Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0007539

Physical Location & Seq

Genomic Coordinates Reverse (-)

452786 .. 453379

Gene Structure 594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG005900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGAAGGGATGAGAGTCTGCGAGCATTGCAGTGCTACTTTCTACCTTCTCTGTTTTTCTTTGATGAATTTAATTTTGGATCGTTTGGCTTTCTTTGCAGGGTGTGAGGACAGTAGTTGGTTACCACGTGACTTTTTCTGTAAACTCGGTTTGTCACACATATGGGGAAAGCGAGTATGGGATACCGGTGATTTGTCTAGAAACAACTGGTTGTTGGCATTGCCTACACTTGGAGAAGGGTGGCACAATAACCACCACGCCTTTGATTACTCAGCTCGACAGGGCCTCGAATGGTGGCAGATTGATTTGACATGGTATTTGATCAGATTTCTTCAAGTTGCTGGTTTGGCAACCGATGTGAAAACCCCAACTGAGACCCAGAAGAAACCAAAACCTTTGTACAACAAAACAAAAGAGCAAAAATTTGAAGAAATCTATAAACTTTTTTTTGCGTCTGACGATGTTATGGCTTCTGCGATTCAAATTCAAAGTTCTTTCATCAAATTTACATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FA_desaturase

Protein Analysis

171

Amino Acids

20.05

Weight (kDa)

6.51

Isoelectric Point (pI)

34.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007539)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g16180
rosa_chinensis	RchiOBHm_Chr2g0158081 RchiOBHm_Chr2g0159461 RchiOBHm_Chr4g0425021
rosa_laevigata	RLG00000015820
rosa_multiflora	Rmu_co8373497.1_g000001 Rmu_sc0005982.1_g000015 Rmu_sc0033090.1_g000001 Rmu_ssc0000187.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056800 Rroxscaffold_2G00091620 Rroxscaffold_4G00310500 Rroxscaffold_4G00310510
rosa_rugosa	Rorug07G0052900
rosa_samantha	Rh1AG184500 Rh2BG024500 Rh2BG555100 Rh2DG024600 Rh5AG004400 Rh5BG005900 Rh5CG004800 Rh5DG004800 Rh7BG180000 Rh7BG295000
rosa_wichuraiana	Rw2G043980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	87
AcsI	RAATTY	4 cut(s)	67, 422, 483, 503
AcvI	CACGTG	1 cut(s)	128
AfaI	GTAC	1 cut(s)	401
AfiI	CCNNNNNNNGG	1 cut(s)	230
AgeI	ACCGGT	1 cut(s)	185
AgsI	TTSAA	4 cut(s)	335, 428, 482, 488
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AluBI	AGCT	1 cut(s)	275
AluI	AGCT	1 cut(s)	275
Alw26I	GTCTC	1 cut(s)	368
AlwI	GGATC	1 cut(s)	87
AoxI	GGCC	1 cut(s)	283
ApoI	RAATTY	4 cut(s)	67, 422, 483, 503
ArsI	GACNNNNNNTTYG	2 cut(s)	301, 333
AsiGI	ACCGGT	1 cut(s)	185
AspS9I	GGNCC	1 cut(s)	283
AsuHPI	GGTGA	1 cut(s)	200
BbrPI	CACGTG	1 cut(s)	128
BciVI	GTATCC	1 cut(s)	175
BclI	TGATCA	1 cut(s)	321
BcoDI	GTCTC	1 cut(s)	368
BfaI	CTAG	1 cut(s)	198
BfuI	GTATCC	1 cut(s)	175
BmgT120I	GGNCC	1 cut(s)	283
BsaAI	YACGTR	1 cut(s)	128
BsaI	GGTCTC	1 cut(s)	368
BsaWI	WCCGGW	1 cut(s)	185
Bsc4I	CCNNNNNNNGG	1 cut(s)	230
Bse118I	RCCGGY	1 cut(s)	185
Bse1I	ACTGG	1 cut(s)	212
Bse3DI	GCAATG	2 cut(s)	25, 218
BseGI	GGATG	1 cut(s)	15
BseLI	CCNNNNNNNGG	1 cut(s)	230
BseMI	GCAATG	2 cut(s)	25, 218
BseMII	CTCAG	2 cut(s)	285, 363
BseNI	ACTGG	1 cut(s)	212
BshFI	GGCC	1 cut(s)	285
BshTI	ACCGGT	1 cut(s)	185
BsiSI	CCGG	1 cut(s)	186
BslI	CCNNNNNNNGG	1 cut(s)	230
BsmAI	GTCTC	1 cut(s)	368
BsnI	GGCC	1 cut(s)	285
Bso31I	GGTCTC	1 cut(s)	368
Bsp1407I	TGTACA	1 cut(s)	399
Bsp143I	GATC	2 cut(s)	79, 321
BspANI	GGCC	1 cut(s)	285
BspCNI	CTCAG	2 cut(s)	284, 364
BspPI	GGATC	1 cut(s)	87
BspTNI	GGTCTC	1 cut(s)	368
BsrDI	GCAATG	2 cut(s)	25, 218
BsrFI	RCCGGY	1 cut(s)	185
BsrGI	TGTACA	1 cut(s)	399
BsrI	ACTGG	1 cut(s)	212
BssAI	RCCGGY	1 cut(s)	185
BssMI	GATC	2 cut(s)	79, 321
Bst4CI	ACNGT	1 cut(s)	113
BstAUI	TGTACA	1 cut(s)	399
BstBAI	YACGTR	1 cut(s)	128
BstC8I	GCNNGC	1 cut(s)	23
BstDEI	CTNAG	2 cut(s)	271, 372
BstEII	GGTNACC	1 cut(s)	120
BstF5I	GGATG	1 cut(s)	15
BstKTI	GATC	2 cut(s)	82, 324
BstMAI	GTCTC	1 cut(s)	368
BstMBI	GATC	2 cut(s)	79, 321
BstMWI	GCNNNNNNNGC	3 cut(s)	27, 95, 347
BstPI	GGTNACC	1 cut(s)	120
BsuI	GTATCC	1 cut(s)	175
BsuRI	GGCC	1 cut(s)	285
BtsCI	GGATG	1 cut(s)	15
BtsI	GCAGTG	1 cut(s)	37
BtsIMutI	CAGTG	1 cut(s)	37
Cac8I	GCNNGC	1 cut(s)	23
Cfr10I	RCCGGY	1 cut(s)	185
Cfr13I	GGNCC	1 cut(s)	283
CseI	GACGC	1 cut(s)	441
Csp6I	GTAC	1 cut(s)	400
CspAI	ACCGGT	1 cut(s)	185
CviAII	CATG	1 cut(s)	312
CviJI	RGCY	4 cut(s)	89, 275, 285, 470
CviKI_1	RGCY	4 cut(s)	89, 275, 285, 470
CviQI	GTAC	1 cut(s)	400
DdeI	CTNAG	2 cut(s)	271, 372
DpnI	GATC	2 cut(s)	81, 323
DpnII	GATC	2 cut(s)	79, 321
Eco31I	GGTCTC	1 cut(s)	368
Eco72I	CACGTG	1 cut(s)	128
Eco91I	GGTNACC	1 cut(s)	120
EcoO109I	RGGNCCY	1 cut(s)	283
EcoO65I	GGTNACC	1 cut(s)	120
FaeI	CATG	1 cut(s)	315
FaiI	YATR	7 cut(s)	161, 163, 178, 313, 438, 467, 511
FatI	CATG	1 cut(s)	311
FauNDI	CATATG	1 cut(s)	161
FbaI	TGATCA	1 cut(s)	321
FokI	GGATG	1 cut(s)	22
FspBI	CTAG	1 cut(s)	198
HaeIII	GGCC	1 cut(s)	285
HapII	CCGG	1 cut(s)	186
HgaI	GACGC	1 cut(s)	441
Hin1II	CATG	1 cut(s)	315
HinfI	GANTC	2 cut(s)	15, 478
HpaII	CCGG	1 cut(s)	186
HphI	GGTGA	1 cut(s)	200
Hpy166II	GTNNAC	1 cut(s)	143
Hpy188I	TCNGA	2 cut(s)	326, 457
Hpy188III	TCNNGA	1 cut(s)	198
Hpy8I	GTNNAC	1 cut(s)	143
HpyAV	CCTTC	2 cut(s)	56, 230
HpyCH4III	ACNGT	1 cut(s)	113
HpyCH4IV	ACGT	1 cut(s)	127
HpyCH4V	TGCA	2 cut(s)	30, 98
HpyF10VI	GCNNNNNNNGC	3 cut(s)	27, 95, 347
HpyF3I	CTNAG	2 cut(s)	271, 372
HpySE526I	ACGT	1 cut(s)	127
Hsp92II	CATG	1 cut(s)	315
Ksp22I	TGATCA	1 cut(s)	321
Kzo9I	GATC	2 cut(s)	79, 321
LpnPI	CCDG	6 cut(s)	84, 193, 199, 266, 327, 392
MaeI	CTAG	1 cut(s)	198
MaeII	ACGT	1 cut(s)	127
MaeIII	GTNAC	3 cut(s)	120, 128, 153
MalI	GATC	2 cut(s)	81, 323
MboI	GATC	2 cut(s)	79, 321
MboII	GAAGA	3 cut(s)	323, 394, 440
MluCI	AATT	5 cut(s)	67, 72, 422, 483, 503
MlyI	GAGTC	1 cut(s)	24
MnlI	CCTC	2 cut(s)	100, 296
MseI	TTAA	1 cut(s)	71
MslI	CAYNNNNRTG	2 cut(s)	30, 160
MspI	CCGG	1 cut(s)	186
MwoI	GCNNNNNNNGC	3 cut(s)	27, 95, 347
NdeI	CATATG	1 cut(s)	161
NdeII	GATC	2 cut(s)	79, 321
NlaIII	CATG	1 cut(s)	315
NmuCI	GTSAC	2 cut(s)	128, 153
PfeI	GAWTC	1 cut(s)	478
PinAI	ACCGGT	1 cut(s)	185
PleI	GAGTC	1 cut(s)	23
PmaCI	CACGTG	1 cut(s)	128
PmlI	CACGTG	1 cut(s)	128
PpsI	GAGTC	1 cut(s)	23
Ppu21I	YACGTR	1 cut(s)	128
PspCI	CACGTG	1 cut(s)	128
PspEI	GGTNACC	1 cut(s)	120
PspPI	GGNCC	1 cut(s)	283
RsaI	GTAC	1 cut(s)	401
RsaNI	GTAC	1 cut(s)	400
RseI	CAYNNNNRTG	2 cut(s)	30, 160
SaqAI	TTAA	1 cut(s)	71
Sau3AI	GATC	2 cut(s)	79, 321
Sau96I	GGNCC	1 cut(s)	283
SchI	GAGTC	1 cut(s)	24
SetI	ASST	4 cut(s)	48, 130, 277, 397
SmiMI	CAYNNNNRTG	2 cut(s)	30, 160
Sse9I	AATT	5 cut(s)	67, 72, 422, 483, 503
SspMI	CTAG	1 cut(s)	198
TaaI	ACNGT	1 cut(s)	113
TaiI	ACGT	1 cut(s)	130
TaqI	TCGA	2 cut(s)	277, 288
TasI	AATT	5 cut(s)	67, 72, 422, 483, 503
TatI	WGTACW	1 cut(s)	399
TfiI	GAWTC	1 cut(s)	478
Tru1I	TTAA	1 cut(s)	71
Tru9I	TTAA	1 cut(s)	71
TscAI	CASTG	1 cut(s)	37
TseFI	GTSAC	2 cut(s)	128, 153
Tsp45I	GTSAC	2 cut(s)	128, 153
TspDTI	ATGAA	2 cut(s)	80, 487
TspRI	CASTG	1 cut(s)	37
XapI	RAATTY	4 cut(s)	67, 422, 483, 503
XbaI	TCTAGA	1 cut(s)	197
XspI	CTAG	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.