 74, 122, 136, 341
ApaLI GTGCAC 1 cut(s) 639
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 1 cut(s) 359
Asp700I GAANNNNTTC 1 cut(s) 155
AspLEI GCGC 4 cut(s) 130, 207, 231, 466
AspS9I GGNCC 4 cut(s) 54, 75, 122, 136
AsuC2I CCSGG 1 cut(s) 148
AsuHPI GGTGA 1 cut(s) 662
AvaI CYCGRG 3 cut(s) 119, 189, 252
BaeGI GKGCMC 1 cut(s) 643
BamHI GGATCC 1 cut(s) 103
Bbv12I GWGCWC 1 cut(s) 643
BbvI GCAGC 1 cut(s) 17
BccI CCATC 1 cut(s) 571
BceAI ACGGC 3 cut(s) 51, 182, 216
BcgI CGANNNNNNTGC 2 cut(s) 4, 38
BciT130I CCWGG 1 cut(s) 334
BcnI CCSGG 1 cut(s) 148
BcoDI GTCTC 2 cut(s) 74, 157
BfaI CTAG 2 cut(s) 81, 309
BfmI CTRYAG 2 cut(s) 270, 455
BfoI RGCGCY 3 cut(s) 208, 232, 467
BisI GCNGC 2 cut(s) 6, 666
BlsI GCNGC 2 cut(s) 7, 667
Bme1390I CCNGG 2 cut(s) 148, 334
BmeT110I CYCGRG 3 cut(s) 119, 189, 252
BmgT120I GGNCC 4 cut(s) 54, 75, 122, 136
BmiI GGNNCC 1 cut(s) 105
BmrFI CCNGG 2 cut(s) 148, 334
BmrI ACTGGG 1 cut(s) 581
BmsI GCATC 2 cut(s) 30, 175
BmuI ACTGGG 1 cut(s) 581
BplI GAGNNNNNCTC 4 cut(s) 164, 196, 684, 716
BpmI CTGGAG 2 cut(s) 191, 246
BpuEI CTTGAG 1 cut(s) 686
BpuMI CCSGG 1 cut(s) 148
BsaAI YACGTR 1 cut(s) 689
BsaXI ACNNNNNCTCC 2 cut(s) 305, 335
Bsc4I CCNNNNNNNGG 1 cut(s) 339
Bse118I RCCGGY 1 cut(s) 124
Bse1I ACTGG 1 cut(s) 576
BseBI CCWGG 1 cut(s) 334
BseGI GGATG 2 cut(s) 427, 582
BseLI CCNNNNNNNGG 1 cut(s) 339
BseMII CTCAG 3 cut(s) 85, 431, 660
BseNI ACTGG 1 cut(s) 576
BseSI GKGCMC 1 cut(s) 643
BseXI GCAGC 1 cut(s) 17
BshFI GGCC 5 cut(s) 55, 76, 124, 138, 343
BsiHKAI GWGCWC 1 cut(s) 643
BsiHKCI CYCGRG 3 cut(s) 119, 189, 252
BsiSI CCGG 2 cut(s) 125, 148
BslI CCNNNNNNNGG 1 cut(s) 339
BsmAI GTCTC 2 cut(s) 74, 157
BsmBI CGTCTC 2 cut(s) 74, 157
BsnI GGCC 5 cut(s) 55, 76, 124, 138, 343
BsoBI CYCGRG 3 cut(s) 119, 189, 252
Bsp1286I GDGCHC 1 cut(s) 643
Bsp143I GATC 3 cut(s) 103, 282, 602
BspACI CCGC 4 cut(s) 39, 64, 404, 665
BspANI GGCC 5 cut(s) 55, 76, 124, 138, 343
BspCNI CTCAG 3 cut(s) 84, 430, 661
BspLI GGNNCC 1 cut(s) 105
BspMAI CTGCAG 2 cut(s) 274, 459
BspPI GGATC 3 cut(s) 98, 111, 597
BsrFI RCCGGY 1 cut(s) 124
BsrI ACTGG 1 cut(s) 576
BssAI RCCGGY 1 cut(s) 124
BssMI GATC 3 cut(s) 103, 282, 602
BssNAI GTATAC 1 cut(s) 116
Bst1107I GTATAC 1 cut(s) 116
Bst2UI CCWGG 1 cut(s) 334
Bst4CI ACNGT 2 cut(s) 399, 715
Bst6I CTCTTC 1 cut(s) 213
BstBAI YACGTR 1 cut(s) 689
BstC8I GCNNGC 3 cut(s) 91, 126, 663
BstDEI CTNAG 4 cut(s) 11, 71, 417, 669
BstEII GGTNACC 1 cut(s) 650
BstF5I GGATG 2 cut(s) 427, 582
BstH2I RGCGCY 3 cut(s) 208, 232, 467
BstHHI GCGC 4 cut(s) 130, 207, 231, 466
BstKTI GATC 3 cut(s) 106, 285, 605
BstMAI GTCTC 2 cut(s) 74, 157
BstMBI GATC 3 cut(s) 103, 282, 602
BstMWI GCNNNNNNNGC 3 cut(s) 194, 442, 463
BstNI CCWGG 1 cut(s) 334
BstPI GGTNACC 1 cut(s) 650
BstSCI CCNGG 2 cut(s) 146, 332
BstSFI CTRYAG 2 cut(s) 270, 455
BstSLI GKGCMC 1 cut(s) 643
BstV1I GCAGC 1 cut(s) 17
BstX2I RGATCY 2 cut(s) 103, 602
BstYI RGATCY 2 cut(s) 103, 602
BstZ17I GTATAC 1 cut(s) 116
BsuRI GGCC 5 cut(s) 55, 76, 124, 138, 343
BtgZI GCGATG 1 cut(s) 7
BtsCI GGATG 2 cut(s) 427, 582
BtsI GCAGTG 2 cut(s) 267, 452
BtsIMutI CAGTG 2 cut(s) 267, 452
Cac8I GCNNGC 3 cut(s) 91, 126, 663
CaiI CAGNNNCTG 1 cut(s) 269
CfoI GCGC 4 cut(s) 130, 207, 231, 466
Cfr10I RCCGGY 1 cut(s) 124
Cfr13I GGNCC 4 cut(s) 54, 75, 122, 136
CseI GACGC 1 cut(s) 82
Csp6I GTAC 1 cut(s) 706
CspCI CAANNNNNGTGG 2 cut(s) 67, 102
CviAII CATG 3 cut(s) 99, 676, 709
CviQI GTAC 1 cut(s) 706
DdeI CTNAG 4 cut(s) 11, 71, 417, 669
DpnI GATC 3 cut(s) 105, 284, 604
DpnII GATC 3 cut(s) 103, 282, 602
Eam1104I CTCTTC 1 cut(s) 213
EarI CTCTTC 1 cut(s) 213
EciI GGCGGA 1 cut(s) 28
Eco47III AGCGCT 1 cut(s) 465
Eco57I CTGAAG 2 cut(s) 324, 452
Eco88I CYCGRG 3 cut(s) 119, 189, 252
Eco91I GGTNACC 1 cut(s) 650
EcoO65I GGTNACC 1 cut(s) 650
EcoRII CCWGG 1 cut(s) 332
Esp3I CGTCTC 2 cut(s) 74, 157
FaeI CATG 3 cut(s) 102, 679, 712
FaiI YATR 7 cut(s) 100, 116, 143, 489, 632, 677, 710
FatI CATG 3 cut(s) 98, 675, 708
FauI CCCGC 1 cut(s) 71
FblI GTMKAC 1 cut(s) 115
Fnu4HI GCNGC 2 cut(s) 6, 666
FokI GGATG 2 cut(s) 434, 589
Fsp4HI GCNGC 2 cut(s) 6, 666
FspBI CTAG 2 cut(s) 81, 309
GlaI GCGC 4 cut(s) 129, 206, 230, 465
GluI GCNGC 2 cut(s) 6, 666
GsuI CTGGAG 2 cut(s) 191, 246
HaeII RGCGCY 3 cut(s) 208, 232, 467
HaeIII GGCC 5 cut(s) 55, 76, 124, 138, 343
HapII CCGG 2 cut(s) 125, 148
HgaI GACGC 1 cut(s) 82
HhaI GCGC 4 cut(s) 130, 207, 231, 466
Hin1II CATG 3 cut(s) 102, 679, 712
Hin6I GCGC 4 cut(s) 128, 205, 229, 464
HinP1I GCGC 4 cut(s) 128, 205, 229, 464
HincII GTYRAC 1 cut(s) 612
HindII GTYRAC 1 cut(s) 612
HinfI GANTC 2 cut(s) 179, 248
HpaII CCGG 2 cut(s) 125, 148
HphI GGTGA 1 cut(s) 662
Hpy166II GTNNAC 3 cut(s) 116, 612, 641
Hpy188I TCNGA 2 cut(s) 184, 531
Hpy188III TCNNGA 8 cut(s) 107, 160, 191, 263, 325, 419, 470, 620
Hpy8I GTNNAC 3 cut(s) 116, 612, 641
Hpy99I CGWCG 1 cut(s) 237
HpyAV CCTTC 3 cut(s) 104, 169, 467
HpyCH4III ACNGT 2 cut(s) 399, 715
HpyCH4IV ACGT 1 cut(s) 688
HpyCH4V TGCA 4 cut(s) 272, 457, 499, 641
HpyF10VI GCNNNNNNNGC 3 cut(s) 194, 442, 463
HpyF3I CTNAG 4 cut(s) 11, 71, 417, 669
HpySE526I ACGT 1 cut(s) 688
Hsp92II CATG 3 cut(s) 102, 679, 712
HspAI GCGC 4 cut(s) 128, 205, 229, 464
KroI GCCGGC 1 cut(s) 124
KroNI GCCGGC 1 cut(s) 126
Kzo9I GATC 3 cut(s) 103, 282, 602
LmnI GCTCC 3 cut(s) 41, 265, 692
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 2 cut(s) 30, 175
MaeI CTAG 2 cut(s) 81, 309
MaeII ACGT 1 cut(s) 688
MaeIII GTNAC 2 cut(s) 94, 650
MalI GATC 3 cut(s) 105, 284, 604
MboI GATC 3 cut(s) 103, 282, 602
MboII GAAGA 2 cut(s) 230, 440
MflI RGATCY 2 cut(s) 103, 602
MhlI GDGCHC 1 cut(s) 643
MluCI AATT 4 cut(s) 359, 377, 501, 615
MlyI GAGTC 1 cut(s) 173
MnlI CCTC 5 cut(s) 187, 268, 333, 518, 710
MroNI GCCGGC 1 cut(s) 124
MroXI GAANNNNTTC 1 cut(s) 155
MseI TTAA 2 cut(s) 513, 597
MspI CCGG 2 cut(s) 125, 148
MspR9I CCNGG 2 cut(s) 148, 334
MvaI CCWGG 1 cut(s) 334
MwoI GCNNNNNNNGC 3 cut(s) 194, 442, 463
NaeI GCCGGC 1 cut(s) 126
NciI CCSGG 1 cut(s) 148
NdeII GATC 3 cut(s) 103, 282, 602
NgoMIV GCCGGC 1 cut(s) 124
NlaIII CATG 3 cut(s) 102, 679, 712
NlaIV GGNNCC 1 cut(s) 105
NmuCI GTSAC 2 cut(s) 94, 650
PaeR7I CTCGAG 1 cut(s) 189
PdiI GCCGGC 1 cut(s) 126
PdmI GAANNNNTTC 1 cut(s) 155
PfeI GAWTC 1 cut(s) 248
PkrI GCNGC 2 cut(s) 7, 667
PleI GAGTC 1 cut(s) 173
PpsI GAGTC 1 cut(s) 173
Ppu21I YACGTR 1 cut(s) 689
Psp6I CCWGG 1 cut(s) 332
PspEI GGTNACC 1 cut(s) 650
PspGI CCWGG 1 cut(s) 332
PspN4I GGNNCC 1 cut(s) 105
PspPI GGNCC 4 cut(s) 54, 75, 122, 136
PstI CTGCAG 2 cut(s) 274, 459
PstNI CAGNNNCTG 1 cut(s) 269
PsuI RGATCY 2 cut(s) 103, 602
RsaI GTAC 1 cut(s) 707
RsaNI GTAC 1 cut(s) 706
SaqAI TTAA 2 cut(s) 513, 597
SatI GCNGC 2 cut(s) 6, 666
Sau3AI GATC 3 cut(s) 103, 282, 602
Sau96I GGNCC 4 cut(s) 54, 75, 122, 136
SchI GAGTC 1 cut(s) 173
ScrFI CCNGG 2 cut(s) 148, 334
SduI GDGCHC 1 cut(s) 643
SfaNI GCATC 2 cut(s) 30, 175
SfcI CTRYAG 2 cut(s) 270, 455
Sfr274I CTCGAG 1 cut(s) 189
SlaI CTCGAG 1 cut(s) 189
SmlI CTYRAG 2 cut(s) 189, 701
SmoI CTYRAG 2 cut(s) 189, 701
Sse9I AATT 4 cut(s) 359, 377, 501, 615
SsiI CCGC 4 cut(s) 39, 64, 404, 665
SspMI CTAG 2 cut(s) 81, 309
StyD4I CCNGG 2 cut(s) 146, 332
TaaI ACNGT 2 cut(s) 399, 715
TaiI ACGT 1 cut(s) 691
TaqI TCGA 4 cut(s) 190, 235, 285, 324
TasI AATT 4 cut(s) 359, 377, 501, 615
TatI WGTACW 1 cut(s) 705
TauI GCSGC 1 cut(s) 668
TfiI GAWTC 1 cut(s) 248
Tru1I TTAA 2 cut(s) 513, 597
Tru9I TTAA 2 cut(s) 513, 597
TscAI CASTG 2 cut(s) 274, 459
TseFI GTSAC 2 cut(s) 94, 650
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 2 cut(s) 94, 650
TspDTI ATGAA 2 cut(s) 639, 664
TspRI CASTG 2 cut(s) 274, 459
VneI GTGCAC 1 cut(s) 639
XapI RAATTY 1 cut(s) 359
XhoI CTCGAG 1 cut(s) 189
XmiI GTMKAC 1 cut(s) 115
XmnI GAANNNNTTC 1 cut(s) 155
XspI CTAG 2 cut(s) 81, 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.