Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0007539

Physical Location & Seq

Genomic Coordinates Forward (+)

3761740 .. 3765294

Gene Structure 3555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0052900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGAATCTGCGAATGAGAAAATAACGTCAAGCCCATCTTGCTACCCATTACCATCATCTTCAGACCATTTGCAAGCAGCCCCCGAAAGCAAAGGCATAGGGATTTCGGACCCGAGATTAAATCAGACAGTTACAGATGCTGGTGAGATTGCATCTGCAGGCAAAGGCTTAAGCCCCAAGACCCCTGCAAGTACAAGTACTTCTGGCCCTCTGGAAGTTGATGTGGGCAATGTTGTAGCAACTTCGGAAAATGGTCTTGCAACGACTCCGTCCCCTGCTGGCTCTCTTCTAAGTACAAACTACACCGATGAGGATTTTCAAGGCGGCTCGACACCTAAGACTGAGCAGCTTAATGGTGAGTTGAGCCAGGGCAATGATTCAGCAACACAGTCGCCTCCTACGCAGGTGATGGAGCGGCCTAGTGAGCCGAGTACTCCGTACAGGATCCCGGATTATGTCTTTGCAAGGAAACCATCCACAGCCCCGATGGAATGGAGTGCTGCTTCCAATGAATCCCTATTCAGCATTCAGATGGGTAACATGAGTTTCACCAGAGAACAGTTTGCCTTTTTAGGTAAATCTGGTGAGTTGGGTTTATCTGGAGAACAGAACATGTCTGGTCCATATATAGACTTCTCGAGTAACCAGCCTCCGGATAAGCAAGTTGAATTTTCCCAAAACGGCGGCAATTTGGATGAGGGCCCAAATCCGAAAGTAACTGAAGCAAAAGCCGTAGAGACTATGAGAGAGGTTATAAGGGAAATTGCCGAAAATGACAACAAAGCAAGTCCATCATCTTCGGCGGATAATCACAGCAAAGGAAGCCCGTCGCCCAGCGTCCGAAATCCTATAGTCAGCCCATCCCTCACTGAACACAAGTTTCATAATATATCTAGCCTTTCTCATGCTTCTGATGGAAGTACTAAATCATTTGCATTTCCAGTATTGTCAGGTGAGGAGAGAAGTGGTTCACTGAGGGTAGATGGAGTAGGGAAGCAAAAGCAACATTCGCCACGAAGAGGCTCACGGCCACAAACACCTAAAGAAAGCAGGAAGCCGAATGCTGCATCTCAGAGCCCGAAATCAGCCCTGACCCCGAAATCAGCCCTGACCCCGATTAAGCACAAATGGCTATCTTGCTCTTGCTGCCCATTCTGTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FA_desaturase

Protein Analysis

387

Amino Acids

40.96

Weight (kDa)

5.74

Isoelectric Point (pI)

54.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007539)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g16180
rosa_chinensis	RchiOBHm_Chr2g0158081 RchiOBHm_Chr2g0159461 RchiOBHm_Chr4g0425021
rosa_laevigata	RLG00000015820
rosa_multiflora	Rmu_co8373497.1_g000001 Rmu_sc0005982.1_g000015 Rmu_sc0033090.1_g000001 Rmu_ssc0000187.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056800 Rroxscaffold_2G00091620 Rroxscaffold_4G00310500 Rroxscaffold_4G00310510
rosa_rugosa	Rorug07G0052900
rosa_samantha	Rh1AG184500 Rh2BG024500 Rh2BG555100 Rh2DG024600 Rh5AG004400 Rh5BG005900 Rh5CG004800 Rh5DG004800 Rh7BG180000 Rh7BG295000
rosa_wichuraiana	Rw2G043980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	755
AarI	CACCTGC	1 cut(s)	394
Acc36I	ACCTGC	1 cut(s)	394
AccBSI	CCGCTC	1 cut(s)	415
AccIII	TCCGGA	1 cut(s)	652
AciI	CCGC	4 cut(s)	324, 415, 684, 803
AclWI	GGATC	2 cut(s)	439, 452
AcoI	YGGCCR	1 cut(s)	1028
AcsI	RAATTY	1 cut(s)	668
AcuI	CTGAAG	2 cut(s)	45, 741
AfaI	GTAC	6 cut(s)	193, 199, 295, 433, 440, 922
AfiI	CCNNNNNNNGG	2 cut(s)	652, 1019
AflII	CTTAAG	1 cut(s)	169
AflIII	ACRYGT	1 cut(s)	612
AgsI	TTSAA	2 cut(s)	320, 668
AjnI	CCWGG	1 cut(s)	366
AluBI	AGCT	1 cut(s)	349
AluI	AGCT	1 cut(s)	349
Alw26I	GTCTC	1 cut(s)	731
AlwI	GGATC	2 cut(s)	439, 452
AlwNI	CAGNNNCTG	1 cut(s)	140
Ama87I	CYCGRG	2 cut(s)	112, 637
Aor13HI	TCCGGA	1 cut(s)	652
AoxI	GGCC	4 cut(s)	205, 416, 700, 1028
ApaI	GGGCCC	1 cut(s)	704
ApeKI	GCWGC	5 cut(s)	77, 346, 500, 1064, 1146
ApoI	RAATTY	1 cut(s)	668
Asp700I	GAANNNNTTC	1 cut(s)	967
AspS9I	GGNCC	5 cut(s)	109, 206, 620, 700, 701
AsuC2I	CCSGG	1 cut(s)	449
AsuHPI	GGTGA	6 cut(s)	155, 368, 418, 541, 596, 965
AvaI	CYCGRG	2 cut(s)	112, 637
AvaII	GGWCC	2 cut(s)	109, 620
BaeGI	GKGCMC	1 cut(s)	704
BamHI	GGATCC	1 cut(s)	444
BanII	GRGCYC	2 cut(s)	704, 1079
BarI	GAAGNNNNNNTAC	2 cut(s)	184, 216
BbvI	GCAGC	5 cut(s)	89, 358, 487, 1051, 1133
BceAI	ACGGC	3 cut(s)	697, 716, 1043
BcgI	CGANNNNNNTGC	2 cut(s)	372, 406
BciT130I	CCWGG	1 cut(s)	368
BcnI	CCSGG	1 cut(s)	449
BcoDI	GTCTC	1 cut(s)	731
BfaI	CTAG	2 cut(s)	420, 894
BfmI	CTRYAG	2 cut(s)	156, 849
BfrI	CTTAAG	1 cut(s)	169
BfuAI	ACCTGC	1 cut(s)	394
BisI	GCNGC	8 cut(s)	78, 325, 347, 416, 501, 685, 1065, 1147
BlsI	GCNGC	8 cut(s)	79, 326, 348, 417, 502, 686, 1066, 1148
BmcAI	AGTACT	3 cut(s)	199, 433, 922
Bme1390I	CCNGG	2 cut(s)	368, 449
Bme18I	GGWCC	2 cut(s)	109, 620
BmeT110I	CYCGRG	2 cut(s)	112, 637
BmgT120I	GGNCC	5 cut(s)	109, 206, 620, 700, 701
BmiI	GGNNCC	3 cut(s)	111, 446, 702
BmrFI	CCNGG	2 cut(s)	368, 449
BmsI	GCATC	3 cut(s)	127, 161, 1076
BpmI	CTGGAG	1 cut(s)	621
BpuMI	CCSGG	1 cut(s)	449
BsaJI	CCNNGG	1 cut(s)	367
BsaWI	WCCGGW	1 cut(s)	652
Bsc4I	CCNNNNNNNGG	2 cut(s)	652, 1019
Bse1I	ACTGG	1 cut(s)	941
Bse3DI	GCAATG	2 cut(s)	235, 379
BseAI	TCCGGA	1 cut(s)	652
BseBI	CCWGG	1 cut(s)	368
BseDI	CCNNGG	1 cut(s)	367
BseGI	GGATG	3 cut(s)	473, 700, 860
BseLI	CCNNNNNNNGG	2 cut(s)	652, 1019
BseMI	GCAATG	2 cut(s)	235, 379
BseMII	CTCAG	3 cut(s)	333, 965, 1085
BseNI	ACTGG	1 cut(s)	941
BseRI	GAGGAG	1 cut(s)	971
BseSI	GKGCMC	1 cut(s)	704
BseXI	GCAGC	5 cut(s)	89, 358, 487, 1051, 1133
BseYI	CCCAGC	1 cut(s)	833
BshFI	GGCC	4 cut(s)	207, 418, 702, 1030
BsiHKCI	CYCGRG	2 cut(s)	112, 637
BsiSI	CCGG	2 cut(s)	449, 653
BslFI	GGGAC	1 cut(s)	256
BslI	CCNNNNNNNGG	2 cut(s)	652, 1019
BsmAI	GTCTC	1 cut(s)	731
BsmFI	GGGAC	1 cut(s)	256
BsmI	GAATGC	2 cut(s)	525, 1066
BsnI	GGCC	4 cut(s)	207, 418, 702, 1030
BsoBI	CYCGRG	2 cut(s)	112, 637
Bsp120I	GGGCCC	1 cut(s)	700
Bsp1286I	GDGCHC	2 cut(s)	704, 1079
Bsp13I	TCCGGA	1 cut(s)	652
Bsp143I	GATC	1 cut(s)	444
BspACI	CCGC	4 cut(s)	324, 415, 684, 803
BspANI	GGCC	4 cut(s)	207, 418, 702, 1030
BspCNI	CTCAG	3 cut(s)	334, 966, 1084
BspEI	TCCGGA	1 cut(s)	652
BspLI	GGNNCC	3 cut(s)	111, 446, 702
BspMAI	CTGCAG	1 cut(s)	160
BspMI	ACCTGC	1 cut(s)	394
BspPI	GGATC	2 cut(s)	439, 452
BspTI	CTTAAG	1 cut(s)	169
BsrBI	CCGCTC	1 cut(s)	415
BsrDI	GCAATG	2 cut(s)	235, 379
BsrI	ACTGG	1 cut(s)	941
BssECI	CCNNGG	1 cut(s)	367
BssMI	GATC	1 cut(s)	444
Bst2UI	CCWGG	1 cut(s)	368
Bst4CI	ACNGT	3 cut(s)	130, 390, 561
Bst6I	CTCTTC	2 cut(s)	291, 1012
BstAFI	CTTAAG	1 cut(s)	169
BstC8I	GCNNGC	3 cut(s)	75, 160, 280
BstDEI	CTNAG	5 cut(s)	290, 336, 342, 974, 1071
BstF5I	GGATG	3 cut(s)	473, 700, 860
BstKTI	GATC	1 cut(s)	447
BstMAI	GTCTC	1 cut(s)	731
BstMBI	GATC	1 cut(s)	444
BstMWI	GCNNNNNNNGC	7 cut(s)	39, 400, 424, 822, 1009, 1129, 1146
BstNI	CCWGG	1 cut(s)	368
BstNSI	RCATGY	1 cut(s)	616
BstSCI	CCNGG	2 cut(s)	366, 447
BstSFI	CTRYAG	2 cut(s)	156, 849
BstSLI	GKGCMC	1 cut(s)	704
BstV1I	GCAGC	5 cut(s)	89, 358, 487, 1051, 1133
BstX2I	RGATCY	1 cut(s)	444
BstYI	RGATCY	1 cut(s)	444
BsuRI	GGCC	4 cut(s)	207, 418, 702, 1030
BtsCI	GGATG	3 cut(s)	473, 700, 860
BtsIMutI	CAGTG	2 cut(s)	867, 971
BveI	ACCTGC	1 cut(s)	394
Cac8I	GCNNGC	3 cut(s)	75, 160, 280
CaiI	CAGNNNCTG	1 cut(s)	140
Cfr13I	GGNCC	5 cut(s)	109, 206, 620, 700, 701
CseI	GACGC	1 cut(s)	826
Csp6I	GTAC	6 cut(s)	192, 198, 294, 432, 439, 921
CviAII	CATG	3 cut(s)	541, 613, 905
CviQI	GTAC	6 cut(s)	192, 198, 294, 432, 439, 921
DdeI	CTNAG	5 cut(s)	290, 336, 342, 974, 1071
DpnI	GATC	1 cut(s)	446
DpnII	GATC	1 cut(s)	444
EaeI	YGGCCR	1 cut(s)	1028
Eam1104I	CTCTTC	2 cut(s)	291, 1012
EarI	CTCTTC	2 cut(s)	291, 1012
EciI	GGCGGA	1 cut(s)	818
Eco24I	GRGCYC	2 cut(s)	704, 1079
Eco47I	GGWCC	2 cut(s)	109, 620
Eco57I	CTGAAG	2 cut(s)	45, 741
Eco88I	CYCGRG	2 cut(s)	112, 637
EcoO109I	RGGNCCY	1 cut(s)	700
EcoRII	CCWGG	1 cut(s)	366
EcoT38I	GRGCYC	2 cut(s)	704, 1079
FaeI	CATG	3 cut(s)	544, 616, 908
FalI	AAGNNNNNCTT	2 cut(s)	22, 54
FaqI	GGGAC	1 cut(s)	256
FatI	CATG	3 cut(s)	540, 612, 904
Fnu4HI	GCNGC	8 cut(s)	78, 325, 347, 416, 501, 685, 1065, 1147
FokI	GGATG	3 cut(s)	460, 707, 847
FriOI	GRGCYC	2 cut(s)	704, 1079
Fsp4HI	GCNGC	8 cut(s)	78, 325, 347, 416, 501, 685, 1065, 1147
FspBI	CTAG	2 cut(s)	420, 894
GluI	GCNGC	8 cut(s)	78, 325, 347, 416, 501, 685, 1065, 1147
GsaI	CCCAGC	1 cut(s)	837
GsuI	CTGGAG	1 cut(s)	621
HaeIII	GGCC	4 cut(s)	207, 418, 702, 1030
HapII	CCGG	2 cut(s)	449, 653
HgaI	GACGC	1 cut(s)	826
Hin1II	CATG	3 cut(s)	544, 616, 908
HinfI	GANTC	4 cut(s)	5, 265, 377, 512
HpaII	CCGG	2 cut(s)	449, 653
HphI	GGTGA	6 cut(s)	155, 368, 418, 541, 596, 965
Hpy166II	GTNNAC	1 cut(s)	971
Hpy188I	TCNGA	9 cut(s)	64, 109, 126, 247, 531, 711, 842, 913, 1074
Hpy188III	TCNNGA	4 cut(s)	212, 600, 637, 653
Hpy8I	GTNNAC	1 cut(s)	971
Hpy99I	CGWCG	1 cut(s)	832
HpyCH4III	ACNGT	3 cut(s)	130, 390, 561
HpyCH4IV	ACGT	1 cut(s)	26
HpyCH4V	TGCA	8 cut(s)	73, 152, 158, 188, 260, 464, 935, 1067
HpyF10VI	GCNNNNNNNGC	7 cut(s)	39, 400, 424, 822, 1009, 1129, 1146
HpyF3I	CTNAG	5 cut(s)	290, 336, 342, 974, 1071
HpySE526I	ACGT	1 cut(s)	26
Hsp92II	CATG	3 cut(s)	544, 616, 908
Kpn2I	TCCGGA	1 cut(s)	652
Kzo9I	GATC	1 cut(s)	444
LmnI	GCTCC	1 cut(s)	412
Lsp1109I	GCAGC	5 cut(s)	89, 358, 487, 1051, 1133
LweI	GCATC	3 cut(s)	127, 161, 1076
MaeI	CTAG	2 cut(s)	420, 894
MaeII	ACGT	1 cut(s)	26
MaeIII	GTNAC	5 cut(s)	130, 536, 641, 715, 1157
MalI	GATC	1 cut(s)	446
MbiI	CCGCTC	1 cut(s)	415
MboI	GATC	1 cut(s)	444
MboII	GAAGA	4 cut(s)	51, 278, 789, 1029
MflI	RGATCY	1 cut(s)	444
MhlI	GDGCHC	2 cut(s)	704, 1079
MluCI	AATT	3 cut(s)	668, 688, 762
MlyI	GAGTC	1 cut(s)	259
MroI	TCCGGA	1 cut(s)	652
MroXI	GAANNNNTTC	1 cut(s)	967
MseI	TTAA	4 cut(s)	119, 170, 351, 1119
MslI	CAYNNNNRTG	1 cut(s)	530
MspCI	CTTAAG	1 cut(s)	169
MspI	CCGG	2 cut(s)	449, 653
MspR9I	CCNGG	2 cut(s)	368, 449
Mva1269I	GAATGC	2 cut(s)	525, 1066
MvaI	CCWGG	1 cut(s)	368
MwoI	GCNNNNNNNGC	7 cut(s)	39, 400, 424, 822, 1009, 1129, 1146
NciI	CCSGG	1 cut(s)	449
NdeII	GATC	1 cut(s)	444
NlaIII	CATG	3 cut(s)	544, 616, 908
NlaIV	GGNNCC	3 cut(s)	111, 446, 702
NmeAIII	GCCGAG	1 cut(s)	453
NspI	RCATGY	1 cut(s)	616
PaeR7I	CTCGAG	1 cut(s)	637
PaqCI	CACCTGC	1 cut(s)	394
PciI	ACATGT	1 cut(s)	612
PctI	GAATGC	2 cut(s)	525, 1066
PdmI	GAANNNNTTC	1 cut(s)	967
PfeI	GAWTC	3 cut(s)	5, 377, 512
PflFI	GACNNNGTC	1 cut(s)	268
PfoI	TCCNGGA	1 cut(s)	447
PkrI	GCNGC	8 cut(s)	79, 326, 348, 417, 502, 686, 1066, 1148
PleI	GAGTC	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	259
PscI	ACATGT	1 cut(s)	612
PsiI	TTATAA	1 cut(s)	755
Psp6I	CCWGG	1 cut(s)	366
PspFI	CCCAGC	1 cut(s)	833
PspGI	CCWGG	1 cut(s)	366
PspN4I	GGNNCC	3 cut(s)	111, 446, 702
PspOMI	GGGCCC	1 cut(s)	700
PspPI	GGNCC	5 cut(s)	109, 206, 620, 700, 701
PstI	CTGCAG	1 cut(s)	160
PstNI	CAGNNNCTG	1 cut(s)	140
PsuI	RGATCY	1 cut(s)	444
PsyI	GACNNNGTC	1 cut(s)	268
RsaI	GTAC	6 cut(s)	193, 199, 295, 433, 440, 922
RsaNI	GTAC	6 cut(s)	192, 198, 294, 432, 439, 921
RseI	CAYNNNNRTG	1 cut(s)	530
SaqAI	TTAA	4 cut(s)	119, 170, 351, 1119
SatI	GCNGC	8 cut(s)	78, 325, 347, 416, 501, 685, 1065, 1147
Sau3AI	GATC	1 cut(s)	444
Sau96I	GGNCC	5 cut(s)	109, 206, 620, 700, 701
ScaI	AGTACT	3 cut(s)	199, 433, 922
SchI	GAGTC	1 cut(s)	259
ScrFI	CCNGG	2 cut(s)	368, 449
SduI	GDGCHC	2 cut(s)	704, 1079
SetI	ASST	8 cut(s)	29, 337, 351, 408, 577, 753, 955, 1042
SfaNI	GCATC	3 cut(s)	127, 161, 1076
SfcI	CTRYAG	2 cut(s)	156, 849
Sfr274I	CTCGAG	1 cut(s)	637
SinI	GGWCC	2 cut(s)	109, 620
SlaI	CTCGAG	1 cut(s)	637
SmiMI	CAYNNNNRTG	1 cut(s)	530
SmlI	CTYRAG	2 cut(s)	169, 637
SmoI	CTYRAG	2 cut(s)	169, 637
Sse9I	AATT	3 cut(s)	668, 688, 762
SsiI	CCGC	4 cut(s)	324, 415, 684, 803
SspMI	CTAG	2 cut(s)	420, 894
StyD4I	CCNGG	2 cut(s)	366, 447
TaaI	ACNGT	3 cut(s)	130, 390, 561
TaiI	ACGT	1 cut(s)	29
TaqI	TCGA	2 cut(s)	329, 638
TasI	AATT	3 cut(s)	668, 688, 762
TatI	WGTACW	5 cut(s)	191, 197, 293, 431, 920
TauI	GCSGC	3 cut(s)	327, 418, 687
TfiI	GAWTC	3 cut(s)	5, 377, 512
Tru1I	TTAA	4 cut(s)	119, 170, 351, 1119
Tru9I	TTAA	4 cut(s)	119, 170, 351, 1119
TscAI	CASTG	2 cut(s)	874, 978
TseI	GCWGC	5 cut(s)	77, 346, 500, 1064, 1146
TspDTI	ATGAA	2 cut(s)	525, 872
TspGWI	ACGGA	2 cut(s)	258, 426
TspRI	CASTG	2 cut(s)	874, 978
Tth111I	GACNNNGTC	1 cut(s)	268
Vha464I	CTTAAG	1 cut(s)	169
VpaK11BI	GGWCC	2 cut(s)	109, 620
XapI	RAATTY	1 cut(s)	668
XceI	RCATGY	1 cut(s)	616
XcmI	CCANNNNNNNNNTGG	1 cut(s)	484
XhoI	CTCGAG	1 cut(s)	637
XmnI	GAANNNNTTC	1 cut(s)	967
XspI	CTAG	2 cut(s)	420, 894
ZrmI	AGTACT	3 cut(s)	199, 433, 922

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.