Rh7BG196500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0013217
Physical Location & Seq
Forward (+)
16115055 .. 16116958
1904 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG196500.1

Sequence Viewer

Length: 723 bp
ATGGCAGCTCTAAGCATTGGCATCGCCACCACCACCAGCTCCGCCTTACTTTCAAAGCCGACACTCCGCCGTTTCAGGCCCACAAGGATTTCCTGCGTCGCCTGGGATCCAGAAGGTATACTCGGGCCGCCGCAGACCGGCCACATAGCCCGAAAAGAGTTCCAGAGACGGCTCGAAAAGGACTCCGATGCTCGAGAAGCCTTCGAGCGCCAAGTCATTGAAGAAAAAGAGCGCCGTCGAGCTGTCAGAGAATCTCGAGTAGCTCCAGATACTGCGGAGGGGTTGATCGAGTACTTTCTTGATACTGAAGCTAGGGAGATTGAGTTCGAGATTTCGAGGTTGAGGCCAAGATTGAACAAGGAATTTTTCTCGCACCTAAAATTTGAGATAGGTCAGCTACGGTTTGCGGTTTCAAAAACTCAGGATATGGAAGATAGGTTGATTGAGCTGGAAGCATTGCAGAAAGCCCTGCAGGAAGGAACAGAAGCGTATGATAAAATGCAAATTGACCTCATTAAAGCCAAGGAAAGTCTGACCAAAATCTTGTCATCAAAGAATATCAAAGAAACTTTACTGGAGATGGTTGAAAGCAACGAACTTAATAGATCCTTGTTGACAATTCTTGATGAAAACATAGCAAGTGCACAGCAGGGTAACCAGAAGCAAGCAGCAGACTTCATGGAAAAGCTTCGTGGAGCTGTTCTCAAGTACATGACAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

240

Amino Acids

27.52

Weight (kDa)

6.28

Isoelectric Point (pI)

61.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013217)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62780
fragaria_vesca FvH4_5g00440 FvH4_5g00440 FvH4_5g00440
malus_domestica MD04G1081100.v1.1
prunus_persica Prupe.5G077000_v2.0.a1
pyrus_communis pycom04g07320
rosa_chinensis RchiOBHm_Chr7g0202061
rosa_laevigata RLG00000003628
rosa_multiflora Rmu_sc0006592.1_g000010 Rmu_sc0010587.1_g000002
rosa_roxburghii Rroxscaffold_3G00254890
rosa_rugosa Rorug07G0067700
rosa_samantha Rh7AG195100 Rh7BG196500 Rh7CG206300 Rh7DG201700
rosa_wichuraiana Rw7G017090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 118
AciI CCGC 6 cut(s) 42, 67, 128, 131, 275, 407
AclWI GGATC 3 cut(s) 101, 114, 600
AcoI YGGCCR 1 cut(s) 139
AcsI RAATTY 2 cut(s) 362, 380
AcuI CTGAAG 1 cut(s) 327
AfaI GTAC 2 cut(s) 293, 710
AfiI CCNNNNNNNGG 1 cut(s) 137
AgsI TTSAA 5 cut(s) 54, 221, 355, 414, 587
AjnI CCWGG 1 cut(s) 101
AloI GAACNNNNNNTCC 2 cut(s) 308, 340
AluBI AGCT 9 cut(s) 8, 39, 242, 263, 311, 397, 448, 688, 698
AluI AGCT 9 cut(s) 8, 39, 242, 263, 311, 397, 448, 688, 698
Alw21I GWGCWC 1 cut(s) 646
Alw26I GTCTC 1 cut(s) 160
Alw44I GTGCAC 1 cut(s) 642
AlwI GGATC 3 cut(s) 101, 114, 600
AlwNI CAGNNNCTG 1 cut(s) 272
Ama87I CYCGRG 3 cut(s) 122, 192, 255
AoxI GGCC 4 cut(s) 77, 125, 139, 344
ApaLI GTGCAC 1 cut(s) 642
ApeKI GCWGC 2 cut(s) 5, 668
ApoI RAATTY 2 cut(s) 362, 380
Asp700I GAANNNNTTC 1 cut(s) 687
AspLEI GCGC 2 cut(s) 210, 234
AspS9I GGNCC 2 cut(s) 78, 125
AvaI CYCGRG 3 cut(s) 122, 192, 255
BaeGI GKGCMC 1 cut(s) 646
BamHI GGATCC 1 cut(s) 106
Bbv12I GWGCWC 1 cut(s) 646
BbvI GCAGC 2 cut(s) 17, 680
BccI CCATC 1 cut(s) 574
BceAI ACGGC 3 cut(s) 54, 185, 219
BcgI CGANNNNNNTGC 2 cut(s) 4, 38
BciT130I CCWGG 1 cut(s) 103
BcoDI GTCTC 1 cut(s) 160
BfaI CTAG 1 cut(s) 312
BfmI CTRYAG 1 cut(s) 470
BfoI RGCGCY 2 cut(s) 211, 235
BisI GCNGC 4 cut(s) 6, 128, 131, 669
BlsI GCNGC 4 cut(s) 7, 129, 132, 670
BmcAI AGTACT 1 cut(s) 293
Bme1390I CCNGG 1 cut(s) 103
BmeT110I CYCGRG 3 cut(s) 122, 192, 255
BmgT120I GGNCC 2 cut(s) 78, 125
BmiI GGNNCC 1 cut(s) 108
BmrFI CCNGG 1 cut(s) 103
BmsI GCATC 2 cut(s) 30, 178
BplI GAGNNNNNCTC 2 cut(s) 687, 719
BpmI CTGGAG 2 cut(s) 249, 596
BpuEI CTTGAG 1 cut(s) 689
BsaJI CCNNGG 2 cut(s) 102, 522
BsaXI ACNNNNNCTCC 2 cut(s) 308, 338
Bsc4I CCNNNNNNNGG 1 cut(s) 137
Bse118I RCCGGY 1 cut(s) 137
Bse1I ACTGG 1 cut(s) 579
Bse3DI GCAATG 1 cut(s) 455
BseBI CCWGG 1 cut(s) 103
BseDI CCNNGG 2 cut(s) 102, 522
BseLI CCNNNNNNNGG 1 cut(s) 137
BseMI GCAATG 1 cut(s) 455
BseMII CTCAG 1 cut(s) 434
BseNI ACTGG 1 cut(s) 579
BseSI GKGCMC 1 cut(s) 646
BseXI GCAGC 2 cut(s) 17, 680
BshFI GGCC 4 cut(s) 79, 127, 141, 346
BsiHKAI GWGCWC 1 cut(s) 646
BsiHKCI CYCGRG 3 cut(s) 122, 192, 255
BsiSI CCGG 1 cut(s) 138
BslI CCNNNNNNNGG 1 cut(s) 137
BsmAI GTCTC 1 cut(s) 160
BsmBI CGTCTC 1 cut(s) 160
BsnI GGCC 4 cut(s) 79, 127, 141, 346
BsoBI CYCGRG 3 cut(s) 122, 192, 255
Bsp1286I GDGCHC 1 cut(s) 646
Bsp143I GATC 3 cut(s) 106, 285, 605
BspACI CCGC 6 cut(s) 42, 67, 128, 131, 275, 407
BspANI GGCC 4 cut(s) 79, 127, 141, 346
BspCNI CTCAG 1 cut(s) 433
BspLI GGNNCC 1 cut(s) 108
BspMAI CTGCAG 1 cut(s) 474
BspPI GGATC 3 cut(s) 101, 114, 600
BsrDI GCAATG 1 cut(s) 455
BsrFI RCCGGY 1 cut(s) 137
BsrI ACTGG 1 cut(s) 579
BssAI RCCGGY 1 cut(s) 137
BssECI CCNNGG 2 cut(s) 102, 522
BssMI GATC 3 cut(s) 106, 285, 605
BssNAI GTATAC 1 cut(s) 119
BssT1I CCWWGG 1 cut(s) 522
Bst1107I GTATAC 1 cut(s) 119
Bst2UI CCWGG 1 cut(s) 103
Bst4CI ACNGT 2 cut(s) 402, 718
BstC8I GCNNGC 1 cut(s) 666
BstDEI CTNAG 2 cut(s) 11, 420
BstEII GGTNACC 1 cut(s) 653
BstH2I RGCGCY 2 cut(s) 211, 235
BstHHI GCGC 2 cut(s) 210, 234
BstKTI GATC 3 cut(s) 109, 288, 608
BstMAI GTCTC 1 cut(s) 160
BstMBI GATC 3 cut(s) 106, 285, 605
BstMWI GCNNNNNNNGC 1 cut(s) 197
BstNI CCWGG 1 cut(s) 103
BstPI GGTNACC 1 cut(s) 653
BstSCI CCNGG 1 cut(s) 101
BstSFI CTRYAG 1 cut(s) 470
BstSLI GKGCMC 1 cut(s) 646
BstV1I GCAGC 2 cut(s) 17, 680
BstX2I RGATCY 2 cut(s) 106, 605
BstYI RGATCY 2 cut(s) 106, 605
BstZ17I GTATAC 1 cut(s) 119
BsuRI GGCC 4 cut(s) 79, 127, 141, 346
BtgZI GCGATG 1 cut(s) 7
Cac8I GCNNGC 1 cut(s) 666
CaiI CAGNNNCTG 1 cut(s) 272
CfoI GCGC 2 cut(s) 210, 234
Cfr10I RCCGGY 1 cut(s) 137
Cfr13I GGNCC 2 cut(s) 78, 125
CseI GACGC 1 cut(s) 85
Csp6I GTAC 2 cut(s) 292, 709
CviAII CATG 2 cut(s) 679, 712
CviQI GTAC 2 cut(s) 292, 709
DdeI CTNAG 2 cut(s) 11, 420
DpnI GATC 3 cut(s) 108, 287, 607
DpnII GATC 3 cut(s) 106, 285, 605
EaeI YGGCCR 1 cut(s) 139
EciI GGCGGA 2 cut(s) 31, 56
Eco130I CCWWGG 1 cut(s) 522
Eco57I CTGAAG 1 cut(s) 327
Eco88I CYCGRG 3 cut(s) 122, 192, 255
Eco91I GGTNACC 1 cut(s) 653
EcoO65I GGTNACC 1 cut(s) 653
EcoRII CCWGG 1 cut(s) 101
EcoT14I CCWWGG 1 cut(s) 522
ErhI CCWWGG 1 cut(s) 522
Esp3I CGTCTC 1 cut(s) 160
FaeI CATG 2 cut(s) 682, 715
FaiI YATR 7 cut(s) 119, 146, 428, 492, 635, 680, 713
FatI CATG 2 cut(s) 678, 711
FblI GTMKAC 1 cut(s) 118
Fnu4HI GCNGC 4 cut(s) 6, 128, 131, 669
Fsp4HI GCNGC 4 cut(s) 6, 128, 131, 669
FspBI CTAG 1 cut(s) 312
GlaI GCGC 2 cut(s) 209, 233
GluI GCNGC 4 cut(s) 6, 128, 131, 669
GsuI CTGGAG 2 cut(s) 249, 596
HaeII RGCGCY 2 cut(s) 211, 235
HaeIII GGCC 4 cut(s) 79, 127, 141, 346
HapII CCGG 1 cut(s) 138
HgaI GACGC 1 cut(s) 85
HhaI GCGC 2 cut(s) 210, 234
Hin1II CATG 2 cut(s) 682, 715
Hin6I GCGC 2 cut(s) 208, 232
HinP1I GCGC 2 cut(s) 208, 232
HincII GTYRAC 1 cut(s) 615
HindII GTYRAC 1 cut(s) 615
HindIII AAGCTT 1 cut(s) 686
HinfI GANTC 2 cut(s) 182, 251
HpaII CCGG 1 cut(s) 138
Hpy166II GTNNAC 3 cut(s) 119, 615, 644
Hpy188I TCNGA 3 cut(s) 187, 248, 534
Hpy188III TCNNGA 9 cut(s) 110, 163, 194, 255, 266, 299, 328, 422, 623
Hpy8I GTNNAC 3 cut(s) 119, 615, 644
Hpy99I CGWCG 2 cut(s) 101, 240
HpyAV CCTTC 3 cut(s) 107, 211, 470
HpyCH4III ACNGT 2 cut(s) 402, 718
HpyCH4V TGCA 4 cut(s) 460, 472, 502, 644
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
HpyF3I CTNAG 2 cut(s) 11, 420
Hsp92II CATG 2 cut(s) 682, 715
HspAI GCGC 2 cut(s) 208, 232
Kzo9I GATC 3 cut(s) 106, 285, 605
LmnI GCTCC 3 cut(s) 44, 268, 695
Lsp1109I GCAGC 2 cut(s) 17, 680
LweI GCATC 2 cut(s) 30, 178
MaeI CTAG 1 cut(s) 312
MaeIII GTNAC 1 cut(s) 653
MalI GATC 3 cut(s) 108, 287, 607
MboI GATC 3 cut(s) 106, 285, 605
MboII GAAGA 2 cut(s) 233, 443
MflI RGATCY 2 cut(s) 106, 605
MhlI GDGCHC 1 cut(s) 646
MluCI AATT 4 cut(s) 362, 380, 504, 618
MlyI GAGTC 1 cut(s) 176
MnlI CCTC 4 cut(s) 271, 330, 336, 521
MroXI GAANNNNTTC 1 cut(s) 687
MseI TTAA 3 cut(s) 516, 600, 721
MspI CCGG 1 cut(s) 138
MspR9I CCNGG 1 cut(s) 103
MvaI CCWGG 1 cut(s) 103
MwoI GCNNNNNNNGC 1 cut(s) 197
NdeII GATC 3 cut(s) 106, 285, 605
NlaIII CATG 2 cut(s) 682, 715
NlaIV GGNNCC 1 cut(s) 108
PaeR7I CTCGAG 2 cut(s) 192, 255
PdmI GAANNNNTTC 1 cut(s) 687
PfeI GAWTC 1 cut(s) 251
PkrI GCNGC 4 cut(s) 7, 129, 132, 670
PleI GAGTC 1 cut(s) 176
PpsI GAGTC 1 cut(s) 176
Psp6I CCWGG 1 cut(s) 101
PspEI GGTNACC 1 cut(s) 653
PspGI CCWGG 1 cut(s) 101
PspN4I GGNNCC 1 cut(s) 108
PspPI GGNCC 2 cut(s) 78, 125
PstI CTGCAG 1 cut(s) 474
PstNI CAGNNNCTG 1 cut(s) 272
PsuI RGATCY 2 cut(s) 106, 605
RsaI GTAC 2 cut(s) 293, 710
RsaNI GTAC 2 cut(s) 292, 709
SaqAI TTAA 3 cut(s) 516, 600, 721
SatI GCNGC 4 cut(s) 6, 128, 131, 669
Sau3AI GATC 3 cut(s) 106, 285, 605
Sau96I GGNCC 2 cut(s) 78, 125
SbfI CCTGCAGG 1 cut(s) 474
ScaI AGTACT 1 cut(s) 293
SchI GAGTC 1 cut(s) 176
ScrFI CCNGG 1 cut(s) 103
SdaI CCTGCAGG 1 cut(s) 474
SduI GDGCHC 1 cut(s) 646
SfaNI GCATC 2 cut(s) 30, 178
SfcI CTRYAG 1 cut(s) 470
Sfr274I CTCGAG 2 cut(s) 192, 255
SlaI CTCGAG 2 cut(s) 192, 255
SmlI CTYRAG 3 cut(s) 192, 255, 704
SmoI CTYRAG 3 cut(s) 192, 255, 704
Sse8387I CCTGCAGG 1 cut(s) 474
Sse9I AATT 4 cut(s) 362, 380, 504, 618
SsiI CCGC 6 cut(s) 42, 67, 128, 131, 275, 407
SspMI CTAG 1 cut(s) 312
StyD4I CCNGG 1 cut(s) 101
StyI CCWWGG 1 cut(s) 522
TaaI ACNGT 2 cut(s) 402, 718
TaqI TCGA 8 cut(s) 174, 193, 204, 238, 256, 288, 327, 335
TasI AATT 4 cut(s) 362, 380, 504, 618
TatI WGTACW 2 cut(s) 291, 708
TauI GCSGC 2 cut(s) 130, 133
TfiI GAWTC 1 cut(s) 251
Tru1I TTAA 3 cut(s) 516, 600, 721
Tru9I TTAA 3 cut(s) 516, 600, 721
TseI GCWGC 2 cut(s) 5, 668
TspDTI ATGAA 2 cut(s) 642, 667
VneI GTGCAC 1 cut(s) 642
XapI RAATTY 2 cut(s) 362, 380
XhoI CTCGAG 2 cut(s) 192, 255
XmiI GTMKAC 1 cut(s) 118
XmnI GAANNNNTTC 1 cut(s) 687
XspI CTAG 1 cut(s) 312
ZrmI AGTACT 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.