Rh5DG004800

Palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0007539
Physical Location & Seq
Reverse (-)
327044 .. 328964
1921 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG004800.1

Sequence Viewer

Length: 393 bp
ATGACGGGAACACTCTCAAGTAATCCATGTTGCGGTGTCGCCGGGTGTGAGGACAGTAGTTGGTTACCACGTGACTTTTTCTGTAAACTCGGTTTGTCACACATATGGGGAAAGCGAGTATGGGATACCGGTGATTTGTCTAGAAACAACTGGTTGTTGGCATTGCCTACACTTGGAGAAGGGTGGCACAATAACCACCACGCCTTTGATTACTCAACTCGACAGGGCCTCGAATGGTGGCAGATTGATTTGACATGGTATTTGATCAGATTTCTTCAAGTTGCTGGTTTGGCAACCGATGTGAAAACCCCAACTGAGAACCAGAAGAAACGAAAACCTTTGTACAACAAAACAAAAGAGCAAAAATTTGAAGAAAAAGTCTATTGCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FA_desaturase

Protein Analysis

130

Amino Acids

15.11

Weight (kDa)

8.28

Isoelectric Point (pI)

34.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 33
AcsI RAATTY 1 cut(s) 365
AcvI CACGTG 1 cut(s) 71
AfaI GTAC 1 cut(s) 344
AfiI CCNNNNNNNGG 2 cut(s) 32, 173
AgeI ACCGGT 1 cut(s) 128
AgsI TTSAA 2 cut(s) 278, 371
AoxI GGCC 1 cut(s) 226
ApoI RAATTY 1 cut(s) 365
ArsI GACNNNNNNTTYG 2 cut(s) 244, 276
AsiGI ACCGGT 1 cut(s) 128
AspS9I GGNCC 1 cut(s) 226
AsuC2I CCSGG 1 cut(s) 43
AsuHPI GGTGA 1 cut(s) 143
BbrPI CACGTG 1 cut(s) 71
BciVI GTATCC 1 cut(s) 118
BclI TGATCA 1 cut(s) 264
BcnI CCSGG 1 cut(s) 43
BfaI CTAG 1 cut(s) 141
BfuI GTATCC 1 cut(s) 118
Bme1390I CCNGG 1 cut(s) 43
BmgT120I GGNCC 1 cut(s) 226
BmrFI CCNGG 1 cut(s) 43
BpuMI CCSGG 1 cut(s) 43
BsaAI YACGTR 1 cut(s) 71
BsaWI WCCGGW 1 cut(s) 128
Bsc4I CCNNNNNNNGG 2 cut(s) 32, 173
Bse118I RCCGGY 1 cut(s) 128
Bse1I ACTGG 1 cut(s) 155
Bse3DI GCAATG 1 cut(s) 161
BseLI CCNNNNNNNGG 2 cut(s) 32, 173
BseMI GCAATG 1 cut(s) 161
BseMII CTCAG 1 cut(s) 306
BseNI ACTGG 1 cut(s) 155
BshFI GGCC 1 cut(s) 228
BshTI ACCGGT 1 cut(s) 128
BsiSI CCGG 2 cut(s) 42, 129
BslI CCNNNNNNNGG 2 cut(s) 32, 173
BsnI GGCC 1 cut(s) 228
Bsp1407I TGTACA 1 cut(s) 342
Bsp143I GATC 1 cut(s) 264
BspACI CCGC 1 cut(s) 33
BspANI GGCC 1 cut(s) 228
BspCNI CTCAG 1 cut(s) 307
BsrDI GCAATG 1 cut(s) 161
BsrFI RCCGGY 1 cut(s) 128
BsrGI TGTACA 1 cut(s) 342
BsrI ACTGG 1 cut(s) 155
BssAI RCCGGY 1 cut(s) 128
BssMI GATC 1 cut(s) 264
Bst4CI ACNGT 1 cut(s) 56
BstAUI TGTACA 1 cut(s) 342
BstBAI YACGTR 1 cut(s) 71
BstDEI CTNAG 1 cut(s) 315
BstEII GGTNACC 1 cut(s) 63
BstKTI GATC 1 cut(s) 267
BstMBI GATC 1 cut(s) 264
BstMWI GCNNNNNNNGC 1 cut(s) 290
BstPI GGTNACC 1 cut(s) 63
BstSCI CCNGG 1 cut(s) 41
BsuI GTATCC 1 cut(s) 118
BsuRI GGCC 1 cut(s) 228
Cfr10I RCCGGY 1 cut(s) 128
Cfr13I GGNCC 1 cut(s) 226
Csp6I GTAC 1 cut(s) 343
CspAI ACCGGT 1 cut(s) 128
CviAII CATG 2 cut(s) 27, 255
CviJI RGCY 1 cut(s) 228
CviKI_1 RGCY 1 cut(s) 228
CviQI GTAC 1 cut(s) 343
DdeI CTNAG 1 cut(s) 315
DpnI GATC 1 cut(s) 266
DpnII GATC 1 cut(s) 264
Eco72I CACGTG 1 cut(s) 71
Eco91I GGTNACC 1 cut(s) 63
EcoO109I RGGNCCY 1 cut(s) 226
EcoO65I GGTNACC 1 cut(s) 63
FaeI CATG 2 cut(s) 30, 258
FaiI YATR 5 cut(s) 28, 104, 106, 121, 256
FatI CATG 2 cut(s) 26, 254
FauNDI CATATG 1 cut(s) 104
FbaI TGATCA 1 cut(s) 264
FspBI CTAG 1 cut(s) 141
HaeIII GGCC 1 cut(s) 228
HapII CCGG 2 cut(s) 42, 129
Hin1II CATG 2 cut(s) 30, 258
HpaII CCGG 2 cut(s) 42, 129
HphI GGTGA 1 cut(s) 143
Hpy166II GTNNAC 1 cut(s) 86
Hpy188I TCNGA 1 cut(s) 269
Hpy188III TCNNGA 2 cut(s) 141, 390
Hpy8I GTNNAC 1 cut(s) 86
HpyAV CCTTC 1 cut(s) 173
HpyCH4III ACNGT 1 cut(s) 56
HpyCH4IV ACGT 1 cut(s) 70
HpyF10VI GCNNNNNNNGC 1 cut(s) 290
HpyF3I CTNAG 1 cut(s) 315
HpySE526I ACGT 1 cut(s) 70
Hsp92II CATG 2 cut(s) 30, 258
Ksp22I TGATCA 1 cut(s) 264
Kzo9I GATC 1 cut(s) 264
LpnPI CCDG 6 cut(s) 55, 136, 142, 209, 270, 335
MaeI CTAG 1 cut(s) 141
MaeII ACGT 1 cut(s) 70
MaeIII GTNAC 3 cut(s) 63, 71, 96
MalI GATC 1 cut(s) 266
MboI GATC 1 cut(s) 264
MboII GAAGA 3 cut(s) 266, 337, 383
MluCI AATT 1 cut(s) 365
MnlI CCTC 2 cut(s) 43, 239
MslI CAYNNNNRTG 1 cut(s) 103
MspI CCGG 2 cut(s) 42, 129
MspR9I CCNGG 1 cut(s) 43
MwoI GCNNNNNNNGC 1 cut(s) 290
NciI CCSGG 1 cut(s) 43
NdeI CATATG 1 cut(s) 104
NdeII GATC 1 cut(s) 264
NlaIII CATG 2 cut(s) 30, 258
NmuCI GTSAC 2 cut(s) 71, 96
PinAI ACCGGT 1 cut(s) 128
PmaCI CACGTG 1 cut(s) 71
PmlI CACGTG 1 cut(s) 71
Ppu21I YACGTR 1 cut(s) 71
PspCI CACGTG 1 cut(s) 71
PspEI GGTNACC 1 cut(s) 63
PspPI GGNCC 1 cut(s) 226
RsaI GTAC 1 cut(s) 344
RsaNI GTAC 1 cut(s) 343
RseI CAYNNNNRTG 1 cut(s) 103
Sau3AI GATC 1 cut(s) 264
Sau96I GGNCC 1 cut(s) 226
ScrFI CCNGG 1 cut(s) 43
SetI ASST 2 cut(s) 73, 340
SmiMI CAYNNNNRTG 1 cut(s) 103
SmlI CTYRAG 1 cut(s) 16
SmoI CTYRAG 1 cut(s) 16
Sse9I AATT 1 cut(s) 365
SsiI CCGC 1 cut(s) 33
SspMI CTAG 1 cut(s) 141
StyD4I CCNGG 1 cut(s) 41
TaaI ACNGT 1 cut(s) 56
TaiI ACGT 1 cut(s) 73
TaqI TCGA 2 cut(s) 220, 231
TasI AATT 1 cut(s) 365
TatI WGTACW 1 cut(s) 342
TseFI GTSAC 2 cut(s) 71, 96
Tsp45I GTSAC 2 cut(s) 71, 96
XapI RAATTY 1 cut(s) 365
XbaI TCTAGA 1 cut(s) 140
XspI CTAG 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.