Rh2BG024500

Palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0007539
Physical Location & Seq
Reverse (-)
1656990 .. 1657918
929 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG024500.1

Sequence Viewer

Length: 525 bp
ATGGGATGGATTCTCGATAGCAATAAGCGCTTCGGAAAATATGGAGGACTGAAGAATGTTGAAGATTTGAAAATGCAGCCATTCTATAGGTTTCTTCATCATACGTTTCTTCTACACTCGTTTATTCTTGGAGGAATTCTATATGCCCTAGGTGGGTTTCCCTTCATTGTTTGGGGAATGGGAGTGAGGATGCTAGTTGTTTTCCACGGCACCATGCTAGTAAATTCGGCCTGCCACACATGGGGGTATCAAGCATGGAATACCGGTGATCTATCTAAGAACCTTTGGTGGTTGGGAGTGCTTGGATTAGGAGAAGGATGGCACAACAATCACCACGCTTTCGAATACTCGGCTCGACAAGGCCTCGAATGGTGGCAGATTGACGTGACTTGGTACGTCAAAAAATTTCTTGAAGCTCTAGGATTGGCAAAAGATGTGAAACTACCATCCGAAGCTCATAAGAAACGCAAAGCTTTAGAGACCAGAACAACGATGGTTACTCATGAAATAAGCCACGAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FA_desaturase

Protein Analysis

174

Amino Acids

20.16

Weight (kDa)

8.97

Isoelectric Point (pI)

38.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FA_desaturase PF00487 38 - 138 2.2e-07 Fatty acid desaturase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 209
AcsI RAATTY 3 cut(s) 135, 223, 404
AcuI CTGAAG 1 cut(s) 71
AfaI GTAC 1 cut(s) 395
AfeI AGCGCT 1 cut(s) 29
AfiI CCNNNNNNNGG 2 cut(s) 153, 241
AgeI ACCGGT 1 cut(s) 263
AgsI TTSAA 3 cut(s) 62, 70, 413
AjiI CACGTC 1 cut(s) 385
AluBI AGCT 3 cut(s) 416, 455, 473
AluI AGCT 3 cut(s) 416, 455, 473
Alw26I GTCTC 1 cut(s) 473
Aor51HI AGCGCT 1 cut(s) 29
AoxI GGCC 2 cut(s) 228, 361
ApeKI GCWGC 1 cut(s) 76
ApoI RAATTY 3 cut(s) 135, 223, 404
AsiGI ACCGGT 1 cut(s) 263
AspA2I CCTAGG 1 cut(s) 148
AspLEI GCGC 1 cut(s) 30
AsuHPI GGTGA 2 cut(s) 278, 323
AsuII TTCGAA 1 cut(s) 342
AvrII CCTAGG 1 cut(s) 148
BanI GGYRCC 1 cut(s) 209
BbvI GCAGC 1 cut(s) 88
BccI CCATC 3 cut(s) 312, 454, 487
BceAI ACGGC 1 cut(s) 223
BcoDI GTCTC 1 cut(s) 473
BfaI CTAG 4 cut(s) 149, 194, 218, 419
BfmI CTRYAG 1 cut(s) 85
BfoI RGCGCY 1 cut(s) 31
BisI GCNGC 1 cut(s) 77
BlnI CCTAGG 1 cut(s) 148
BlsI GCNGC 1 cut(s) 78
BmgBI CACGTC 1 cut(s) 385
BmiI GGNNCC 1 cut(s) 211
BmsI GCATC 1 cut(s) 180
Bpu14I TTCGAA 1 cut(s) 342
BsaI GGTCTC 1 cut(s) 473
BsaJI CCNNGG 2 cut(s) 148, 205
BsaWI WCCGGW 1 cut(s) 263
Bsc4I CCNNNNNNNGG 2 cut(s) 153, 241
Bse118I RCCGGY 1 cut(s) 263
BseDI CCNNGG 2 cut(s) 148, 205
BseGI GGATG 4 cut(s) 11, 195, 323, 446
BseLI CCNNNNNNNGG 2 cut(s) 153, 241
BseXI GCAGC 1 cut(s) 88
BshFI GGCC 2 cut(s) 230, 363
BshNI GGYRCC 1 cut(s) 209
BshTI ACCGGT 1 cut(s) 263
BsiSI CCGG 1 cut(s) 264
BslI CCNNNNNNNGG 2 cut(s) 153, 241
BsmAI GTCTC 1 cut(s) 473
BsnI GGCC 2 cut(s) 230, 363
Bso31I GGTCTC 1 cut(s) 473
Bsp119I TTCGAA 1 cut(s) 342
Bsp143I GATC 1 cut(s) 268
BspANI GGCC 2 cut(s) 230, 363
BspHI TCATGA 1 cut(s) 502
BspLI GGNNCC 1 cut(s) 211
BspT104I TTCGAA 1 cut(s) 342
BspT107I GGYRCC 1 cut(s) 209
BspTNI GGTCTC 1 cut(s) 473
BsrFI RCCGGY 1 cut(s) 263
BssAI RCCGGY 1 cut(s) 263
BssECI CCNNGG 2 cut(s) 148, 205
BssMI GATC 1 cut(s) 268
BssT1I CCWWGG 1 cut(s) 148
BstBI TTCGAA 1 cut(s) 342
BstC8I GCNNGC 1 cut(s) 232
BstDEI CTNAG 1 cut(s) 276
BstDSI CCRYGG 1 cut(s) 205
BstF5I GGATG 4 cut(s) 11, 195, 323, 446
BstH2I RGCGCY 1 cut(s) 31
BstHHI GCGC 1 cut(s) 30
BstKTI GATC 1 cut(s) 271
BstMAI GTCTC 1 cut(s) 473
BstMBI GATC 1 cut(s) 268
BstMWI GCNNNNNNNGC 1 cut(s) 27
BstSFI CTRYAG 1 cut(s) 85
BstV1I GCAGC 1 cut(s) 88
BsuRI GGCC 2 cut(s) 230, 363
BtgI CCRYGG 1 cut(s) 205
BtrI CACGTC 1 cut(s) 385
BtsCI GGATG 4 cut(s) 11, 195, 323, 446
Cac8I GCNNGC 1 cut(s) 232
CciI TCATGA 1 cut(s) 502
CfoI GCGC 1 cut(s) 30
Cfr10I RCCGGY 1 cut(s) 263
Csp6I GTAC 1 cut(s) 394
CspAI ACCGGT 1 cut(s) 263
CviAII CATG 4 cut(s) 214, 240, 255, 503
CviJI RGCY 8 cut(s) 79, 230, 353, 363, 416, 455, 473, 513
CviKI_1 RGCY 8 cut(s) 79, 230, 353, 363, 416, 455, 473, 513
CviQI GTAC 1 cut(s) 394
DdeI CTNAG 1 cut(s) 276
DpnI GATC 1 cut(s) 270
DpnII GATC 1 cut(s) 268
Eco130I CCWWGG 1 cut(s) 148
Eco147I AGGCCT 1 cut(s) 363
Eco31I GGTCTC 1 cut(s) 473
Eco47III AGCGCT 1 cut(s) 29
Eco57I CTGAAG 1 cut(s) 71
EcoRI GAATTC 1 cut(s) 135
EcoT14I CCWWGG 1 cut(s) 148
ErhI CCWWGG 1 cut(s) 148
FaeI CATG 4 cut(s) 217, 243, 258, 506
FatI CATG 4 cut(s) 213, 239, 254, 502
Fnu4HI GCNGC 1 cut(s) 77
FokI GGATG 4 cut(s) 18, 202, 330, 433
Fsp4HI GCNGC 1 cut(s) 77
FspBI CTAG 4 cut(s) 149, 194, 218, 419
GlaI GCGC 1 cut(s) 29
GluI GCNGC 1 cut(s) 77
HaeII RGCGCY 1 cut(s) 31
HaeIII GGCC 2 cut(s) 230, 363
HapII CCGG 1 cut(s) 264
HhaI GCGC 1 cut(s) 30
Hin1II CATG 4 cut(s) 217, 243, 258, 506
Hin6I GCGC 1 cut(s) 28
HinP1I GCGC 1 cut(s) 28
HindIII AAGCTT 1 cut(s) 471
HinfI GANTC 1 cut(s) 10
HpaII CCGG 1 cut(s) 264
HphI GGTGA 2 cut(s) 278, 323
Hpy188I TCNGA 2 cut(s) 35, 451
Hpy188III TCNNGA 3 cut(s) 14, 410, 503
HpyAV CCTTC 2 cut(s) 172, 308
HpyCH4IV ACGT 3 cut(s) 104, 384, 396
HpyCH4V TGCA 1 cut(s) 76
HpyF10VI GCNNNNNNNGC 1 cut(s) 27
HpyF3I CTNAG 1 cut(s) 276
HpySE526I ACGT 3 cut(s) 104, 384, 396
Hsp92II CATG 4 cut(s) 217, 243, 258, 506
HspAI GCGC 1 cut(s) 28
Kzo9I GATC 1 cut(s) 268
LpnPI CCDG 3 cut(s) 244, 277, 496
Lsp1109I GCAGC 1 cut(s) 88
LweI GCATC 1 cut(s) 180
MaeI CTAG 4 cut(s) 149, 194, 218, 419
MaeII ACGT 3 cut(s) 104, 384, 396
MaeIII GTNAC 2 cut(s) 385, 496
MalI GATC 1 cut(s) 270
MboI GATC 1 cut(s) 268
MboII GAAGA 4 cut(s) 64, 74, 86, 101
MluCI AATT 3 cut(s) 135, 223, 404
MnlI CCTC 4 cut(s) 38, 125, 180, 374
MseI TTAA 1 cut(s) 523
MspI CCGG 1 cut(s) 264
MwoI GCNNNNNNNGC 1 cut(s) 27
NdeII GATC 1 cut(s) 268
NlaIII CATG 4 cut(s) 217, 243, 258, 506
NlaIV GGNNCC 1 cut(s) 211
NmeAIII GCCGAG 1 cut(s) 329
NmuCI GTSAC 1 cut(s) 385
NspV TTCGAA 1 cut(s) 342
PagI TCATGA 1 cut(s) 502
PceI AGGCCT 1 cut(s) 363
PfeI GAWTC 1 cut(s) 10
PinAI ACCGGT 1 cut(s) 263
PkrI GCNGC 1 cut(s) 78
PspN4I GGNNCC 1 cut(s) 211
RsaI GTAC 1 cut(s) 395
RsaNI GTAC 1 cut(s) 394
SaqAI TTAA 1 cut(s) 523
SatI GCNGC 1 cut(s) 77
Sau3AI GATC 1 cut(s) 268
SetI ASST 9 cut(s) 92, 107, 154, 285, 387, 399, 418, 457, 475
SfaNI GCATC 1 cut(s) 180
SfcI CTRYAG 1 cut(s) 85
SfuI TTCGAA 1 cut(s) 342
Sse9I AATT 3 cut(s) 135, 223, 404
SseBI AGGCCT 1 cut(s) 363
SspMI CTAG 4 cut(s) 149, 194, 218, 419
StuI AGGCCT 1 cut(s) 363
StyI CCWWGG 1 cut(s) 148
TaiI ACGT 3 cut(s) 107, 387, 399
TaqI TCGA 4 cut(s) 15, 342, 355, 366
TasI AATT 3 cut(s) 135, 223, 404
TfiI GAWTC 1 cut(s) 10
Tru1I TTAA 1 cut(s) 523
Tru9I TTAA 1 cut(s) 523
TseFI GTSAC 1 cut(s) 385
TseI GCWGC 1 cut(s) 76
Tsp45I GTSAC 1 cut(s) 385
TspDTI ATGAA 3 cut(s) 86, 154, 519
XapI RAATTY 3 cut(s) 135, 223, 404
XcmI CCANNNNNNNNNTGG 1 cut(s) 490
XmaJI CCTAGG 1 cut(s) 148
XspI CTAG 4 cut(s) 149, 194, 218, 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.