Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000187.1

Orthogroup ID

OG0007539

Physical Location & Seq

Genomic Coordinates Reverse (-)

59 .. 5438

Gene Structure 5380 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000187.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

atgggagggttccctttcattgtctggggaatgggtgtgaagattatttgggtgtaccacattacttggctggtaaattcagcttgccatgtttggggagagaaagcatggaaaactggtgatttgtctaggaacaattggtgggtggcattactagcatttggagagggatggcataataatcaccacgcttttgagtactcagctagacatggtctggattggtggcagcttgacatgacttggtatgttgtgagattgctccaagctattggattggccaccgatgtgaaggtaccaacagagagcaagtgcactagtttcaccttgactggtcatagtcaagaaaaagctgatgtggtgaccggccatgggagaaacacatttgtagcggaggattcttgcccgggcaaacatcaccccttcatgactacagccaaagaaatagtcaattccatgactatttccatgaccgatcaagcccgcatgccacacaagcccagccttcacgtggctgatgtgagcacgctatcagcaaccatcgacgcgccttggcttggaagtggaggacaccatgacgacgcgtggcgccgcaacgtgatggaagctgagtccaatcgcttgtcgcatagcgacagagagagatggctggcatgccacgtggaatccaaccgttggtcctatttgaaatctgatcccaacggtcatgaaatctcagccctttatttcaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006636 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009892 GO:0009987 GO:0010109 GO:0010205 GO:0012505 GO:0016020 GO:0016053 GO:0019222 GO:0019752 GO:0031323 GO:0031324 GO:0031984 GO:0032787 GO:0033559 GO:0042175 GO:0042548 GO:0043155 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043467 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0072330 GO:0098827 GO:1901576 GO:1905156

KEGG Pathways

Metabolic & Signaling

ko01040 ko01212 ko03320 ko04152 ko04212 map01040 map01212 map03320 map04152 map04212

Pfam Domains

Protein Families

FA_desaturase

Protein Analysis

244

Amino Acids

27.76

Weight (kDa)

6.48

Isoelectric Point (pI)

42.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007539)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g16180
rosa_chinensis	RchiOBHm_Chr2g0158081 RchiOBHm_Chr2g0159461 RchiOBHm_Chr4g0425021
rosa_laevigata	RLG00000015820
rosa_multiflora	Rmu_co8373497.1_g000001 Rmu_sc0005982.1_g000015 Rmu_sc0033090.1_g000001 Rmu_ssc0000187.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056800 Rroxscaffold_2G00091620 Rroxscaffold_4G00310500 Rroxscaffold_4G00310510
rosa_rugosa	Rorug07G0052900
rosa_samantha	Rh1AG184500 Rh2BG024500 Rh2BG555100 Rh2DG024600 Rh5AG004400 Rh5BG005900 Rh5CG004800 Rh5DG004800 Rh7BG180000 Rh7BG295000
rosa_wichuraiana	Rw2G043980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	295
AccB1I	GGYRCC	2 cut(s)	295, 588
AccB7I	CCANNNNNTGG	1 cut(s)	675
AccII	CGCG	2 cut(s)	548, 584
AciI	CCGC	3 cut(s)	392, 484, 592
AclWI	GGATC	1 cut(s)	689
AcoI	YGGCCR	2 cut(s)	279, 367
AcsI	RAATTY	1 cut(s)	76
AcvI	CACGTG	2 cut(s)	511, 661
AcyI	GRCGYC	1 cut(s)	589
AfaI	GTAC	3 cut(s)	56, 200, 297
AfiI	CCNNNNNNNGG	5 cut(s)	94, 372, 511, 557, 675
AflIII	ACRYGT	1 cut(s)	582
AgsI	TTSAA	2 cut(s)	688, 730
AhlI	ACTAGT	1 cut(s)	317
AleI	CACNNNNGTG	1 cut(s)	287
AluBI	AGCT	6 cut(s)	83, 206, 232, 269, 353, 608
AluI	AGCT	6 cut(s)	83, 206, 232, 269, 353, 608
Alw21I	GWGCWC	2 cut(s)	317, 527
Alw44I	GTGCAC	1 cut(s)	313
AlwI	GGATC	1 cut(s)	689
Ama87I	CYCGRG	1 cut(s)	406
AoxI	GGCC	2 cut(s)	279, 367
ApaLI	GTGCAC	1 cut(s)	313
ApeKI	GCWGC	1 cut(s)	229
ApoI	RAATTY	1 cut(s)	76
ArsI	GACNNNNNNTTYG	2 cut(s)	432, 464
Asp718I	GGTACC	1 cut(s)	295
AspLEI	GCGC	2 cut(s)	550, 591
AspS9I	GGNCC	1 cut(s)	678
AsuC2I	CCSGG	2 cut(s)	407, 408
AsuHPI	GGTGA	5 cut(s)	131, 176, 316, 373, 410
AvaI	CYCGRG	1 cut(s)	406
AvaII	GGWCC	1 cut(s)	678
BaeGI	GKGCMC	1 cut(s)	317
BalI	TGGCCA	1 cut(s)	281
BanI	GGYRCC	2 cut(s)	295, 588
BbrPI	CACGTG	2 cut(s)	511, 661
Bbv12I	GWGCWC	2 cut(s)	317, 527
BbvI	GCAGC	1 cut(s)	241
BccI	CCATC	4 cut(s)	165, 548, 595, 639
BcnI	CCSGG	2 cut(s)	407, 408
BcuI	ACTAGT	1 cut(s)	317
BfaI	CTAG	4 cut(s)	129, 155, 207, 318
BfmI	CTRYAG	1 cut(s)	432
BfoI	RGCGCY	1 cut(s)	592
BisI	GCNGC	2 cut(s)	230, 592
BlsI	GCNGC	2 cut(s)	231, 593
BmcAI	AGTACT	1 cut(s)	200
Bme1390I	CCNGG	2 cut(s)	407, 408
Bme18I	GGWCC	1 cut(s)	678
BmeT110I	CYCGRG	1 cut(s)	406
BmgT120I	GGNCC	1 cut(s)	678
BmiI	GGNNCC	3 cut(s)	11, 297, 590
BmrFI	CCNGG	2 cut(s)	407, 408
BpuMI	CCSGG	2 cut(s)	407, 408
BsaAI	YACGTR	2 cut(s)	511, 661
BsaHI	GRCGYC	1 cut(s)	589
BsaJI	CCNNGG	3 cut(s)	370, 406, 551
Bsc4I	CCNNNNNNNGG	5 cut(s)	94, 372, 511, 557, 675
Bse118I	RCCGGY	1 cut(s)	365
Bse1I	ACTGG	2 cut(s)	121, 337
BseDI	CCNNGG	3 cut(s)	370, 406, 551
BseGI	GGATG	1 cut(s)	176
BseLI	CCNNNNNNNGG	5 cut(s)	94, 372, 511, 557, 675
BseMII	CTCAG	3 cut(s)	216, 600, 729
BseNI	ACTGG	2 cut(s)	121, 337
BseSI	GKGCMC	1 cut(s)	317
BseXI	GCAGC	1 cut(s)	241
BseYI	CCCAGC	1 cut(s)	500
Bsh1236I	CGCG	2 cut(s)	548, 584
BshFI	GGCC	2 cut(s)	281, 369
BshNI	GGYRCC	2 cut(s)	295, 588
BsiHKAI	GWGCWC	2 cut(s)	317, 527
BsiHKCI	CYCGRG	1 cut(s)	406
BsiSI	CCGG	2 cut(s)	366, 407
BslI	CCNNNNNNNGG	5 cut(s)	94, 372, 511, 557, 675
BsnI	GGCC	2 cut(s)	281, 369
BsoBI	CYCGRG	1 cut(s)	406
Bsp1286I	GDGCHC	2 cut(s)	317, 527
Bsp143I	GATC	2 cut(s)	475, 694
Bsp19I	CCATGG	1 cut(s)	370
BspACI	CCGC	3 cut(s)	392, 484, 592
BspANI	GGCC	2 cut(s)	281, 369
BspCNI	CTCAG	3 cut(s)	215, 601, 728
BspFNI	CGCG	2 cut(s)	548, 584
BspHI	TCATGA	2 cut(s)	426, 706
BspLI	GGNNCC	3 cut(s)	11, 297, 590
BspPI	GGATC	1 cut(s)	689
BspT107I	GGYRCC	2 cut(s)	295, 588
BsrFI	RCCGGY	1 cut(s)	365
BsrI	ACTGG	2 cut(s)	121, 337
BssAI	RCCGGY	1 cut(s)	365
BssECI	CCNNGG	3 cut(s)	370, 406, 551
BssMI	GATC	2 cut(s)	475, 694
BssNI	GRCGYC	1 cut(s)	589
BssT1I	CCWWGG	2 cut(s)	370, 551
Bst4CI	ACNGT	2 cut(s)	674, 704
BstACI	GRCGYC	1 cut(s)	589
BstBAI	YACGTR	2 cut(s)	511, 661
BstC8I	GCNNGC	6 cut(s)	85, 484, 488, 527, 651, 655
BstDEI	CTNAG	3 cut(s)	202, 609, 715
BstDSI	CCRYGG	1 cut(s)	370
BstEII	GGTNACC	1 cut(s)	361
BstF5I	GGATG	1 cut(s)	176
BstFNI	CGCG	2 cut(s)	548, 584
BstH2I	RGCGCY	1 cut(s)	592
BstHHI	GCGC	2 cut(s)	550, 591
BstKTI	GATC	2 cut(s)	478, 697
BstMBI	GATC	2 cut(s)	475, 694
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 496
BstNSI	RCATGY	2 cut(s)	490, 657
BstPI	GGTNACC	1 cut(s)	361
BstSCI	CCNGG	2 cut(s)	405, 406
BstSFI	CTRYAG	1 cut(s)	432
BstSLI	GKGCMC	1 cut(s)	317
BstUI	CGCG	2 cut(s)	548, 584
BstV1I	GCAGC	1 cut(s)	241
BstXI	CCANNNNNNTGG	1 cut(s)	272
BsuRI	GGCC	2 cut(s)	281, 369
BtgI	CCRYGG	1 cut(s)	370
BtsCI	GGATG	1 cut(s)	176
Cac8I	GCNNGC	6 cut(s)	85, 484, 488, 527, 651, 655
CciI	TCATGA	2 cut(s)	426, 706
CfoI	GCGC	2 cut(s)	550, 591
Cfr10I	RCCGGY	1 cut(s)	365
Cfr13I	GGNCC	1 cut(s)	678
Cfr9I	CCCGGG	1 cut(s)	406
CseI	GACGC	2 cut(s)	554, 590
Csp6I	GTAC	3 cut(s)	55, 199, 296
CspCI	CAANNNNNGTGG	2 cut(s)	47, 82
CviQI	GTAC	3 cut(s)	55, 199, 296
DdeI	CTNAG	3 cut(s)	202, 609, 715
DinI	GGCGCC	1 cut(s)	590
DpnI	GATC	2 cut(s)	477, 696
DpnII	GATC	2 cut(s)	475, 694
EaeI	YGGCCR	2 cut(s)	279, 367
Eco130I	CCWWGG	2 cut(s)	370, 551
Eco47I	GGWCC	1 cut(s)	678
Eco72I	CACGTG	2 cut(s)	511, 661
Eco88I	CYCGRG	1 cut(s)	406
Eco91I	GGTNACC	1 cut(s)	361
EcoO65I	GGTNACC	1 cut(s)	361
EcoT14I	CCWWGG	2 cut(s)	370, 551
EgeI	GGCGCC	1 cut(s)	590
EheI	GGCGCC	1 cut(s)	590
ErhI	CCWWGG	2 cut(s)	370, 551
FauI	CCCGC	1 cut(s)	491
Fnu4HI	GCNGC	2 cut(s)	230, 592
FokI	GGATG	1 cut(s)	183
Fsp4HI	GCNGC	2 cut(s)	230, 592
FspBI	CTAG	4 cut(s)	129, 155, 207, 318
GlaI	GCGC	2 cut(s)	549, 590
GluI	GCNGC	2 cut(s)	230, 592
GsaI	CCCAGC	1 cut(s)	504
HaeII	RGCGCY	1 cut(s)	592
HaeIII	GGCC	2 cut(s)	281, 369
HapII	CCGG	2 cut(s)	366, 407
HgaI	GACGC	2 cut(s)	554, 590
HhaI	GCGC	2 cut(s)	550, 591
Hin1I	GRCGYC	1 cut(s)	589
Hin6I	GCGC	2 cut(s)	548, 589
HinP1I	GCGC	2 cut(s)	548, 589
HinfI	GANTC	3 cut(s)	398, 611, 665
HpaII	CCGG	2 cut(s)	366, 407
HphI	GGTGA	5 cut(s)	131, 176, 316, 373, 410
Hpy166II	GTNNAC	2 cut(s)	55, 315
Hpy188I	TCNGA	1 cut(s)	694
Hpy188III	TCNNGA	4 cut(s)	218, 344, 427, 707
Hpy8I	GTNNAC	2 cut(s)	55, 315
Hpy99I	CGWCG	2 cut(s)	548, 584
HpyAV	CCTTC	3 cut(s)	286, 433, 515
HpyCH4III	ACNGT	2 cut(s)	674, 704
HpyCH4IV	ACGT	3 cut(s)	510, 597, 660
HpyCH4V	TGCA	1 cut(s)	315
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 496
HpyF3I	CTNAG	3 cut(s)	202, 609, 715
HpySE526I	ACGT	3 cut(s)	510, 597, 660
Hsp92I	GRCGYC	1 cut(s)	589
HspAI	GCGC	2 cut(s)	548, 589
KasI	GGCGCC	1 cut(s)	588
KpnI	GGTACC	1 cut(s)	299
Kzo9I	GATC	2 cut(s)	475, 694
LmnI	GCTCC	1 cut(s)	267
LpnPI	CCDG	9 cut(s)	10, 56, 102, 203, 318, 379, 420, 514, 635
Lsp1109I	GCAGC	1 cut(s)	241
MaeI	CTAG	4 cut(s)	129, 155, 207, 318
MaeII	ACGT	3 cut(s)	510, 597, 660
MaeIII	GTNAC	1 cut(s)	361
MalI	GATC	2 cut(s)	477, 696
MboI	GATC	2 cut(s)	475, 694
MboII	GAAGA	1 cut(s)	52
MfeI	CAATTG	1 cut(s)	136
MhlI	GDGCHC	2 cut(s)	317, 527
MlsI	TGGCCA	1 cut(s)	281
MluCI	AATT	4 cut(s)	76, 136, 451, 730
MluI	ACGCGT	1 cut(s)	582
MluNI	TGGCCA	1 cut(s)	281
Mly113I	GGCGCC	1 cut(s)	589
MlyI	GAGTC	1 cut(s)	620
MmeI	TCCRAC	1 cut(s)	693
MnlI	CCTC	3 cut(s)	160, 388, 560
Mox20I	TGGCCA	1 cut(s)	281
MscI	TGGCCA	1 cut(s)	281
MseI	TTAA	1 cut(s)	733
MslI	CAYNNNNRTG	1 cut(s)	287
Msp20I	TGGCCA	1 cut(s)	281
MspI	CCGG	2 cut(s)	366, 407
MspR9I	CCNGG	2 cut(s)	407, 408
MunI	CAATTG	1 cut(s)	136
MvnI	CGCG	2 cut(s)	548, 584
MwoI	GCNNNNNNNGC	2 cut(s)	155, 496
NarI	GGCGCC	1 cut(s)	589
NciI	CCSGG	2 cut(s)	407, 408
NcoI	CCATGG	1 cut(s)	370
NdeII	GATC	2 cut(s)	475, 694
NlaIV	GGNNCC	3 cut(s)	11, 297, 590
NmuCI	GTSAC	1 cut(s)	361
NspI	RCATGY	2 cut(s)	490, 657
OliI	CACNNNNGTG	1 cut(s)	287
PaeI	GCATGC	2 cut(s)	490, 657
PagI	TCATGA	2 cut(s)	426, 706
PfeI	GAWTC	2 cut(s)	398, 665
PflFI	GACNNNGTC	1 cut(s)	213
PflMI	CCANNNNNTGG	1 cut(s)	675
PkrI	GCNGC	2 cut(s)	231, 593
PleI	GAGTC	1 cut(s)	619
PluTI	GGCGCC	1 cut(s)	592
PmaCI	CACGTG	2 cut(s)	511, 661
PmlI	CACGTG	2 cut(s)	511, 661
PpsI	GAGTC	1 cut(s)	619
Ppu21I	YACGTR	2 cut(s)	511, 661
PspCI	CACGTG	2 cut(s)	511, 661
PspEI	GGTNACC	1 cut(s)	361
PspFI	CCCAGC	1 cut(s)	500
PspN4I	GGNNCC	3 cut(s)	11, 297, 590
PspPI	GGNCC	1 cut(s)	678
PsyI	GACNNNGTC	1 cut(s)	213
RsaI	GTAC	3 cut(s)	56, 200, 297
RsaNI	GTAC	3 cut(s)	55, 199, 296
RseI	CAYNNNNRTG	1 cut(s)	287
SaqAI	TTAA	1 cut(s)	733
SatI	GCNGC	2 cut(s)	230, 592
Sau3AI	GATC	2 cut(s)	475, 694
Sau96I	GGNCC	1 cut(s)	678
ScaI	AGTACT	1 cut(s)	200
SchI	GAGTC	1 cut(s)	620
ScrFI	CCNGG	2 cut(s)	407, 408
SduI	GDGCHC	2 cut(s)	317, 527
SfcI	CTRYAG	1 cut(s)	432
SfoI	GGCGCC	1 cut(s)	590
SinI	GGWCC	1 cut(s)	678
SmaI	CCCGGG	1 cut(s)	408
SmiMI	CAYNNNNRTG	1 cut(s)	287
SpeI	ACTAGT	1 cut(s)	317
SphI	GCATGC	2 cut(s)	490, 657
SrfI	GCCCGGGC	1 cut(s)	408
Sse9I	AATT	4 cut(s)	76, 136, 451, 730
SsiI	CCGC	3 cut(s)	392, 484, 592
SspDI	GGCGCC	1 cut(s)	588
SspMI	CTAG	4 cut(s)	129, 155, 207, 318
StyD4I	CCNGG	2 cut(s)	405, 406
StyI	CCWWGG	2 cut(s)	370, 551
TaaI	ACNGT	2 cut(s)	674, 704
TaiI	ACGT	3 cut(s)	513, 600, 663
TaqI	TCGA	1 cut(s)	543
TaqII	GACCGA	1 cut(s)	488
TasI	AATT	4 cut(s)	76, 136, 451, 730
TatI	WGTACW	1 cut(s)	198
TauI	GCSGC	1 cut(s)	594
TfiI	GAWTC	2 cut(s)	398, 665
Tru1I	TTAA	1 cut(s)	733
Tru9I	TTAA	1 cut(s)	733
TseFI	GTSAC	1 cut(s)	361
TseI	GCWGC	1 cut(s)	229
Tsp45I	GTSAC	1 cut(s)	361
TspDTI	ATGAA	3 cut(s)	7, 415, 723
TspMI	CCCGGG	1 cut(s)	406
Tth111I	GACNNNGTC	1 cut(s)	213
Van91I	CCANNNNNTGG	1 cut(s)	675
VneI	GTGCAC	1 cut(s)	313
VpaK11BI	GGWCC	1 cut(s)	678
XapI	RAATTY	1 cut(s)	76
XceI	RCATGY	2 cut(s)	490, 657
XcmI	CCANNNNNNNNNTGG	1 cut(s)	508
XmaI	CCCGGG	1 cut(s)	406
XspI	CTAG	4 cut(s)	129, 155, 207, 318
ZrmI	AGTACT	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.