MD04G1081100.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0013217
Physical Location & Seq
Forward (+)
11205227 .. 11208538
3312 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1081100.v1.1.491

Sequence Viewer

Length: 726 bp
ATGGCTGCTCTAACTCTAAGCATTGGCATCGCCACCACCAGCTCAGCTCTACTTAAAAGGCCGATGCCGCGTCGTCCGAGGGCCGCAAGAATTTCCTGCATTGGATGGGACCCGGAGGGTGTATTGGGACCACCGCAGACGGGCCATTTGGCTCGGATAGAGTTCAAGAGGCGGTTGGAAAAAGACGCCGATGCTCGAGAAGAATTCGAACGCCAAGTCATTGAAGAGAAAGAGCGGCGTCGAACTGTTAGAGAATCCCGGGTTGCGCCAGATACGGCGGAGGAGTTGATAGAGTACTTTCTCAACACTGAAGCTCGGGAGATTGAGTTCGAGATTTCGAGGTTGAGGCCAAGATTGGACAAGGAGTTTTTCTCGCACTTACAATATGAGCTAGGTCAGCTTCGGTTTTCTGTTTCAAAAACTCAGGATATAGAAGATAGATTGATTGAGCTGGAAGCATTGCAGAAGGCCCTGCAGGAAGGGACAGAAGCATATGACAAAATGCAAACCGACCTCATTAAAGCAAAGCTAAGTCTGACCAAAGTTCTGTCTTCAAAGGATGTAAAATCAACTTTACTAGAGATGGTTGAACACAACGAGCTGAATAGATCCTTCTTGACTCTTCTTGACGAAAACATAGCAAATGCGCACAAGGGTAACCAGAAGCAAGCAGCAGAGTTCATGGAAAAGGTTCGTGGGGCTGTTCTCAAGTACATCACAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

242

Amino Acids

27.71

Weight (kDa)

6.49

Isoelectric Point (pI)

60.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013217)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62780
fragaria_vesca FvH4_5g00440 FvH4_5g00440 FvH4_5g00440
malus_domestica MD04G1081100.v1.1
prunus_persica Prupe.5G077000_v2.0.a1
pyrus_communis pycom04g07320
rosa_chinensis RchiOBHm_Chr7g0202061
rosa_laevigata RLG00000003628
rosa_multiflora Rmu_sc0006592.1_g000010 Rmu_sc0010587.1_g000002
rosa_roxburghii Rroxscaffold_3G00254890
rosa_rugosa Rorug07G0067700
rosa_samantha Rh7AG195100 Rh7BG196500 Rh7CG206300 Rh7DG201700
rosa_wichuraiana Rw7G017090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 648
AccBSI CCGCTC 1 cut(s) 235
AccII CGCG 1 cut(s) 70
AciI CCGC 6 cut(s) 68, 84, 134, 172, 235, 278
AclWI GGATC 1 cut(s) 603
AcsI RAATTY 2 cut(s) 90, 203
AcuI CTGAAG 1 cut(s) 330
AcyI GRCGYC 2 cut(s) 186, 238
AfaI GTAC 2 cut(s) 296, 713
AfiI CCNNNNNNNGG 1 cut(s) 140
AgsI TTSAA 5 cut(s) 166, 224, 417, 555, 590
AloI GAACNNNNNNTCC 2 cut(s) 311, 343
AluBI AGCT 9 cut(s) 42, 47, 314, 391, 400, 451, 529, 601, 722
AluI AGCT 9 cut(s) 42, 47, 314, 391, 400, 451, 529, 601, 722
AlwI GGATC 1 cut(s) 603
Ama87I CYCGRG 3 cut(s) 195, 258, 315
AoxI GGCC 5 cut(s) 59, 81, 142, 347, 468
ApeKI GCWGC 2 cut(s) 5, 671
ApoI RAATTY 2 cut(s) 90, 203
ArsI GACNNNNNNTTYG 4 cut(s) 130, 162, 201, 233
Asp700I GAANNNNTTC 1 cut(s) 690
AspLEI GCGC 2 cut(s) 268, 649
AspS9I GGNCC 5 cut(s) 81, 109, 128, 142, 469
AsuC2I CCSGG 3 cut(s) 113, 259, 260
AsuII TTCGAA 1 cut(s) 207
AvaI CYCGRG 3 cut(s) 195, 258, 315
AvaII GGWCC 2 cut(s) 109, 128
BbsI GAAGAC 1 cut(s) 543
BbvI GCAGC 1 cut(s) 683
BccI CCATC 2 cut(s) 99, 577
BceAI ACGGC 1 cut(s) 291
BcgI CGANNNNNNTGC 2 cut(s) 10, 44
BcnI CCSGG 3 cut(s) 113, 259, 260
BfaI CTAG 2 cut(s) 392, 578
BfmI CTRYAG 1 cut(s) 473
BisI GCNGC 5 cut(s) 6, 68, 84, 236, 672
BlpI GCTNAGC 1 cut(s) 43
BlsI GCNGC 5 cut(s) 7, 69, 85, 237, 673
BmcAI AGTACT 1 cut(s) 296
Bme1390I CCNGG 3 cut(s) 113, 259, 260
Bme18I GGWCC 2 cut(s) 109, 128
BmeT110I CYCGRG 3 cut(s) 195, 258, 315
BmgT120I GGNCC 5 cut(s) 81, 109, 128, 142, 469
BmiI GGNNCC 3 cut(s) 110, 111, 129
BmrFI CCNGG 3 cut(s) 113, 259, 260
BmsI GCATC 3 cut(s) 36, 54, 181
BpiI GAAGAC 1 cut(s) 543
BplI GAGNNNNNCTC 2 cut(s) 356, 388
Bpu1102I GCTNAGC 1 cut(s) 43
Bpu14I TTCGAA 1 cut(s) 207
BpuEI CTTGAG 1 cut(s) 692
BpuMI CCSGG 3 cut(s) 113, 259, 260
BsaHI GRCGYC 2 cut(s) 186, 238
BsaJI CCNNGG 2 cut(s) 77, 258
BsaXI ACNNNNNCTCC 2 cut(s) 311, 341
Bsc4I CCNNNNNNNGG 1 cut(s) 140
Bse3DI GCAATG 1 cut(s) 458
BseDI CCNNGG 2 cut(s) 77, 258
BseGI GGATG 2 cut(s) 110, 565
BseLI CCNNNNNNNGG 1 cut(s) 140
BseMI GCAATG 1 cut(s) 458
BseMII CTCAG 2 cut(s) 57, 437
BseRI GAGGAG 1 cut(s) 296
BseXI GCAGC 1 cut(s) 683
Bsh1236I CGCG 1 cut(s) 70
BshFI GGCC 5 cut(s) 61, 83, 144, 349, 470
BsiHKCI CYCGRG 3 cut(s) 195, 258, 315
BsiSI CCGG 2 cut(s) 113, 259
BslFI GGGAC 3 cut(s) 122, 141, 496
BslI CCNNNNNNNGG 1 cut(s) 140
BsmFI GGGAC 3 cut(s) 122, 141, 496
BsnI GGCC 5 cut(s) 61, 83, 144, 349, 470
BsoBI CYCGRG 3 cut(s) 195, 258, 315
Bsp119I TTCGAA 1 cut(s) 207
Bsp143I GATC 1 cut(s) 608
Bsp1720I GCTNAGC 1 cut(s) 43
BspACI CCGC 6 cut(s) 68, 84, 134, 172, 235, 278
BspANI GGCC 5 cut(s) 61, 83, 144, 349, 470
BspCNI CTCAG 2 cut(s) 56, 436
BspFNI CGCG 1 cut(s) 70
BspLI GGNNCC 3 cut(s) 110, 111, 129
BspMAI CTGCAG 1 cut(s) 477
BspPI GGATC 1 cut(s) 603
BspT104I TTCGAA 1 cut(s) 207
BsrBI CCGCTC 1 cut(s) 235
BsrDI GCAATG 1 cut(s) 458
BssECI CCNNGG 2 cut(s) 77, 258
BssMI GATC 1 cut(s) 608
BssNI GRCGYC 2 cut(s) 186, 238
Bst4CI ACNGT 1 cut(s) 247
Bst6I CTCTTC 2 cut(s) 219, 627
BstACI GRCGYC 2 cut(s) 186, 238
BstBI TTCGAA 1 cut(s) 207
BstC8I GCNNGC 1 cut(s) 669
BstDEI CTNAG 5 cut(s) 17, 43, 423, 530, 723
BstEII GGTNACC 1 cut(s) 656
BstF5I GGATG 2 cut(s) 110, 565
BstFNI CGCG 1 cut(s) 70
BstHHI GCGC 2 cut(s) 268, 649
BstKTI GATC 1 cut(s) 611
BstMBI GATC 1 cut(s) 608
BstMWI GCNNNNNNNGC 2 cut(s) 67, 397
BstPI GGTNACC 1 cut(s) 656
BstSCI CCNGG 3 cut(s) 111, 257, 258
BstSFI CTRYAG 1 cut(s) 473
BstUI CGCG 1 cut(s) 70
BstV1I GCAGC 1 cut(s) 683
BstV2I GAAGAC 1 cut(s) 543
BstX2I RGATCY 1 cut(s) 608
BstYI RGATCY 1 cut(s) 608
BsuRI GGCC 5 cut(s) 61, 83, 144, 349, 470
BtgZI GCGATG 1 cut(s) 13
BtsCI GGATG 2 cut(s) 110, 565
BtsIMutI CAGTG 1 cut(s) 306
Cac8I GCNNGC 1 cut(s) 669
CfoI GCGC 2 cut(s) 268, 649
Cfr13I GGNCC 5 cut(s) 81, 109, 128, 142, 469
Cfr9I CCCGGG 1 cut(s) 258
CseI GACGC 3 cut(s) 59, 194, 227
Csp6I GTAC 2 cut(s) 295, 712
CviAII CATG 1 cut(s) 682
CviQI GTAC 2 cut(s) 295, 712
DdeI CTNAG 5 cut(s) 17, 43, 423, 530, 723
DpnI GATC 1 cut(s) 610
DpnII GATC 1 cut(s) 608
Eam1104I CTCTTC 2 cut(s) 219, 627
EarI CTCTTC 2 cut(s) 219, 627
EciI GGCGGA 1 cut(s) 293
Eco47I GGWCC 2 cut(s) 109, 128
Eco57I CTGAAG 1 cut(s) 330
Eco88I CYCGRG 3 cut(s) 195, 258, 315
Eco91I GGTNACC 1 cut(s) 656
EcoO109I RGGNCCY 2 cut(s) 109, 469
EcoO65I GGTNACC 1 cut(s) 656
EcoRI GAATTC 1 cut(s) 203
FaeI CATG 1 cut(s) 685
FaiI YATR 6 cut(s) 387, 431, 493, 495, 638, 683
FaqI GGGAC 3 cut(s) 122, 141, 496
FatI CATG 1 cut(s) 681
FauNDI CATATG 1 cut(s) 493
Fnu4HI GCNGC 5 cut(s) 6, 68, 84, 236, 672
FokI GGATG 2 cut(s) 117, 572
Fsp4HI GCNGC 5 cut(s) 6, 68, 84, 236, 672
FspAI RTGCGCAY 1 cut(s) 648
FspBI CTAG 2 cut(s) 392, 578
FspI TGCGCA 1 cut(s) 648
GlaI GCGC 2 cut(s) 267, 648
GluI GCNGC 5 cut(s) 6, 68, 84, 236, 672
HaeIII GGCC 5 cut(s) 61, 83, 144, 349, 470
HapII CCGG 2 cut(s) 113, 259
HgaI GACGC 3 cut(s) 59, 194, 227
HhaI GCGC 2 cut(s) 268, 649
Hin1I GRCGYC 2 cut(s) 186, 238
Hin1II CATG 1 cut(s) 685
Hin6I GCGC 2 cut(s) 266, 647
HinP1I GCGC 2 cut(s) 266, 647
HinfI GANTC 2 cut(s) 254, 619
HpaII CCGG 2 cut(s) 113, 259
Hpy188I TCNGA 3 cut(s) 78, 156, 537
Hpy188III TCNNGA 7 cut(s) 166, 197, 317, 331, 425, 616, 626
Hpy99I CGWCG 2 cut(s) 75, 243
HpyAV CCTTC 3 cut(s) 460, 473, 622
HpyCH4III ACNGT 1 cut(s) 247
HpyCH4V TGCA 4 cut(s) 99, 463, 475, 505
HpyF10VI GCNNNNNNNGC 2 cut(s) 67, 397
HpyF3I CTNAG 5 cut(s) 17, 43, 423, 530, 723
Hsp92I GRCGYC 2 cut(s) 186, 238
Hsp92II CATG 1 cut(s) 685
HspAI GCGC 2 cut(s) 266, 647
KflI GGGWCCC 1 cut(s) 109
Kzo9I GATC 1 cut(s) 608
Lsp1109I GCAGC 1 cut(s) 683
LweI GCATC 3 cut(s) 36, 54, 181
MaeI CTAG 2 cut(s) 392, 578
MaeIII GTNAC 1 cut(s) 656
MalI GATC 1 cut(s) 610
MbiI CCGCTC 1 cut(s) 235
MboI GATC 1 cut(s) 608
MboII GAAGA 5 cut(s) 212, 236, 446, 543, 614
MflI RGATCY 1 cut(s) 608
MluCI AATT 2 cut(s) 90, 203
MlyI GAGTC 1 cut(s) 613
MmeI TCCRAC 1 cut(s) 156
MnlI CCTC 7 cut(s) 72, 109, 162, 274, 333, 339, 524
MroXI GAANNNNTTC 1 cut(s) 690
MseI TTAA 2 cut(s) 54, 519
MspI CCGG 2 cut(s) 113, 259
MspR9I CCNGG 3 cut(s) 113, 259, 260
MvnI CGCG 1 cut(s) 70
MwoI GCNNNNNNNGC 2 cut(s) 67, 397
NciI CCSGG 3 cut(s) 113, 259, 260
NdeI CATATG 1 cut(s) 493
NdeII GATC 1 cut(s) 608
NlaIII CATG 1 cut(s) 685
NlaIV GGNNCC 3 cut(s) 110, 111, 129
NsbI TGCGCA 1 cut(s) 648
NspV TTCGAA 1 cut(s) 207
PaeR7I CTCGAG 1 cut(s) 195
PdmI GAANNNNTTC 1 cut(s) 690
PfeI GAWTC 1 cut(s) 254
PkrI GCNGC 5 cut(s) 7, 69, 85, 237, 673
PleI GAGTC 1 cut(s) 613
PpsI GAGTC 1 cut(s) 613
PpuMI RGGWCCY 1 cut(s) 109
Psp5II RGGWCCY 1 cut(s) 109
PspEI GGTNACC 1 cut(s) 656
PspN4I GGNNCC 3 cut(s) 110, 111, 129
PspPI GGNCC 5 cut(s) 81, 109, 128, 142, 469
PspPPI RGGWCCY 1 cut(s) 109
PstI CTGCAG 1 cut(s) 477
PsuI RGATCY 1 cut(s) 608
RsaI GTAC 2 cut(s) 296, 713
RsaNI GTAC 2 cut(s) 295, 712
SaqAI TTAA 2 cut(s) 54, 519
SatI GCNGC 5 cut(s) 6, 68, 84, 236, 672
Sau3AI GATC 1 cut(s) 608
Sau96I GGNCC 5 cut(s) 81, 109, 128, 142, 469
SbfI CCTGCAGG 1 cut(s) 477
ScaI AGTACT 1 cut(s) 296
SchI GAGTC 1 cut(s) 613
ScrFI CCNGG 3 cut(s) 113, 259, 260
SdaI CCTGCAGG 1 cut(s) 477
SfaNI GCATC 3 cut(s) 36, 54, 181
SfcI CTRYAG 1 cut(s) 473
Sfr274I CTCGAG 1 cut(s) 195
SfuI TTCGAA 1 cut(s) 207
SinI GGWCC 2 cut(s) 109, 128
SlaI CTCGAG 1 cut(s) 195
SmaI CCCGGG 1 cut(s) 260
SmlI CTYRAG 2 cut(s) 195, 707
SmoI CTYRAG 2 cut(s) 195, 707
Sse8387I CCTGCAGG 1 cut(s) 477
Sse9I AATT 2 cut(s) 90, 203
SsiI CCGC 6 cut(s) 68, 84, 134, 172, 235, 278
SspMI CTAG 2 cut(s) 392, 578
StyD4I CCNGG 3 cut(s) 111, 257, 258
TaaI ACNGT 1 cut(s) 247
TaqI TCGA 5 cut(s) 196, 207, 241, 330, 338
TasI AATT 2 cut(s) 90, 203
TatI WGTACW 2 cut(s) 294, 711
TauI GCSGC 3 cut(s) 70, 86, 238
TfiI GAWTC 1 cut(s) 254
Tru1I TTAA 2 cut(s) 54, 519
Tru9I TTAA 2 cut(s) 54, 519
TscAI CASTG 1 cut(s) 313
TseI GCWGC 2 cut(s) 5, 671
TspDTI ATGAA 1 cut(s) 670
TspMI CCCGGG 1 cut(s) 258
TspRI CASTG 1 cut(s) 313
VpaK11BI GGWCC 2 cut(s) 109, 128
XapI RAATTY 2 cut(s) 90, 203
XhoI CTCGAG 1 cut(s) 195
XmaI CCCGGG 1 cut(s) 258
XmnI GAANNNNTTC 1 cut(s) 690
XspI CTAG 2 cut(s) 392, 578
ZrmI AGTACT 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.