Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0007539

Physical Location & Seq

Genomic Coordinates Forward (+)

70628314 .. 70635398

Gene Structure 7085 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G043980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGAGTGTATCACATACATGCAGGTACTGTAGAATTTCCCATTTGAAAAGACAACCATACTATATATTTCTCCATTATACATACCATCTTCATTATGCTGCTCTTGGAGTTCTATTGTACTTTCTTGGAGGAATGCCCTTTATGGTTTGGAGAATGGGAGTGAGGATGGTACTTTATCTCCATGTTACATTTGGATTAAATTCAATTTGCCATACATGGGGACAACAAGTATGGGAAACTGGTGATTTATCAAGAAACAATGGTAGGATTTTGAAAATGTTATTTATCTACAAGTTCCTTGGATTGCTGGCACATGGAGAAGGTTGGCATAACAATCACCATGCTTTTCAGCACTCTGCTCGACACGGCTTGGAATGGTGGCAAATTGATGTTACTTGGTATGTCATAAGATTTCTTGAACTTGTGGCTTTGGCAACAGAAGTGAAGCTTCCAACTGAGACTCAGAAGAGACAAAGAGCCTTAAGAAACATGATGATCCACGAGGAAAAGCAGCAGCAGCTTGAAGCAAAAGTCCAAAATGGCAACCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FA_desaturase

Protein Analysis

183

Amino Acids

21.81

Weight (kDa)

9.57

Isoelectric Point (pI)

40.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007539)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g16180
rosa_chinensis	RchiOBHm_Chr2g0158081 RchiOBHm_Chr2g0159461 RchiOBHm_Chr4g0425021
rosa_laevigata	RLG00000015820
rosa_multiflora	Rmu_co8373497.1_g000001 Rmu_sc0005982.1_g000015 Rmu_sc0033090.1_g000001 Rmu_ssc0000187.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056800 Rroxscaffold_2G00091620 Rroxscaffold_4G00310500 Rroxscaffold_4G00310510
rosa_rugosa	Rorug07G0052900
rosa_samantha	Rh1AG184500 Rh2BG024500 Rh2BG555100 Rh2DG024600 Rh5AG004400 Rh5BG005900 Rh5CG004800 Rh5DG004800 Rh7BG180000 Rh7BG295000
rosa_wichuraiana	Rw2G043980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	12
AclWI	GGATC	1 cut(s)	490
AcsI	RAATTY	2 cut(s)	33, 199
AfaI	GTAC	3 cut(s)	26, 119, 171
AfiI	CCNNNNNNNGG	1 cut(s)	217
AflII	CTTAAG	1 cut(s)	481
AgsI	TTSAA	5 cut(s)	46, 204, 274, 419, 524
AluBI	AGCT	2 cut(s)	448, 520
AluI	AGCT	2 cut(s)	448, 520
Alw26I	GTCTC	2 cut(s)	452, 463
AlwI	GGATC	1 cut(s)	490
AlwNI	CAGNNNCTG	1 cut(s)	27
ApeKI	GCWGC	4 cut(s)	98, 511, 514, 517
ApoI	RAATTY	2 cut(s)	33, 199
AsuHPI	GGTGA	2 cut(s)	254, 329
BauI	CACGAG	1 cut(s)	500
BbvI	GCAGC	4 cut(s)	85, 523, 526, 529
BccI	CCATC	2 cut(s)	93, 160
BceAI	ACGGC	1 cut(s)	382
BcgI	CGANNNNNNTGC	2 cut(s)	341, 375
BcoDI	GTCTC	2 cut(s)	452, 463
BfmI	CTRYAG	1 cut(s)	28
BfrI	CTTAAG	1 cut(s)	481
BfuAI	ACCTGC	1 cut(s)	12
BisI	GCNGC	4 cut(s)	99, 512, 515, 518
BlsI	GCNGC	4 cut(s)	100, 513, 516, 519
BsaJI	CCNNGG	1 cut(s)	298
BsaXI	ACNNNNNCTCC	2 cut(s)	162, 192
Bsc4I	CCNNNNNNNGG	1 cut(s)	217
Bse1I	ACTGG	1 cut(s)	244
BseDI	CCNNGG	1 cut(s)	298
BseGI	GGATG	1 cut(s)	171
BseLI	CCNNNNNNNGG	1 cut(s)	217
BseMII	CTCAG	2 cut(s)	447, 476
BseNI	ACTGG	1 cut(s)	244
BseXI	GCAGC	4 cut(s)	85, 523, 526, 529
BslFI	GGGAC	1 cut(s)	234
BslI	CCNNNNNNNGG	1 cut(s)	217
BsmAI	GTCTC	2 cut(s)	452, 463
BsmFI	GGGAC	1 cut(s)	234
BsmI	GAATGC	1 cut(s)	138
Bsp143I	GATC	1 cut(s)	495
BspCNI	CTCAG	2 cut(s)	448, 475
BspMI	ACCTGC	1 cut(s)	12
BspPI	GGATC	1 cut(s)	490
BspTI	CTTAAG	1 cut(s)	481
BsrI	ACTGG	1 cut(s)	244
BssECI	CCNNGG	1 cut(s)	298
BssMI	GATC	1 cut(s)	495
BssSI	CACGAG	1 cut(s)	500
BssT1I	CCWWGG	1 cut(s)	298
Bst2BI	CACGAG	1 cut(s)	500
Bst4CI	ACNGT	1 cut(s)	29
Bst6I	CTCTTC	1 cut(s)	461
BstAFI	CTTAAG	1 cut(s)	481
BstC8I	GCNNGC	1 cut(s)	309
BstDEI	CTNAG	2 cut(s)	456, 462
BstF5I	GGATG	1 cut(s)	171
BstKTI	GATC	1 cut(s)	498
BstMAI	GTCTC	2 cut(s)	452, 463
BstMBI	GATC	1 cut(s)	495
BstMWI	GCNNNNNNNGC	1 cut(s)	517
BstNSI	RCATGY	1 cut(s)	21
BstSFI	CTRYAG	1 cut(s)	28
BstV1I	GCAGC	4 cut(s)	85, 523, 526, 529
BtsCI	GGATG	1 cut(s)	171
BveI	ACCTGC	1 cut(s)	12
Cac8I	GCNNGC	1 cut(s)	309
CaiI	CAGNNNCTG	1 cut(s)	27
Csp6I	GTAC	3 cut(s)	25, 118, 170
CviAII	CATG	6 cut(s)	18, 182, 216, 314, 341, 490
CviJI	RGCY	5 cut(s)	369, 428, 448, 479, 520
CviKI_1	RGCY	5 cut(s)	369, 428, 448, 479, 520
CviQI	GTAC	3 cut(s)	25, 118, 170
DdeI	CTNAG	2 cut(s)	456, 462
DpnI	GATC	1 cut(s)	497
DpnII	GATC	1 cut(s)	495
Eam1104I	CTCTTC	1 cut(s)	461
EarI	CTCTTC	1 cut(s)	461
Eco130I	CCWWGG	1 cut(s)	298
EcoT14I	CCWWGG	1 cut(s)	298
ErhI	CCWWGG	1 cut(s)	298
FaeI	CATG	6 cut(s)	21, 185, 219, 317, 344, 493
FalI	AAGNNNNNCTT	2 cut(s)	432, 464
FaqI	GGGAC	1 cut(s)	234
FatI	CATG	6 cut(s)	17, 181, 215, 313, 340, 489
Fnu4HI	GCNGC	4 cut(s)	99, 512, 515, 518
FokI	GGATG	1 cut(s)	178
Fsp4HI	GCNGC	4 cut(s)	99, 512, 515, 518
GluI	GCNGC	4 cut(s)	99, 512, 515, 518
Hin1II	CATG	6 cut(s)	21, 185, 219, 317, 344, 493
HindIII	AAGCTT	1 cut(s)	446
HinfI	GANTC	1 cut(s)	460
HphI	GGTGA	2 cut(s)	254, 329
Hpy188I	TCNGA	1 cut(s)	465
Hpy188III	TCNNGA	2 cut(s)	252, 416
HpyAV	CCTTC	1 cut(s)	314
HpyCH4III	ACNGT	1 cut(s)	29
HpyCH4V	TGCA	1 cut(s)	21
HpyF10VI	GCNNNNNNNGC	1 cut(s)	517
HpyF3I	CTNAG	2 cut(s)	456, 462
Hsp92II	CATG	6 cut(s)	21, 185, 219, 317, 344, 493
Kzo9I	GATC	1 cut(s)	495
LpnPI	CCDG	3 cut(s)	7, 225, 293
Lsp1109I	GCAGC	4 cut(s)	85, 523, 526, 529
MaeIII	GTNAC	2 cut(s)	184, 391
MalI	GATC	1 cut(s)	497
MboI	GATC	1 cut(s)	495
MboII	GAAGA	2 cut(s)	80, 478
MluCI	AATT	4 cut(s)	33, 199, 204, 384
MlyI	GAGTC	1 cut(s)	454
MmeI	TCCRAC	1 cut(s)	476
MnlI	CCTC	3 cut(s)	122, 156, 496
MseI	TTAA	2 cut(s)	197, 482
MslI	CAYNNNNRTG	1 cut(s)	16
MspCI	CTTAAG	1 cut(s)	481
Mva1269I	GAATGC	1 cut(s)	138
MwoI	GCNNNNNNNGC	1 cut(s)	517
NdeII	GATC	1 cut(s)	495
NlaIII	CATG	6 cut(s)	21, 185, 219, 317, 344, 493
NspI	RCATGY	1 cut(s)	21
PctI	GAATGC	1 cut(s)	138
PkrI	GCNGC	4 cut(s)	100, 513, 516, 519
PleI	GAGTC	1 cut(s)	454
PpsI	GAGTC	1 cut(s)	454
PstNI	CAGNNNCTG	1 cut(s)	27
RsaI	GTAC	3 cut(s)	26, 119, 171
RsaNI	GTAC	3 cut(s)	25, 118, 170
RseI	CAYNNNNRTG	1 cut(s)	16
SaqAI	TTAA	2 cut(s)	197, 482
SatI	GCNGC	4 cut(s)	99, 512, 515, 518
Sau3AI	GATC	1 cut(s)	495
SchI	GAGTC	1 cut(s)	454
SetI	ASST	5 cut(s)	26, 325, 450, 522, 549
SfcI	CTRYAG	1 cut(s)	28
SmiMI	CAYNNNNRTG	1 cut(s)	16
SmlI	CTYRAG	1 cut(s)	481
SmoI	CTYRAG	1 cut(s)	481
Sse9I	AATT	4 cut(s)	33, 199, 204, 384
StyI	CCWWGG	1 cut(s)	298
TaaI	ACNGT	1 cut(s)	29
TaqI	TCGA	1 cut(s)	361
TasI	AATT	4 cut(s)	33, 199, 204, 384
TatI	WGTACW	1 cut(s)	117
Tru1I	TTAA	2 cut(s)	197, 482
Tru9I	TTAA	2 cut(s)	197, 482
TseI	GCWGC	4 cut(s)	98, 511, 514, 517
TspDTI	ATGAA	1 cut(s)	80
Vha464I	CTTAAG	1 cut(s)	481
XapI	RAATTY	2 cut(s)	33, 199
XceI	RCATGY	1 cut(s)	21
XcmI	CCANNNNNNNNNTGG	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.