Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013353

Physical Location & Seq

Genomic Coordinates Reverse (-)

23399112 .. 23402176

Gene Structure 3065 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G63100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1902 bp

ATGTTGGCAGGTTGTTCGAGTTCATCATTGTTGTCGCCTACTCGAAGATTGAGGAGTGAAGCAGTAGCAGCAACATCAGCAACAGTATCAGCGCATTTTCCCATGAACACACAGAGATTGGACTTACCATGCAGTAGTAGCTTCTCTCGCAAGGAAACTCCTTCTAGCAGACCACTTGGAAGAAGCATCTCTCTTGACAACAGCAACAACAACAACAACAAACCGATCGAGCGCAAGACGAAGACCAGTGGTTGTTCGCTTAAACAGAACATAAAGCTTCCACCTTTGGCAACAACAAGAGGAAATGGAGAAGGGTTTTCTTGGAACAACGACAACAACAACAGAGGGAAGAGTTTGAAGAGATTAGCTGAGGAGGACGAGTCTTGTTTGAGCAGAGCGAAGAGGACAAAATGCGAAAACGAAGGTGATGATGAGGAAAAGGTTTGCTTTGTGCCAAGTGAAGTCATTTCTCAGCCTTTACCAAACTGGGTTGATTCGGTGATTACGGAGCTAGCTGGTATAGGCGATAAGGACGTTGAGAGTAGCCTTCCTGCAGCAGTTAAGGAAGCATCTGGAGGATCATCTACAAGCGCATCATCCGAGAGTCGTAGCTTAAGCCATAGAGTACCAGAACCTACAAATGGCTCAAGGAATCCGTACTCACACCGCGGTGCAACAGAGGAAAGGACCACCGGAAACATCAACAACAACAACAACAGGAACGATTTGCAGAGGGATTTCGAGCTTGTCAATTTGCTTACGGGATGCTTAGACGCGATCAGATCAAGAAACATAGCAGCGATTAACCATTTCATTGCAAGAACCGGTGATCTTGCTTCTCCTAGAGGAAGAACACCAATGACTCGCCTCATAGCTTACTACATTGAAGCTTTGGCTCTAAGAGTGGCGCGTATGTGGCCTCACATCTTCCACATCGCACCCCCTCGTGAATTCGATAGAACTGTCGAAGATGAATCAGGAAATGCATTGAGGTTCTTGAATCAAGTAACCCCAATTCCAAAGTTCATTCATTTCACAGCCAACGAGATGTTACTCAGAGCATTTGAAGGGAAAGAGAGAGTTCACATTATTGACTTCGACATCAAGCAAGGTTTACAGTGGCCTAGCTTCTTCCAAAGCTTAGCTTCGAGAATAAATCCACCACACCATGTACGAATCACTGGGATCGGAGAATCGAAACTTGAGCTAAACGAAACCGGAGATCGCCTCCACGGATTTGCAGAGGCGATGAATCTTCAATTCGAGTTTCATCCTGTAGTTGATAGACTCGAAGACGTTAGACTATGGATGCTTCACGTCAAAGAAGGTGAATCAGTAGCTGTAAACTGTGTCATGCAGATGCACAAGACACTCTACGATGGAACCGGAGCAGCAATTAGGGATTTTTTGGGTTTAATCAGAAGCACAAACCCAATAGCTCTCGTTCTTGCGGAGCAAGAAGCAGAACACAACTCAGAGCAACTTGAGACACGAGTTTGTAACTCGCTAAAGTACTATTCAGCTATGTTTGATGCAATTCACACGAATCTTGCTACAGATAGCTTAATGAGAGTCAAAGTTGAGGAGATGTTGTTTGGGAGAGAGATCAGGAACATTGTTGCGTGTGAAGGAAGTCATAGACAAGAGAGGCATGTGGGTTTTCGTCATTGGAGGAGGATGTTGGAGCAGTTAGGGTTTCGGAGTCTTGGAGTCTCGGAGAGAGAGGTTTTGCAGAGTAAGATGTTGCTTAGGATGTACGGATCTGATAATGAAGGGTTTTTCAATGTGGAGAGGAGCGATGAAGACAACGGCGGTGAAGGCGGACGCGGCGGTGGAGTTACTTTACGGTGGTCGGAGCAGCCACTTTATACGATCTCGGCTTGGACTACCGGAGGGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009966 GO:0009967 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1900457 GO:1900459 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAS

Protein Analysis

633

Amino Acids

70.79

Weight (kDa)

6.7

Isoelectric Point (pI)

52.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GRAS	PF03514	274 - 654	5.3e-130	GRAS domain family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63100 AT1G63100
fragaria_vesca	FvH4_5g01550
malus_domestica	MD04G1066800.v1.1 MD06G1073500.v1.1
prunus_persica	Prupe.5G091700_v2.0.a1
pyrus_communis	pycom04g06010 pycom06g07270
rosa_chinensis	RchiOBHm_Chr7g0199131
rosa_laevigata	RLG00000003812
rosa_multiflora	Rmu_sc0006266.1_g000052
rosa_roxburghii	Rroxscaffold_3G00257050
rosa_rugosa	Rorug07G0052900
rosa_samantha	Rh7AG176400 Rh7BG179900 Rh7CG185500 Rh7DG179400
rosa_wichuraiana	Rw7G015510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	669, 776, 910, 1827
AciI	CCGC	7 cut(s)	667, 669, 1451, 1812, 1821, 1827, 1830
AclWI	GGATC	3 cut(s)	586, 1193, 1768
AcsI	RAATTY	1 cut(s)	950
AfaI	GTAC	5 cut(s)	627, 659, 1173, 1514, 1757
AfiI	CCNNNNNNNGG	1 cut(s)	641
AflII	CTTAAG	1 cut(s)	613
AgeI	ACCGGT	1 cut(s)	824
AgsI	TTSAA	6 cut(s)	358, 887, 1000, 1067, 1259, 1783
AjiI	CACGTC	1 cut(s)	1318
AleI	CACNNNNGTG	1 cut(s)	669
Alw26I	GTCTC	2 cut(s)	1481, 1717
AlwI	GGATC	3 cut(s)	586, 1193, 1768
AlwNI	CAGNNNCTG	1 cut(s)	1340
AoxI	GGCC	2 cut(s)	917, 1121
ApeKI	GCWGC	5 cut(s)	68, 554, 797, 1391, 1858
ApoI	RAATTY	1 cut(s)	950
AsiGI	ACCGGT	1 cut(s)	824
AspLEI	GCGC	4 cut(s)	94, 234, 593, 910
AspS9I	GGNCC	1 cut(s)	687
AsuHPI	GGTGA	5 cut(s)	437, 511, 839, 1340, 1826
AsuNHI	GCTAGC	1 cut(s)	511
AvaII	GGWCC	1 cut(s)	687
BauI	CACGAG	2 cut(s)	945, 1491
BbsI	GAAGAC	3 cut(s)	248, 1299, 1809
BbvCI	CCTCAGC	1 cut(s)	369
BbvI	GCAGC	5 cut(s)	80, 566, 809, 1403, 1870
BccI	CCATC	1 cut(s)	1373
BceAI	ACGGC	1 cut(s)	1825
BcgI	CGANNNNNNTGC	1 cut(s)	31
BcoDI	GTCTC	2 cut(s)	1481, 1717
BfaI	CTAG	4 cut(s)	165, 512, 843, 1125
BfmI	CTRYAG	3 cut(s)	552, 1275, 1554
BfrI	CTTAAG	1 cut(s)	613
BisI	GCNGC	6 cut(s)	69, 555, 798, 1392, 1828, 1859
BlpI	GCTNAGC	1 cut(s)	1141
BlsI	GCNGC	6 cut(s)	70, 556, 799, 1393, 1829, 1860
BmcAI	AGTACT	1 cut(s)	1514
Bme18I	GGWCC	1 cut(s)	687
BmgBI	CACGTC	1 cut(s)	1318
BmgT120I	GGNCC	1 cut(s)	687
BmiI	GGNNCC	1 cut(s)	1384
BmrI	ACTGGG	2 cut(s)	496, 1191
BmsI	GCATC	7 cut(s)	195, 578, 602, 755, 1299, 1350, 1522
BmtI	GCTAGC	1 cut(s)	515
BmuI	ACTGGG	2 cut(s)	496, 1191
BpiI	GAAGAC	3 cut(s)	248, 1299, 1809
BplI	GAGNNNNNCTC	2 cut(s)	1212, 1244
BpmI	CTGGAG	1 cut(s)	594
Bpu10I	CCTNAGC	2 cut(s)	369, 1748
Bpu1102I	GCTNAGC	1 cut(s)	1141
BpuEI	CTTGAG	3 cut(s)	631, 1223, 1505
BsaJI	CCNNGG	2 cut(s)	667, 1231
BsaWI	WCCGGW	5 cut(s)	692, 824, 1217, 1385, 1889
BsaXI	ACNNNNNCTCC	4 cut(s)	365, 395, 1577, 1607
Bsc4I	CCNNNNNNNGG	1 cut(s)	641
Bse118I	RCCGGY	1 cut(s)	824
Bse1I	ACTGG	3 cut(s)	246, 491, 1186
Bse3DI	GCAATG	1 cut(s)	813
BseDI	CCNNGG	2 cut(s)	667, 1231
BseGI	GGATG	6 cut(s)	596, 770, 1270, 1314, 1683, 1758
BseLI	CCNNNNNNNGG	1 cut(s)	641
BseMI	GCAATG	1 cut(s)	813
BseMII	CTCAG	4 cut(s)	360, 485, 1069, 1488
BseNI	ACTGG	3 cut(s)	246, 491, 1186
BseRI	GAGGAG	5 cut(s)	67, 386, 1598, 1687, 1807
BseXI	GCAGC	5 cut(s)	80, 566, 809, 1403, 1870
Bsh1236I	CGCG	4 cut(s)	669, 776, 910, 1827
Bsh1285I	CGRYCG	1 cut(s)	228
BshFI	GGCC	2 cut(s)	919, 1123
BshTI	ACCGGT	1 cut(s)	824
BsiEI	CGRYCG	1 cut(s)	228
BsiSI	CCGG	5 cut(s)	693, 825, 1218, 1386, 1890
BslI	CCNNNNNNNGG	1 cut(s)	641
BsmAI	GTCTC	2 cut(s)	1481, 1717
BsnI	GGCC	2 cut(s)	919, 1123
Bsp1720I	GCTNAGC	1 cut(s)	1141
BspACI	CCGC	7 cut(s)	667, 669, 1451, 1812, 1821, 1827, 1830
BspANI	GGCC	2 cut(s)	919, 1123
BspCNI	CTCAG	4 cut(s)	361, 484, 1068, 1487
BspFNI	CGCG	4 cut(s)	669, 776, 910, 1827
BspLI	GGNNCC	1 cut(s)	1384
BspMAI	CTGCAG	1 cut(s)	556
BspOI	GCTAGC	1 cut(s)	515
BspPI	GGATC	3 cut(s)	586, 1193, 1768
BspTI	CTTAAG	1 cut(s)	613
BsrDI	GCAATG	1 cut(s)	813
BsrFI	RCCGGY	1 cut(s)	824
BsrI	ACTGG	3 cut(s)	246, 491, 1186
BssAI	RCCGGY	1 cut(s)	824
BssECI	CCNNGG	2 cut(s)	667, 1231
BssSI	CACGAG	2 cut(s)	945, 1491
Bst2BI	CACGAG	2 cut(s)	945, 1491
Bst4CI	ACNGT	5 cut(s)	85, 964, 1119, 1349, 1848
Bst6I	CTCTTC	3 cut(s)	344, 353, 395
BstAFI	CTTAAG	1 cut(s)	613
BstC8I	GCNNGC	1 cut(s)	513
BstDEI	CTNAG	8 cut(s)	369, 471, 769, 899, 1055, 1141, 1474, 1748
BstDSI	CCRYGG	2 cut(s)	667, 1231
BstF5I	GGATG	6 cut(s)	596, 770, 1270, 1314, 1683, 1758
BstFNI	CGCG	4 cut(s)	669, 776, 910, 1827
BstHHI	GCGC	4 cut(s)	94, 234, 593, 910
BstMAI	GTCTC	2 cut(s)	1481, 1717
BstMCI	CGRYCG	1 cut(s)	228
BstMWI	GCNNNNNNNGC	7 cut(s)	68, 77, 138, 147, 916, 1818, 1827
BstNSI	RCATGY	1 cut(s)	1655
BstSFI	CTRYAG	3 cut(s)	552, 1275, 1554
BstUI	CGCG	4 cut(s)	669, 776, 910, 1827
BstV1I	GCAGC	5 cut(s)	80, 566, 809, 1403, 1870
BstV2I	GAAGAC	3 cut(s)	248, 1299, 1809
BstX2I	RGATCY	1 cut(s)	1760
BstYI	RGATCY	1 cut(s)	1760
BsuRI	GGCC	2 cut(s)	919, 1123
BtgI	CCRYGG	2 cut(s)	667, 1231
BtgZI	GCGATG	3 cut(s)	919, 1262, 1812
BtrI	CACGTC	1 cut(s)	1318
BtsCI	GGATG	6 cut(s)	596, 770, 1270, 1314, 1683, 1758
BtsIMutI	CAGTG	3 cut(s)	253, 1124, 1179
Cac8I	GCNNGC	1 cut(s)	513
CaiI	CAGNNNCTG	1 cut(s)	1340
CfoI	GCGC	4 cut(s)	94, 234, 593, 910
Cfr10I	RCCGGY	1 cut(s)	824
Cfr13I	GGNCC	1 cut(s)	687
Cfr42I	CCGCGG	1 cut(s)	670
CseI	GACGC	2 cut(s)	782, 1833
Csp6I	GTAC	5 cut(s)	626, 658, 1172, 1513, 1756
CspAI	ACCGGT	1 cut(s)	824
CviAII	CATG	5 cut(s)	103, 129, 1169, 1354, 1652
CviQI	GTAC	5 cut(s)	626, 658, 1172, 1513, 1756
DdeI	CTNAG	8 cut(s)	369, 471, 769, 899, 1055, 1141, 1474, 1748
Eam1104I	CTCTTC	3 cut(s)	344, 353, 395
EarI	CTCTTC	3 cut(s)	344, 353, 395
EciI	GGCGGA	1 cut(s)	1836
Eco47I	GGWCC	1 cut(s)	687
EcoRI	GAATTC	1 cut(s)	950
EcoT22I	ATGCAT	1 cut(s)	988
FaeI	CATG	5 cut(s)	106, 132, 1172, 1357, 1655
FalI	AAGNNNNNCTT	4 cut(s)	431, 463, 1129, 1161
FatI	CATG	5 cut(s)	102, 128, 1168, 1353, 1651
Fnu4HI	GCNGC	6 cut(s)	69, 555, 798, 1392, 1828, 1859
FokI	GGATG	6 cut(s)	583, 777, 1257, 1321, 1690, 1765
Fsp4HI	GCNGC	6 cut(s)	69, 555, 798, 1392, 1828, 1859
FspBI	CTAG	4 cut(s)	165, 512, 843, 1125
GlaI	GCGC	4 cut(s)	93, 233, 592, 909
GluI	GCNGC	6 cut(s)	69, 555, 798, 1392, 1828, 1859
GsuI	CTGGAG	1 cut(s)	594
HaeIII	GGCC	2 cut(s)	919, 1123
HapII	CCGG	5 cut(s)	693, 825, 1218, 1386, 1890
HgaI	GACGC	2 cut(s)	782, 1833
HhaI	GCGC	4 cut(s)	94, 234, 593, 910
Hin1II	CATG	5 cut(s)	106, 132, 1172, 1357, 1655
Hin6I	GCGC	4 cut(s)	92, 232, 591, 908
HinP1I	GCGC	4 cut(s)	92, 232, 591, 908
HindIII	AAGCTT	3 cut(s)	275, 888, 1138
HpaII	CCGG	5 cut(s)	693, 825, 1218, 1386, 1890
HphI	GGTGA	5 cut(s)	437, 511, 839, 1340, 1826
Hpy166II	GTNNAC	3 cut(s)	1084, 1115, 1345
Hpy188III	TCNNGA	8 cut(s)	194, 573, 786, 947, 978, 997, 1149, 1609
Hpy8I	GTNNAC	3 cut(s)	1084, 1115, 1345
HpyAV	CCTTC	9 cut(s)	171, 305, 416, 557, 1061, 1319, 1622, 1766, 1811
HpyCH4III	ACNGT	5 cut(s)	85, 964, 1119, 1349, 1848
HpyCH4IV	ACGT	3 cut(s)	534, 1296, 1317
HpyF10VI	GCNNNNNNNGC	7 cut(s)	68, 77, 138, 147, 916, 1818, 1827
HpyF3I	CTNAG	8 cut(s)	369, 471, 769, 899, 1055, 1141, 1474, 1748
HpySE526I	ACGT	3 cut(s)	534, 1296, 1317
Hsp92II	CATG	5 cut(s)	106, 132, 1172, 1357, 1655
HspAI	GCGC	4 cut(s)	92, 232, 591, 908
KspI	CCGCGG	1 cut(s)	670
LmnI	GCTCC	6 cut(s)	508, 1388, 1453, 1684, 1794, 1855
Lsp1109I	GCAGC	5 cut(s)	80, 566, 809, 1403, 1870
LweI	GCATC	7 cut(s)	195, 578, 602, 755, 1299, 1350, 1522
MaeI	CTAG	4 cut(s)	165, 512, 843, 1125
MaeII	ACGT	3 cut(s)	534, 1296, 1317
MaeIII	GTNAC	4 cut(s)	1006, 1050, 1499, 1837
MflI	RGATCY	1 cut(s)	1760
MluCI	AATT	7 cut(s)	751, 950, 1014, 1259, 1395, 1536, 1897
MlyI	GAGTC	7 cut(s)	389, 613, 856, 1281, 1581, 1711, 1719
MmeI	TCCRAC	2 cut(s)	1662, 1833
Mph1103I	ATGCAT	1 cut(s)	988
MseI	TTAA	7 cut(s)	261, 561, 614, 804, 1415, 1565, 1900
MslI	CAYNNNNRTG	2 cut(s)	669, 1358
MspA1I	CMGCKG	1 cut(s)	669
MspCI	CTTAAG	1 cut(s)	613
MspI	CCGG	5 cut(s)	693, 825, 1218, 1386, 1890
MvnI	CGCG	4 cut(s)	669, 776, 910, 1827
MwoI	GCNNNNNNNGC	7 cut(s)	68, 77, 138, 147, 916, 1818, 1827
NheI	GCTAGC	1 cut(s)	511
NlaIII	CATG	5 cut(s)	106, 132, 1172, 1357, 1655
NlaIV	GGNNCC	1 cut(s)	1384
NmeAIII	GCCGAG	1 cut(s)	1856
NsiI	ATGCAT	1 cut(s)	988
NspI	RCATGY	1 cut(s)	1655
OliI	CACNNNNGTG	1 cut(s)	669
PfeI	GAWTC	9 cut(s)	494, 652, 974, 1000, 1176, 1193, 1252, 1331, 1546
PinAI	ACCGGT	1 cut(s)	824
PkrI	GCNGC	6 cut(s)	70, 556, 799, 1393, 1829, 1860
Ple19I	CGATCG	1 cut(s)	228
PleI	GAGTC	7 cut(s)	388, 612, 856, 1281, 1580, 1710, 1718
PpsI	GAGTC	7 cut(s)	388, 612, 856, 1281, 1580, 1710, 1718
PspN4I	GGNNCC	1 cut(s)	1384
PspPI	GGNCC	1 cut(s)	687
PstI	CTGCAG	1 cut(s)	556
PstNI	CAGNNNCTG	1 cut(s)	1340
PsuI	RGATCY	1 cut(s)	1760
PvuI	CGATCG	1 cut(s)	228
RsaI	GTAC	5 cut(s)	627, 659, 1173, 1514, 1757
RsaNI	GTAC	5 cut(s)	626, 658, 1172, 1513, 1756
RseI	CAYNNNNRTG	2 cut(s)	669, 1358
SacII	CCGCGG	1 cut(s)	670
SaqAI	TTAA	7 cut(s)	261, 561, 614, 804, 1415, 1565, 1900
SatI	GCNGC	6 cut(s)	69, 555, 798, 1392, 1828, 1859
Sau96I	GGNCC	1 cut(s)	687
ScaI	AGTACT	1 cut(s)	1514
SchI	GAGTC	7 cut(s)	389, 613, 856, 1281, 1581, 1711, 1719
SfaNI	GCATC	7 cut(s)	195, 578, 602, 755, 1299, 1350, 1522
SfcI	CTRYAG	3 cut(s)	552, 1275, 1554
Sfr303I	CCGCGG	1 cut(s)	670
SgrBI	CCGCGG	1 cut(s)	670
SinI	GGWCC	1 cut(s)	687
SmiMI	CAYNNNNRTG	2 cut(s)	669, 1358
SmlI	CTYRAG	4 cut(s)	613, 646, 1202, 1484
SmoI	CTYRAG	4 cut(s)	613, 646, 1202, 1484
Sse9I	AATT	7 cut(s)	751, 950, 1014, 1259, 1395, 1536, 1897
SsiI	CCGC	7 cut(s)	667, 669, 1451, 1812, 1821, 1827, 1830
SspMI	CTAG	4 cut(s)	165, 512, 843, 1125
TaaI	ACNGT	5 cut(s)	85, 964, 1119, 1349, 1848
TaiI	ACGT	3 cut(s)	537, 1299, 1320
TasI	AATT	7 cut(s)	751, 950, 1014, 1259, 1395, 1536, 1897
TatI	WGTACW	1 cut(s)	1512
TauI	GCSGC	1 cut(s)	1830
TfiI	GAWTC	9 cut(s)	494, 652, 974, 1000, 1176, 1193, 1252, 1331, 1546
Tru1I	TTAA	7 cut(s)	261, 561, 614, 804, 1415, 1565, 1900
Tru9I	TTAA	7 cut(s)	261, 561, 614, 804, 1415, 1565, 1900
TscAI	CASTG	3 cut(s)	253, 1124, 1186
TseI	GCWGC	5 cut(s)	68, 554, 797, 1391, 1858
TspGWI	ACGGA	4 cut(s)	521, 645, 1248, 1773
TspRI	CASTG	3 cut(s)	253, 1124, 1186
Vha464I	CTTAAG	1 cut(s)	613
VpaK11BI	GGWCC	1 cut(s)	687
XapI	RAATTY	1 cut(s)	950
XceI	RCATGY	1 cut(s)	1655
XspI	CTAG	4 cut(s)	165, 512, 843, 1125
ZrmI	AGTACT	1 cut(s)	1514
Zsp2I	ATGCAT	1 cut(s)	988

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.