Prupe.5G077000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0013217
Physical Location & Seq
Reverse (-)
9096487 .. 9100707
4221 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G077000.1

Sequence Viewer

Length: 720 bp
ATGGCCGCTCTAAGCATTGGCATCGCTACCACCAGCTCACCCTTACTTACAAGGCCGACACCGCGTAGTTCGAGGCCTACAAGAATTTCCTGCATTGGATGGGACCCAGAAGGTGTCTTGGGGCCGCCGCAGACGGGCCATTTGGCCCGAATAGAGTTCAAGAGGCGGCTGGAAAGAGACGCCGATGCTCGAGAAGCCTTCGAGCGCCAAGTCATTGAAGAAAAAGAGCGCCGTAGAGCTCTTAGAGAATCTCGGGCTGCGCCGGATACTGCAGAGGAGTTGATCGAGTACTTTCTCAACACTGAGGCACGGGAAATTGAGTTCGAGATTTCGAGGTTGAGGCAACGATTGGACAAGGAATTTTTCTCACACCTTCAATATGAGCTAGGTCAGCTTCGGTTTGCTGTTTCAAAAACTCAGGATATAGAGGATAGATTGATTGAGTTGGAAGCATTGCAGAAAGCCCTGCAGGAAGGAACAGAGGCATATGACAAAATGCAAACTGACCTCATTAAAGCAAAGCAGAGTCTAACCAAAGTCTTGACTTCAAAGGATGTAAAAGCAACTTTACTAGATATGGTTGAGCGCAATGAACTTAATAGATCCTTCTTGACACTTCTTGATGAAAACATTGCAAATGCACACAAGGGCAACCAGAAGCAAGCAGCTGATTTCATGGAAAAGCTTCGTGGGGCTGTTCTCAAGTACATGACAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

240

Amino Acids

27.45

Weight (kDa)

6.39

Isoelectric Point (pI)

65.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013217)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62780
fragaria_vesca FvH4_5g00440 FvH4_5g00440 FvH4_5g00440
malus_domestica MD04G1081100.v1.1
prunus_persica Prupe.5G077000_v2.0.a1
pyrus_communis pycom04g07320
rosa_chinensis RchiOBHm_Chr7g0202061
rosa_laevigata RLG00000003628
rosa_multiflora Rmu_sc0006592.1_g000010 Rmu_sc0010587.1_g000002
rosa_roxburghii Rroxscaffold_3G00254890
rosa_rugosa Rorug07G0067700
rosa_samantha Rh7AG195100 Rh7BG196500 Rh7CG206300 Rh7DG201700
rosa_wichuraiana Rw7G017090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 8
AccII CGCG 1 cut(s) 64
AciI CCGC 5 cut(s) 6, 62, 125, 128, 166
AclWI GGATC 1 cut(s) 597
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 84, 359
AcyI GRCGYC 1 cut(s) 180
AfaI GTAC 2 cut(s) 290, 707
AfiI CCNNNNNNNGG 1 cut(s) 134
AgsI TTSAA 5 cut(s) 160, 218, 377, 411, 549
AloI GAACNNNNNNTCC 2 cut(s) 305, 337
AluBI AGCT 6 cut(s) 36, 239, 385, 394, 668, 685
AluI AGCT 6 cut(s) 36, 239, 385, 394, 668, 685
Alw21I GWGCWC 1 cut(s) 241
Alw26I GTCTC 1 cut(s) 171
AlwI GGATC 1 cut(s) 597
Ama87I CYCGRG 2 cut(s) 189, 252
AoxI GGCC 6 cut(s) 3, 53, 74, 122, 136, 144
ApeKI GCWGC 2 cut(s) 257, 665
ApoI RAATTY 2 cut(s) 84, 359
ArsI GACNNNNNNTTYG 2 cut(s) 124, 156
Asp700I GAANNNNTTC 1 cut(s) 684
AspLEI GCGC 4 cut(s) 207, 231, 262, 588
AspS9I GGNCC 4 cut(s) 103, 122, 136, 145
AsuHPI GGTGA 1 cut(s) 30
AvaI CYCGRG 2 cut(s) 189, 252
AvaII GGWCC 1 cut(s) 103
BanII GRGCYC 1 cut(s) 241
Bbv12I GWGCWC 1 cut(s) 241
BbvI GCAGC 2 cut(s) 244, 677
BccI CCATC 1 cut(s) 93
BceAI ACGGC 1 cut(s) 216
BcgI CGANNNNNNTGC 2 cut(s) 4, 38
BciVI GTATCC 1 cut(s) 259
BcoDI GTCTC 1 cut(s) 171
BfaI CTAG 2 cut(s) 386, 572
BfmI CTRYAG 2 cut(s) 270, 467
BfoI RGCGCY 2 cut(s) 208, 232
BfuI GTATCC 1 cut(s) 259
BisI GCNGC 6 cut(s) 6, 125, 128, 167, 258, 666
BlsI GCNGC 6 cut(s) 7, 126, 129, 168, 259, 667
BmcAI AGTACT 1 cut(s) 290
Bme18I GGWCC 1 cut(s) 103
BmeT110I CYCGRG 2 cut(s) 189, 252
BmgT120I GGNCC 4 cut(s) 103, 122, 136, 145
BmiI GGNNCC 3 cut(s) 104, 105, 123
BmsI GCATC 2 cut(s) 30, 175
BpuEI CTTGAG 1 cut(s) 686
BsaHI GRCGYC 1 cut(s) 180
Bsc4I CCNNNNNNNGG 1 cut(s) 134
Bse3DI GCAATG 3 cut(s) 452, 595, 630
BseGI GGATG 2 cut(s) 104, 559
BseLI CCNNNNNNNGG 1 cut(s) 134
BseMI GCAATG 3 cut(s) 452, 595, 630
BseMII CTCAG 2 cut(s) 294, 431
BseRI GAGGAG 1 cut(s) 290
BseXI GCAGC 2 cut(s) 244, 677
Bsh1236I CGCG 1 cut(s) 64
BshFI GGCC 6 cut(s) 5, 55, 76, 124, 138, 146
BsiHKAI GWGCWC 1 cut(s) 241
BsiHKCI CYCGRG 2 cut(s) 189, 252
BsiSI CCGG 1 cut(s) 263
BslFI GGGAC 1 cut(s) 116
BslI CCNNNNNNNGG 1 cut(s) 134
BsmAI GTCTC 1 cut(s) 171
BsmBI CGTCTC 1 cut(s) 171
BsmFI GGGAC 1 cut(s) 116
BsnI GGCC 6 cut(s) 5, 55, 76, 124, 138, 146
BsoBI CYCGRG 2 cut(s) 189, 252
Bsp1286I GDGCHC 1 cut(s) 241
Bsp143I GATC 2 cut(s) 282, 602
BspACI CCGC 5 cut(s) 6, 62, 125, 128, 166
BspANI GGCC 6 cut(s) 5, 55, 76, 124, 138, 146
BspCNI CTCAG 2 cut(s) 295, 430
BspFNI CGCG 1 cut(s) 64
BspLI GGNNCC 3 cut(s) 104, 105, 123
BspMAI CTGCAG 2 cut(s) 274, 471
BspPI GGATC 1 cut(s) 597
BsrBI CCGCTC 1 cut(s) 8
BsrDI GCAATG 3 cut(s) 452, 595, 630
BssMI GATC 2 cut(s) 282, 602
BssNI GRCGYC 1 cut(s) 180
Bst4CI ACNGT 1 cut(s) 715
BstACI GRCGYC 1 cut(s) 180
BstC8I GCNNGC 1 cut(s) 663
BstDEI CTNAG 4 cut(s) 11, 242, 303, 417
BstF5I GGATG 2 cut(s) 104, 559
BstFNI CGCG 1 cut(s) 64
BstH2I RGCGCY 2 cut(s) 208, 232
BstHHI GCGC 4 cut(s) 207, 231, 262, 588
BstKTI GATC 2 cut(s) 285, 605
BstMAI GTCTC 1 cut(s) 171
BstMBI GATC 2 cut(s) 282, 602
BstMWI GCNNNNNNNGC 3 cut(s) 61, 194, 391
BstSFI CTRYAG 2 cut(s) 270, 467
BstUI CGCG 1 cut(s) 64
BstV1I GCAGC 2 cut(s) 244, 677
BstX2I RGATCY 1 cut(s) 602
BstYI RGATCY 1 cut(s) 602
BsuI GTATCC 1 cut(s) 259
BsuRI GGCC 6 cut(s) 5, 55, 76, 124, 138, 146
BtgZI GCGATG 1 cut(s) 7
BtsCI GGATG 2 cut(s) 104, 559
BtsIMutI CAGTG 1 cut(s) 300
Cac8I GCNNGC 1 cut(s) 663
CfoI GCGC 4 cut(s) 207, 231, 262, 588
Cfr13I GGNCC 4 cut(s) 103, 122, 136, 145
CseI GACGC 1 cut(s) 188
Csp6I GTAC 2 cut(s) 289, 706
CviAII CATG 2 cut(s) 676, 709
CviQI GTAC 2 cut(s) 289, 706
DdeI CTNAG 4 cut(s) 11, 242, 303, 417
DpnI GATC 2 cut(s) 284, 604
DpnII GATC 2 cut(s) 282, 602
EaeI YGGCCR 1 cut(s) 3
Ecl136II GAGCTC 1 cut(s) 239
Eco147I AGGCCT 1 cut(s) 76
Eco24I GRGCYC 1 cut(s) 241
Eco47I GGWCC 1 cut(s) 103
Eco53kI GAGCTC 1 cut(s) 239
Eco88I CYCGRG 2 cut(s) 189, 252
EcoICRI GAGCTC 1 cut(s) 239
EcoO109I RGGNCCY 1 cut(s) 103
EcoT38I GRGCYC 1 cut(s) 241
Esp3I CGTCTC 1 cut(s) 171
FaeI CATG 2 cut(s) 679, 712
FaiI YATR 7 cut(s) 381, 425, 487, 489, 578, 677, 710
FaqI GGGAC 1 cut(s) 116
FatI CATG 2 cut(s) 675, 708
FauNDI CATATG 1 cut(s) 487
Fnu4HI GCNGC 6 cut(s) 6, 125, 128, 167, 258, 666
FokI GGATG 2 cut(s) 111, 566
FriOI GRGCYC 1 cut(s) 241
Fsp4HI GCNGC 6 cut(s) 6, 125, 128, 167, 258, 666
FspBI CTAG 2 cut(s) 386, 572
GlaI GCGC 4 cut(s) 206, 230, 261, 587
GluI GCNGC 6 cut(s) 6, 125, 128, 167, 258, 666
HaeII RGCGCY 2 cut(s) 208, 232
HaeIII GGCC 6 cut(s) 5, 55, 76, 124, 138, 146
HapII CCGG 1 cut(s) 263
HgaI GACGC 1 cut(s) 188
HhaI GCGC 4 cut(s) 207, 231, 262, 588
Hin1I GRCGYC 1 cut(s) 180
Hin1II CATG 2 cut(s) 679, 712
Hin6I GCGC 4 cut(s) 205, 229, 260, 586
HinP1I GCGC 4 cut(s) 205, 229, 260, 586
HindIII AAGCTT 1 cut(s) 683
HinfI GANTC 2 cut(s) 248, 526
HpaII CCGG 1 cut(s) 263
HphI GGTGA 1 cut(s) 30
Hpy188III TCNNGA 7 cut(s) 160, 191, 325, 419, 541, 610, 620
HpyAV CCTTC 5 cut(s) 104, 208, 383, 467, 616
HpyCH4III ACNGT 1 cut(s) 715
HpyCH4V TGCA 7 cut(s) 93, 272, 457, 469, 499, 635, 641
HpyF10VI GCNNNNNNNGC 3 cut(s) 61, 194, 391
HpyF3I CTNAG 4 cut(s) 11, 242, 303, 417
Hsp92I GRCGYC 1 cut(s) 180
Hsp92II CATG 2 cut(s) 679, 712
HspAI GCGC 4 cut(s) 205, 229, 260, 586
KflI GGGWCCC 1 cut(s) 103
Kzo9I GATC 2 cut(s) 282, 602
LpnPI CCDG 9 cut(s) 46, 103, 120, 155, 276, 404, 455, 479, 668
Lsp1109I GCAGC 2 cut(s) 244, 677
LweI GCATC 2 cut(s) 30, 175
MaeI CTAG 2 cut(s) 386, 572
MalI GATC 2 cut(s) 284, 604
MbiI CCGCTC 1 cut(s) 8
MboI GATC 2 cut(s) 282, 602
MboII GAAGA 1 cut(s) 230
MflI RGATCY 1 cut(s) 602
MhlI GDGCHC 1 cut(s) 241
MluCI AATT 3 cut(s) 84, 315, 359
MlyI GAGTC 1 cut(s) 535
MmeI TCCRAC 1 cut(s) 426
MnlI CCTC 9 cut(s) 66, 156, 268, 298, 327, 333, 421, 475, 518
MroXI GAANNNNTTC 1 cut(s) 684
MseI TTAA 2 cut(s) 513, 597
MspA1I CMGCKG 1 cut(s) 668
MspI CCGG 1 cut(s) 263
MvnI CGCG 1 cut(s) 64
MwoI GCNNNNNNNGC 3 cut(s) 61, 194, 391
NdeI CATATG 1 cut(s) 487
NdeII GATC 2 cut(s) 282, 602
NlaIII CATG 2 cut(s) 679, 712
NlaIV GGNNCC 3 cut(s) 104, 105, 123
PaeR7I CTCGAG 1 cut(s) 189
PceI AGGCCT 1 cut(s) 76
PdmI GAANNNNTTC 1 cut(s) 684
PfeI GAWTC 1 cut(s) 248
PkrI GCNGC 6 cut(s) 7, 126, 129, 168, 259, 667
PleI GAGTC 1 cut(s) 534
PpsI GAGTC 1 cut(s) 534
PpuMI RGGWCCY 1 cut(s) 103
Psp124BI GAGCTC 1 cut(s) 241
Psp5II RGGWCCY 1 cut(s) 103
PspN4I GGNNCC 3 cut(s) 104, 105, 123
PspPI GGNCC 4 cut(s) 103, 122, 136, 145
PspPPI RGGWCCY 1 cut(s) 103
PstI CTGCAG 2 cut(s) 274, 471
PsuI RGATCY 1 cut(s) 602
PvuII CAGCTG 1 cut(s) 668
RsaI GTAC 2 cut(s) 290, 707
RsaNI GTAC 2 cut(s) 289, 706
SacI GAGCTC 1 cut(s) 241
SaqAI TTAA 2 cut(s) 513, 597
SatI GCNGC 6 cut(s) 6, 125, 128, 167, 258, 666
Sau3AI GATC 2 cut(s) 282, 602
Sau96I GGNCC 4 cut(s) 103, 122, 136, 145
SbfI CCTGCAGG 1 cut(s) 471
ScaI AGTACT 1 cut(s) 290
SchI GAGTC 1 cut(s) 535
SdaI CCTGCAGG 1 cut(s) 471
SduI GDGCHC 1 cut(s) 241
SfaNI GCATC 2 cut(s) 30, 175
SfcI CTRYAG 2 cut(s) 270, 467
Sfr274I CTCGAG 1 cut(s) 189
SinI GGWCC 1 cut(s) 103
SlaI CTCGAG 1 cut(s) 189
SmlI CTYRAG 2 cut(s) 189, 701
SmoI CTYRAG 2 cut(s) 189, 701
Sse8387I CCTGCAGG 1 cut(s) 471
Sse9I AATT 3 cut(s) 84, 315, 359
SseBI AGGCCT 1 cut(s) 76
SsiI CCGC 5 cut(s) 6, 62, 125, 128, 166
SspMI CTAG 2 cut(s) 386, 572
SstI GAGCTC 1 cut(s) 241
StuI AGGCCT 1 cut(s) 76
TaaI ACNGT 1 cut(s) 715
TaqI TCGA 6 cut(s) 71, 190, 201, 285, 324, 332
TasI AATT 3 cut(s) 84, 315, 359
TatI WGTACW 2 cut(s) 288, 705
TauI GCSGC 4 cut(s) 8, 127, 130, 169
TfiI GAWTC 1 cut(s) 248
Tru1I TTAA 2 cut(s) 513, 597
Tru9I TTAA 2 cut(s) 513, 597
TscAI CASTG 1 cut(s) 307
TseI GCWGC 2 cut(s) 257, 665
TspDTI ATGAA 3 cut(s) 606, 639, 664
TspRI CASTG 1 cut(s) 307
VpaK11BI GGWCC 1 cut(s) 103
XapI RAATTY 2 cut(s) 84, 359
XhoI CTCGAG 1 cut(s) 189
XmnI GAANNNNTTC 1 cut(s) 684
XspI CTAG 2 cut(s) 386, 572
ZrmI AGTACT 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.