Rh7BG180000

Palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0007539
Physical Location & Seq
Reverse (-)
14274242 .. 14274815
574 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG180000.1

Sequence Viewer

Length: 339 bp
ATGGGCGTGAGGATGGTAGTTGTTTACCACATTTCCATGTCAGTAAACTCGATTTGCCACAGATGGGGGAAGCAAGTATGGGATACTGGTGATTTGTCTAAAAACAACTGGTTGTTTGGATTGCTGGCTCATGGAGAAGGTTGGCACAATAACCACCATGCTTTTGAGTACTCTGCAAGACAAGGTCTGGCATGGTGGCAATTTGATCTCACGTGGTATATAATAAGGTTCCTTGAAATTGTTGGCTTGGCTACCGATGTGAAACTCCCGACGGAAGACCAGAAAAAACGAAGAGCTTTGCACAACAAAATTAAGGAGGAAAGGCTTGACCAACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FA_desaturase

Protein Analysis

112

Amino Acids

13.3

Weight (kDa)

8.82

Isoelectric Point (pI)

47.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FA_desaturase PF00487 8 - 76 3.9e-06 Fatty acid desaturase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcvI CACGTG 1 cut(s) 213
AfaI GTAC 1 cut(s) 170
AfiI CCNNNNNNNGG 1 cut(s) 64
AgsI TTSAA 1 cut(s) 236
AluBI AGCT 1 cut(s) 296
AluI AGCT 1 cut(s) 296
AsuHPI GGTGA 1 cut(s) 101
BbrPI CACGTG 1 cut(s) 213
BbsI GAAGAC 1 cut(s) 282
BccI CCATC 2 cut(s) 7, 57
BciVI GTATCC 1 cut(s) 76
BfuI GTATCC 1 cut(s) 76
BmcAI AGTACT 1 cut(s) 170
BmiI GGNNCC 1 cut(s) 230
BpiI GAAGAC 1 cut(s) 282
BsaAI YACGTR 1 cut(s) 213
Bsc4I CCNNNNNNNGG 1 cut(s) 64
Bse1I ACTGG 2 cut(s) 91, 113
BseGI GGATG 1 cut(s) 18
BseLI CCNNNNNNNGG 1 cut(s) 64
BseNI ACTGG 2 cut(s) 91, 113
BslI CCNNNNNNNGG 1 cut(s) 64
Bsp143I GATC 1 cut(s) 205
BspLI GGNNCC 1 cut(s) 230
BspQI GCTCTTC 1 cut(s) 286
BsrI ACTGG 2 cut(s) 91, 113
BssMI GATC 1 cut(s) 205
Bst4CI ACNGT 1 cut(s) 336
Bst6I CTCTTC 1 cut(s) 286
BstBAI YACGTR 1 cut(s) 213
BstC8I GCNNGC 1 cut(s) 126
BstF5I GGATG 1 cut(s) 18
BstKTI GATC 1 cut(s) 208
BstMBI GATC 1 cut(s) 205
BstV2I GAAGAC 1 cut(s) 282
BsuI GTATCC 1 cut(s) 76
BtsCI GGATG 1 cut(s) 18
Cac8I GCNNGC 1 cut(s) 126
Csp6I GTAC 1 cut(s) 169
CviAII CATG 4 cut(s) 37, 131, 158, 192
CviJI RGCY 5 cut(s) 128, 246, 251, 296, 325
CviKI_1 RGCY 5 cut(s) 128, 246, 251, 296, 325
CviQI GTAC 1 cut(s) 169
DpnI GATC 1 cut(s) 207
DpnII GATC 1 cut(s) 205
Eam1104I CTCTTC 1 cut(s) 286
EarI CTCTTC 1 cut(s) 286
Eco72I CACGTG 1 cut(s) 213
FaeI CATG 4 cut(s) 40, 134, 161, 195
FaiI YATR 7 cut(s) 38, 79, 132, 159, 193, 219, 221
FatI CATG 4 cut(s) 36, 130, 157, 191
FokI GGATG 1 cut(s) 25
Hin1II CATG 4 cut(s) 40, 134, 161, 195
HphI GGTGA 1 cut(s) 101
Hpy166II GTNNAC 2 cut(s) 25, 46
Hpy188III TCNNGA 1 cut(s) 268
Hpy8I GTNNAC 2 cut(s) 25, 46
Hpy99I CGWCG 1 cut(s) 274
HpyAV CCTTC 1 cut(s) 131
HpyCH4III ACNGT 1 cut(s) 336
HpyCH4IV ACGT 1 cut(s) 212
HpyCH4V TGCA 2 cut(s) 176, 301
HpySE526I ACGT 1 cut(s) 212
Hsp92II CATG 4 cut(s) 40, 134, 161, 195
Kzo9I GATC 1 cut(s) 205
LguI GCTCTTC 1 cut(s) 286
LpnPI CCDG 5 cut(s) 72, 94, 110, 173, 293
MaeII ACGT 1 cut(s) 212
MalI GATC 1 cut(s) 207
MboI GATC 1 cut(s) 205
MboII GAAGA 2 cut(s) 287, 303
MluCI AATT 3 cut(s) 200, 237, 309
MnlI CCTC 2 cut(s) 3, 310
MseI TTAA 1 cut(s) 312
MslI CAYNNNNRTG 1 cut(s) 35
NdeII GATC 1 cut(s) 205
NlaIII CATG 4 cut(s) 40, 134, 161, 195
NlaIV GGNNCC 1 cut(s) 230
PciSI GCTCTTC 1 cut(s) 286
PflFI GACNNNGTC 1 cut(s) 183
PmaCI CACGTG 1 cut(s) 213
PmlI CACGTG 1 cut(s) 213
Ppu21I YACGTR 1 cut(s) 213
PspCI CACGTG 1 cut(s) 213
PspN4I GGNNCC 1 cut(s) 230
PsyI GACNNNGTC 1 cut(s) 183
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
RseI CAYNNNNRTG 1 cut(s) 35
SapI GCTCTTC 1 cut(s) 286
SaqAI TTAA 1 cut(s) 312
Sau3AI GATC 1 cut(s) 205
ScaI AGTACT 1 cut(s) 170
SetI ASST 5 cut(s) 142, 187, 215, 230, 298
SmiMI CAYNNNNRTG 1 cut(s) 35
Sse9I AATT 3 cut(s) 200, 237, 309
TaaI ACNGT 1 cut(s) 336
TaiI ACGT 1 cut(s) 215
TaqI TCGA 1 cut(s) 50
TasI AATT 3 cut(s) 200, 237, 309
TatI WGTACW 1 cut(s) 168
Tru1I TTAA 1 cut(s) 312
Tru9I TTAA 1 cut(s) 312
TspGWI ACGGA 1 cut(s) 287
Tth111I GACNNNGTC 1 cut(s) 183
ZrmI AGTACT 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.